Query gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 305
No_of_seqs 135 out of 2742
Neff 7.3
Searched_HMMs 23785
Date Mon May 30 09:24:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780360.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rqj_A Geranyltranstransferase 23.3 30 0.0013 13.4 12.0 66 39-107 62-127 (299)
2 2zy9_A Mg2+ transporter MGTE; 21.2 33 0.0014 13.2 8.0 13 78-90 363-375 (473)
3 1t95_A Hypothetical protein AF 17.4 20 0.00083 14.5 -0.3 26 60-86 106-132 (240)
4 2wbm_A MTHSBDS, ribosome matur 15.5 24 0.001 14.0 -0.3 26 60-86 121-147 (252)
5 2kdo_A Ribosome maturation pro 15.3 27 0.0011 13.7 -0.0 16 70-86 121-136 (252)
6 2an6_E Peptide from phyllopod; 10.5 42 0.0018 12.6 -0.2 15 71-85 2-16 (26)
7 3m8j_A FOCB protein; all-alpha 9.9 51 0.0021 12.1 0.0 38 56-93 1-38 (111)
8 1v74_A Colicin D; colicin D - 9.6 66 0.0028 11.4 0.5 14 77-90 2-15 (107)
9 2fho_A Spliceosomal protein SF 9.0 52 0.0022 12.0 -0.2 17 64-85 11-27 (47)
10 2f9d_P Splicing factor 3B subu 8.5 42 0.0018 12.5 -0.8 12 64-80 16-27 (43)
No 1
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=23.32 E-value=30 Score=13.42 Aligned_cols=66 Identities=17% Similarity=0.004 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 989999999999999999998863306612013712107056653047898999888877668999886
Q gi|254780360|r 39 SVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGL 107 (305)
Q Consensus 39 ~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~ 107 (305)
+.....-...+.=+..+++-+..|+.|.|-|.. | +.+|=+-.+-....|...+-.+...++-.+.-
T Consensus 62 ~~~~~~~~A~aiEllH~asLIhDDI~D~d~~~~--R-RG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~ 127 (299)
T 1rqj_A 62 STNTLDAPAAAVECIHAYSLIHDDLPAMDDDDL--R-RGLPTCHVKFGEANAILAGDALQTLAFSILSD 127 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCCE--E-TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--C-CCCCCCCEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 867899999999999999999805602452210--0-36985011316206666511778899999985
No 2
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus HB8} PDB: 2yvx_A
Probab=21.19 E-value=33 Score=13.16 Aligned_cols=13 Identities=8% Similarity=0.136 Sum_probs=5.4
Q ss_pred HHHHHHHCCHHHH
Q ss_conf 0566530478989
Q gi|254780360|r 78 RPIPLGQISPWEA 90 (305)
Q Consensus 78 RPl~~g~is~~~a 90 (305)
|-++.|+++.++.
T Consensus 363 R~la~g~i~~~~~ 375 (473)
T 2zy9_A 363 RALATRDLDLRDW 375 (473)
T ss_dssp HHHHTTSSCGGGH
T ss_pred HHHHHCCCCHHHH
T ss_conf 9999715882139
No 3
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=17.35 E-value=20 Score=14.51 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=15.8
Q ss_pred HHHHHCC-CHHCCCHHHHCHHHHHHHCC
Q ss_conf 8633066-12013712107056653047
Q gi|254780360|r 60 LNMYYDA-DIDKMMARTASRPIPLGQIS 86 (305)
Q Consensus 60 ~Nd~~D~-~iD~~~~RT~~RPl~~g~is 86 (305)
.+|+++. ---..|||| +||.|.++|.
T Consensus 106 ~k~Ii~~I~~~~VnP~T-~~P~p~~rIE 132 (240)
T 1t95_A 106 RKQIINFISRNTIDPRT-NAPHPPSRIE 132 (240)
T ss_dssp HHHHHHHHHHHEEBTTT-TBCCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-CCCCCHHHHH
T ss_conf 99999999997229888-9989889999
No 4
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein, ribosome binding; 1.75A {Methanothermobacterthermautotrophicus}
Probab=15.45 E-value=24 Score=14.04 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=15.4
Q ss_pred HHHHHCC-CHHCCCHHHHCHHHHHHHCC
Q ss_conf 8633066-12013712107056653047
Q gi|254780360|r 60 LNMYYDA-DIDKMMARTASRPIPLGQIS 86 (305)
Q Consensus 60 ~Nd~~D~-~iD~~~~RT~~RPl~~g~is 86 (305)
.+|+++. ---..|||| +||.|..+|.
T Consensus 121 ~~~Ii~~I~~~~VnP~T-~~P~p~~rIE 147 (252)
T 2wbm_A 121 RLKIINKIAREAINPQN-GLPHPPKRIE 147 (252)
T ss_dssp HHHHHHHHHHHEECTTT-CCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCC-CCCCCHHHHH
T ss_conf 99999999985628888-9989989999
No 5
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein, acetylation, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=15.32 E-value=27 Score=13.70 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=12.6
Q ss_pred CCCHHHHCHHHHHHHCC
Q ss_conf 13712107056653047
Q gi|254780360|r 70 KMMARTASRPIPLGQIS 86 (305)
Q Consensus 70 ~~~~RT~~RPl~~g~is 86 (305)
..|||| +||.|..+|.
T Consensus 121 ~VnP~T-~~P~p~~rIE 136 (252)
T 2kdo_A 121 CVNPET-KRPYTVILIE 136 (252)
T ss_dssp EECCTT-SCTTCHHHHH
T ss_pred CCCCCC-CCCCCHHHHH
T ss_conf 559888-9989999999
No 6
>2an6_E Peptide from phyllopod; protein-peptide complex, ligase; 3.00A {Mus musculus}
Probab=10.49 E-value=42 Score=12.55 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=9.9
Q ss_pred CCHHHHCHHHHHHHC
Q ss_conf 371210705665304
Q gi|254780360|r 71 MMARTASRPIPLGQI 85 (305)
Q Consensus 71 ~~~RT~~RPl~~g~i 85 (305)
+.+|||-||.+.-+-
T Consensus 2 qqertklrpvamvrp 16 (26)
T 2an6_E 2 QQERTKLRPVAMVRP 16 (26)
T ss_pred CCCCCCCCCEEEECC
T ss_conf 432023451256536
No 7
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=9.94 E-value=51 Score=12.07 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=31.3
Q ss_pred HHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHH
Q ss_conf 99988633066120137121070566530478989998
Q gi|254780360|r 56 ASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVL 93 (305)
Q Consensus 56 a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~ 93 (305)
++++-|+..-|.-|.-.-|+++.-|..|.+|..+-+++
T Consensus 1 ~~~~~~~~~~~~~~~~l~~~k~~~L~pG~vsee~f~LL 38 (111)
T 3m8j_A 1 GAMAQHEVITRGGDAFLLKLRESALSSGSMSEEQFFLL 38 (111)
T ss_dssp -----------CHHHHHHHHHHHCCCTTCSCHHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 93046688824644277764236657898799999999
No 8
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=9.56 E-value=66 Score=11.40 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=10.6
Q ss_pred CHHHHHHHCCHHHH
Q ss_conf 70566530478989
Q gi|254780360|r 77 SRPIPLGQISPWEA 90 (305)
Q Consensus 77 ~RPl~~g~is~~~a 90 (305)
+-||++|++|.++-
T Consensus 2 ~~plds~~ft~kqL 15 (107)
T 1v74_A 2 NDPLDSGRFSRKQL 15 (107)
T ss_dssp CCTTCBTTBCHHHH
T ss_pred CCCCCCCCCCHHHH
T ss_conf 98764651309988
No 9
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=8.97 E-value=52 Score=12.02 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=9.7
Q ss_pred HCCCHHCCCHHHHCHHHHHHHC
Q ss_conf 0661201371210705665304
Q gi|254780360|r 64 YDADIDKMMARTASRPIPLGQI 85 (305)
Q Consensus 64 ~D~~iD~~~~RT~~RPl~~g~i 85 (305)
+++|+|. +|||+-..++
T Consensus 11 ~e~eid~-----RNRpltDeeL 27 (47)
T 2fho_A 11 WEREIDE-----RNRPLSDEEL 27 (47)
T ss_dssp CCCCCCC-----CCCCSCTTHH
T ss_pred HHHHHHH-----HCCCCCHHHH
T ss_conf 9998997-----3488858899
No 10
>2f9d_P Splicing factor 3B subunit 1; P14 SF3BP14 SF3B155 SAP155 RRM, RNA binding protein; 2.50A {Homo sapiens} PDB: 2f9j_P
Probab=8.47 E-value=42 Score=12.54 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=0.0
Q ss_pred HCCCHHCCCHHHHCHHH
Q ss_conf 06612013712107056
Q gi|254780360|r 64 YDADIDKMMARTASRPI 80 (305)
Q Consensus 64 ~D~~iD~~~~RT~~RPl 80 (305)
+++||| + +|||+
T Consensus 16 ~e~eid---e--RNRPl 27 (43)
T 2f9d_P 16 WEREID---E--RNRPL 27 (43)
T ss_dssp HHHHHH---H--HTCCC
T ss_pred HHHHHH---H--HCCCC
T ss_conf 999999---8--44888
Done!