RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62] (305 letters) >gnl|CDD|179840 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional. Length = 296 Score = 345 bits (889), Expect = 6e-96 Identities = 145/282 (51%), Positives = 194/282 (68%), Gaps = 4/282 (1%) Query: 11 FIVLLKPRVMSLAIYTAFVGIVLAP-GHISVLKSVISIFAIAMGAGASGALNMYYDADID 69 ++ L KPRV+SL ++TA G++LAP G +L ++++ IA+ AGA+GALN Y D DID Sbjct: 13 YLALTKPRVISLNLFTALGGMLLAPPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDID 72 Query: 70 KMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYT 129 M RT +RP+ G+ISP EA + G+ L V +++GL +N ++A L IF YVV+YT Sbjct: 73 AKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYT 132 Query: 130 IWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCK 189 +WLKR TPQNIVIGG AGA+PP+IGWA+VTG +S +L++FLIIFLWTPPHFW+LA+ K Sbjct: 133 LWLKRRTPQNIVIGGAAGAMPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRK 192 Query: 190 DDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFT 249 DDY A IPMLP V R TK IL+YTVL V +LP +LG A + Y ++ LG F Sbjct: 193 DDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGLLYLVVALLLGAWFL 252 Query: 250 LWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 +AWR + D + +KLF SI YL +LF L+VDHL+ Sbjct: 253 YYAWRLYR---KDDRKWARKLFRYSINYLTLLFVALLVDHLL 291 >gnl|CDD|162379 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor. Length = 280 Score = 268 bits (688), Expect = 1e-72 Identities = 126/280 (45%), Positives = 177/280 (63%), Gaps = 4/280 (1%) Query: 11 FIVLLKPRVMSLAIYTAFVGIVLAPGH--ISVLKSVISIFAIAMGAGASGALNMYYDADI 68 ++ L KPR++SL + TAF G+ LAPG ++ ++++ + A ++ A NMY D DI Sbjct: 3 YLQLTKPRIISLLLITAFAGMWLAPGGALVNPPLLLLTLLGTTLAAASANAFNMYIDRDI 62 Query: 69 DKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIY 128 DK M RT +RP+ G+ISP EA G+ L V + I+ +N ++A L IF YV++Y Sbjct: 63 DKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVY 122 Query: 129 TIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLC 188 TIWLKR TPQN VIGG AGA+PP+IGWA+VTG +S+ + ++F IIFLW PPHFW+LAL Sbjct: 123 TIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKY 182 Query: 189 KDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHF 248 KDDY+ A IPMLP V +R TK I +YT V +L LG Y I+ LG F Sbjct: 183 KDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGWLYLIVATLLGALF 242 Query: 249 TLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVD 288 A++ + ++ D + +KLF S+ YL +LF L++D Sbjct: 243 LYLAFKFY--RDPTDRKKARKLFKFSLIYLALLFVALLID 280 >gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional. Length = 306 Score = 244 bits (624), Expect = 3e-65 Identities = 77/290 (26%), Positives = 148/290 (51%), Gaps = 2/290 (0%) Query: 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAP-GHISVLKSVISIFAIAMGAGASGALNMYY 64 L +I + KP ++ + + G LA GH+ + + ++ +++ + ALN Sbjct: 11 ASLKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDPVLMLAAVIGLSLVVASGCALNNCI 70 Query: 65 DADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCY 124 D DID M RT +R G+IS EA G++L V+ ++ N ++A Y Sbjct: 71 DRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVY 130 Query: 125 VVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSL 184 V +Y+++LKR + ++G ++GA+PP++G+ +VTG +L++ L+ LW PH +++ Sbjct: 131 VGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAI 190 Query: 185 ALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFL 244 A+ +DY A IP+LP TK+HI++Y ++ ++V L + G+ + Y + Sbjct: 191 AIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTALLPLAGYTGIGYLAVAAAT 250 Query: 245 GYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMK 294 + A + + D D ++LF SI + L ++++D ++ Sbjct: 251 SLWWLAMALKGYRHAVD-DTVWARQLFGFSILTITALSVMMLLDFVVAAT 299 >gnl|CDD|183803 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed. Length = 279 Score = 172 bits (437), Expect = 1e-43 Identities = 86/237 (36%), Positives = 134/237 (56%), Gaps = 2/237 (0%) Query: 7 RLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIA-MGAGASGALNMYYD 65 ++ ++ LLKPRV+ L A G LA H +I + + +G S A N + Sbjct: 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIE 60 Query: 66 ADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYV 125 DIDK+M+RT+ RP P+G ++ EA +G +L+ + L + ++A + + F Y Sbjct: 61 RDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYA 120 Query: 126 VIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLA 185 V+YTIWLK T NIVIGG AG + G+AS TG + + ++++ +I+LWTP H WSLA Sbjct: 121 VVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLA 180 Query: 186 LLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVF 242 L ++DY++A +PMLP VV ++T+ I I L I +L L + + I+V Sbjct: 181 LKYREDYRRAGVPMLPAVVGEKTSVRAISISNAL-MIPYILLLYLYYIGLIGLILVA 236 >gnl|CDD|178375 PLN02776, PLN02776, prenyltransferase. Length = 341 Score = 122 bits (308), Expect = 1e-28 Identities = 75/276 (27%), Positives = 127/276 (46%), Gaps = 6/276 (2%) Query: 14 LLKPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMM 72 L K R+ +L + T+ G VL G I + + + A ++ LN ++ D M Sbjct: 1 LSKARLSALVVATSGAGFVLGSGEAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKM 60 Query: 73 ARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWL 132 RT RP+P G+IS A V + + + ++ N ++A L +I Y +YT L Sbjct: 61 KRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYT-PL 119 Query: 133 KRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDY 192 K+ P N +G + GAIPP++GWA+ +G + ++V+ ++ W PHF +LA +C+DDY Sbjct: 120 KQIHPANTWVGAVVGAIPPLMGWAAASGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDY 179 Query: 193 QKASIPMLPNV-VTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLW 251 ML T R T + L + + +G L G S + + L + Sbjct: 180 AAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLTAYLAAS 239 Query: 252 AWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMV 287 A + +K+F S+ YL +L++ Sbjct: 240 A---ASFYREPTNANARKMFHGSLLYLPAFMALLLL 272 >gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members. Length = 281 Score = 63.9 bits (156), Expect = 4e-11 Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 4/135 (2%) Query: 43 SVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSI 102 + ++ AI M GA +N +D D D + RT SRP+ G +S +A + + + ++ Sbjct: 43 GLFTVGAILM-RGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVAL 101 Query: 103 VIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDV 162 ++ L +N ++ L S+ V Y +KR T ++ G+A ++GWA+VTGD+ Sbjct: 102 GVL-LQLNPLTILLGVASLA-LVATYPF-MKRITYWPQLVLGLAFGWGALMGWAAVTGDL 158 Query: 163 SIASLVMFLIIFLWT 177 S A+ V++L LWT Sbjct: 159 STAAWVLYLANILWT 173 >gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed. Length = 314 Score = 60.3 bits (147), Expect = 5e-10 Identities = 48/132 (36%), Positives = 73/132 (55%), Gaps = 10/132 (7%) Query: 49 AIAM-GAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGL 107 AIAM GAG + N D DID +ART SRP+P GQ+S +A V V A+ + ++ L Sbjct: 81 AIAMRGAGCT--YNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVL-L 137 Query: 108 AINWVSATLLFMSIFCYVVIYTIWLKRFT--PQNIVIGGIAGAIPPMIGWASVTGDVSIA 165 NW + L S+ V Y ++KR T PQ G+A + ++GWA+ G +S+A Sbjct: 138 QFNWFAIALGIASLA-IVAAYP-FMKRITWWPQ--FFLGLAFSWGALMGWAAHFGSLSLA 193 Query: 166 SLVMFLIIFLWT 177 +++++ WT Sbjct: 194 AVLLYAGSIAWT 205 >gnl|CDD|183790 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed. Length = 282 Score = 58.7 bits (143), Expect = 2e-09 Identities = 40/123 (32%), Positives = 66/123 (53%), Gaps = 11/123 (8%) Query: 59 ALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLF 118 +N Y D D D + RT +RP+ G +S EA L V L + + +++ L +N ++ L Sbjct: 60 VINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLV-LTLNTLTIWLSV 118 Query: 119 MSIFCYVVIYTIWLKRFT--PQNIVIGGIA--GAIPPMIGWASVTGDVSIASLVMFLIIF 174 ++ IY ++KR+T PQ V+ G A IP + +A+V G V + + ++FL Sbjct: 119 AALA-LAWIYP-FMKRYTHLPQ--VVLGAAFGWGIP--MAFAAVQGSVPLEAWLLFLANI 172 Query: 175 LWT 177 LWT Sbjct: 173 LWT 175 >gnl|CDD|183789 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed. Length = 285 Score = 55.3 bits (134), Expect = 2e-08 Identities = 45/183 (24%), Positives = 96/183 (52%), Gaps = 21/183 (11%) Query: 2 YFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAI-AMGAGASGA- 59 YF++ RL+ KP + L + G++LA + S++ +F I ++ ++G Sbjct: 10 YFKLMRLH------KPIGILLVFFPTLFGLLLASHSLLPDISLLVLFIIGSVLMRSAGCI 63 Query: 60 LNMYYDADIDKMMARTASRPIPLGQISPWEA-WVLGVSLAVSSIVIMGLAINWVSATLLF 118 +N +D IDK +ART +RP+ G +S +A +L + L ++ ++++ L + T ++ Sbjct: 64 INDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLL-----NKTTIY 118 Query: 119 MSIF--CYVVIYTIWLKRFT--PQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIF 174 +S +V+Y + +KRF PQ + G + ++ +A+V + I ++++++ Sbjct: 119 LSFIAVILIVLYPL-MKRFFYWPQ--LFLGFTFNMGILMAFAAVQNQLDIEAILLYIGCI 175 Query: 175 LWT 177 WT Sbjct: 176 FWT 178 >gnl|CDD|171798 PRK12886, ubiA, prenyltransferase; Reviewed. Length = 291 Score = 53.5 bits (129), Expect = 6e-08 Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 27 AFVGIVLAPGHISVLKSVISIFAIAMGA-GASGALNMYYDADIDKMMARTASRPIPLGQI 85 A +G VLA + + I +GA A+ N DA+ID RTA R IP G I Sbjct: 27 AGIGAVLAALGLPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLI 86 Query: 86 SPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGI 145 S A +L + L+ ++ +N + L ++F ++++Y+ + KRFT V+ G Sbjct: 87 SKGSA-ILFIVLSSLLMLFAAWFLNPLCLYLSPPALF-FLLLYS-YCKRFTALAHVVLGF 143 Query: 146 AGAIPPMIGWASVTGDVSIASLVMFLIIFLW 176 A+ P+ W ++ G + + ++++ L + W Sbjct: 144 CLALAPLGAWIAIRGTIELPAILLGLAVLFW 174 >gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed. Length = 284 Score = 53.2 bits (128), Expect = 9e-08 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 5/129 (3%) Query: 50 IAMGAGASGA--LNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGL 107 +AM + A N D +ID RTA R + G +S AW G +A++ + Sbjct: 46 VAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWT-GALVALAVFLGAAA 104 Query: 108 AINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASL 167 +N + L +++ VV Y + KRFT I G+A A+ P+ W +VTG S ++ Sbjct: 105 LLNPLCLALAPLAVAPLVV-YP-YAKRFTNFPHAILGLAQAVGPVGAWIAVTGTWSWPAV 162 Query: 168 VMFLIIFLW 176 ++ L + LW Sbjct: 163 LLGLAVGLW 171 >gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed. Length = 279 Score = 51.1 bits (123), Expect = 4e-07 Identities = 53/279 (18%), Positives = 119/279 (42%), Gaps = 7/279 (2%) Query: 7 RLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDA 66 ++ ++ LL+P +A +G ++A G + + ++++ +G++ ALN Y+D Sbjct: 3 KMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPLDEALLGFLTAFFASGSANALNDYFDY 62 Query: 67 DIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVV 126 ++D++ RPIP G+IS EA +L + L + ++ L ++ +S+ Sbjct: 63 EVDRINRPD--RPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVLGI-- 118 Query: 127 IYTIWLKRF-TPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLA 185 +Y LK + N+ + + G I G+++ A +++ + FL T Sbjct: 119 LYNWKLKEYGLIGNLYVAFLTGM--TFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKD 176 Query: 186 LLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLG 245 + + + L + ++ +L ++ LP + G ++ Y V Sbjct: 177 IEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPVLVAD 236 Query: 246 YHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTI 284 F A+ ++ + IR +K+ L ++ V F + Sbjct: 237 LIFLYSAYSLLRSQDRETIRKVRKITLTAMLLALVAFAL 275 >gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed. Length = 276 Score = 50.0 bits (120), Expect = 8e-07 Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 11/171 (6%) Query: 11 FIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGA-GASGALNMYYDADID 69 ++ L +P +A AF+G +A G +S FA A GA A+N Y+D +ID Sbjct: 7 YLELTRPVNAVVAGVAAFIGAFIAGGILSSPSLTGLAFAAVFLATGAGNAINDYFDREID 66 Query: 70 KMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATL-LFMSIFCYVVIY 128 ++ RPIP G +SP A + L + + + + + + LF S+ +V+Y Sbjct: 67 RI--NRPDRPIPSGAVSPRGALAFSILLFAAGVAL-AFLLPPLCLAIALFNSLL--LVLY 121 Query: 129 TIWLKRFTP--QNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWT 177 LK TP N + + G+ + G A+V + +A LV+F + L T Sbjct: 122 AETLKG-TPGLGNASVAYLTGST-FLFGGAAVGTEGLLALLVLFALAALAT 170 >gnl|CDD|162380 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc. Length = 282 Score = 46.2 bits (110), Expect = 1e-05 Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 4/148 (2%) Query: 27 AFVGIVLAPGHISVLKSVISIFAIAMGAGASG-ALNMYYDADIDKMMARTASRPIPLGQI 85 A+ G +LA + LK++I I A+ A + A N D ID RT +RP+ G I Sbjct: 21 AYAGALLAAKGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLI 80 Query: 86 SPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGI 145 S EA + + L+++ + +N ++ L + + V+I + KRFT + G Sbjct: 81 SKKEARTM-IILSLALFLSASYFLNPLAFILSPLVLL--VLIIYPYTKRFTFLCHYVLGS 137 Query: 146 AGAIPPMIGWASVTGDVSIASLVMFLII 173 + P+ GW +V G +S + L I Sbjct: 138 TYGLAPLAGWVAVIGTISFFLVAWLLGI 165 >gnl|CDD|183804 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed. Length = 290 Score = 45.0 bits (107), Expect = 3e-05 Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 27/254 (10%) Query: 44 VISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLG-VSLAVSSI 102 +I + A+A A A +N +D DID + RT RP+ ++S V+ V+L ++ Sbjct: 50 IIILGALATSA-AGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAG 108 Query: 103 VIMGLAIN--W--VSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASV 158 + L W V+A + IF Y + KR P ++ IA +I W++V Sbjct: 109 LAFFLNPLSFWLCVAAVPV---IFLYPL-----AKRVFPVPQLVLAIAWGFAVLISWSAV 160 Query: 159 TGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTV 218 TG + + + +++ WT A+ ++D + + + R I ++ Sbjct: 161 TGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNS-SAIFFGRYAPEAIGLFFA 219 Query: 219 LT----SIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIR-VTKKLFLE 273 LT +I+GVL + + I WA + ++ +LFL+ Sbjct: 220 LTVGFLAILGVLLELHLPFWIGLAIAAVL-------WARQYRRLRQANLPPLAYGQLFLQ 272 Query: 274 SITYLFVLFTILMV 287 ++ F+L +++ Sbjct: 273 NVWIGFLLLAGMIL 286 >gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed. Length = 277 Score = 44.3 bits (105), Expect = 4e-05 Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 12/145 (8%) Query: 11 FIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIF-AIAMGAGASGALNMYYDADID 69 FI + +P LA +G ++A G I +K++I IF + +G +N Y+D +ID Sbjct: 6 FIEITRPHNCILAGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEID 65 Query: 70 KMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYT 129 K+ +RP+P G +S A + L + + IN + ++ YV+++ Sbjct: 66 KI--NRPNRPLPRGAMSRKAALYYSLLLFAVGLAL-AYLINIEA---FLFALGAYVLMF- 118 Query: 130 IWLKRFTPQ----NIVIGGIAGAIP 150 ++ + P N+V+ + GA P Sbjct: 119 LYAWKLKPLPFIGNVVVALLTGATP 143 >gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase. Length = 289 Score = 44.3 bits (105), Expect = 4e-05 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 17/161 (10%) Query: 29 VGIVLAPGHISVLKSVISIFAIAMGA----GASGALNMYYDADIDKMMARTASRPIPLGQ 84 + + PG + LK ++++F GA GA +N D DIDK + RT RPI G Sbjct: 32 IALAAPPGSLPDLK-MLALFGC--GALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 Query: 85 ISPWEAWV-LGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIG 143 ++P++ LG L + ++ L +N S L S+ V Y + +KRFT Sbjct: 89 LTPFQGVGFLGAQLLLGLGIL--LQLNNYSRILGASSLL-LVFTYPL-MKRFTFWPQAFL 144 Query: 144 GIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSL 184 G+ ++GWA+V G + A +++ L+ W+L Sbjct: 145 GLTFNWGALLGWAAVKGSLDPA-----VVLPLYASGVCWTL 180 >gnl|CDD|183439 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional. Length = 295 Score = 41.8 bits (99), Expect = 2e-04 Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 8/98 (8%) Query: 39 SVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLA 98 ++LK +++ + + A +N D + D++ +RPI G +S A++L V L Sbjct: 44 ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLL 103 Query: 99 VSSIVIMGLAINWVSATLLFMSIFCYVVI---YTIWLK 133 V+S LA+ ++ + L + + Y+V+ Y+ LK Sbjct: 104 VAS-----LALAYLLSPKLALVLLVYLVLNLAYSFKLK 136 >gnl|CDD|183862 PRK13106, ubiA, prenyltransferase; Reviewed. Length = 300 Score = 41.6 bits (98), Expect = 3e-04 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 17/129 (13%) Query: 27 AFVGIVLAPGHISVLKSVISIFAIAMGAGASG-ALNMYYDADIDKMMARTASRPIPLGQI 85 A++G +A I + ++I IF +G + D +ID RT +RP+ G I Sbjct: 34 AYLGAFVAIKGIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAI 93 Query: 86 SPWEAWVLGVSLAVSSIVIMGLAINWVSA------TLLFMSIFCYVVIYTIWLKRFTP-Q 138 EA L + GL + + SA LL I + + ++KR+T Sbjct: 94 KISEAKAL---------ITAGLILFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFA 144 Query: 139 NIVIGGIAG 147 N + I G Sbjct: 145 NYHLASIQG 153 >gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional. Length = 331 Score = 39.7 bits (93), Expect = 0.001 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%) Query: 52 MGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEA---WVLGVSLAVSSIVIMGLA 108 +G G S ++N Y+D ++D++ T RPIP G++S EA ++ + LA+ V +GL Sbjct: 61 LGTGFSQSVNDYFDLELDRVNEPT--RPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLH 118 Query: 109 INWVSATLLFMSIFCYVVIYTIW 131 I ++ SI + + I+ Sbjct: 119 IGGERGMVIISSILAGLFVAYIY 141 >gnl|CDD|183806 PRK12874, ubiA, prenyltransferase; Reviewed. Length = 291 Score = 37.7 bits (88), Expect = 0.004 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 3/119 (2%) Query: 59 ALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLF 118 A N D DIDK RTA+RP G+IS + V A+ I + IN + A L Sbjct: 65 AFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYF-INPL-AFKLS 122 Query: 119 MSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWT 177 + Y+ KRF+ ++ G++ + P+ G +V G++ + S+ + L + W Sbjct: 123 FPFLIVLGGYSY-FKRFSSLAHLVLGLSLGLAPIAGVVAVLGEIPLWSVFLALGVMFWV 180 >gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed. Length = 279 Score = 37.2 bits (87), Expect = 0.005 Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 14/101 (13%) Query: 27 AFVGIVLAPGH-ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQI 85 A +G ++A I + +++ + + +N YD +IDK+ RPIP G+I Sbjct: 22 AIIGYLIASNFKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKI--NKPERPIPSGRI 79 Query: 86 SPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVV 126 S EA + ++L I+GL ++ +F++I+ +++ Sbjct: 80 SLKEAKIFSITL-----FIVGLILS------IFINIYAFLI 109 >gnl|CDD|181313 PRK08238, PRK08238, hypothetical protein; Validated. Length = 479 Score = 33.3 bits (77), Expect = 0.080 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 25/120 (20%) Query: 50 IAMGAGASGA--LNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGL 107 +A AS LN D + D+ R RP G + L ++ + + L Sbjct: 233 LAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLAL-AL 291 Query: 108 AINW-VSATLLFMSIFCYVVI---YTIWLKR------------FTPQNIVIGGIAGAIPP 151 A+ LL Y+ + Y++ LKR +T + I+ G A + Sbjct: 292 ALGPAFLLVLL-----AYLALTLAYSLRLKRKVLVDVLTLAALYTLR-IIAGAAAIGVAL 345 >gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana. Length = 283 Score = 33.2 bits (76), Expect = 0.089 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 8/87 (9%) Query: 52 MGAGASGALNMYYDADIDKMMARTASRPIPLGQIS-PWEAWVLGVSLAVSSIVIMGLAIN 110 +G G S ++N Y+D D+D + RPIP G IS W V +V + L N Sbjct: 49 LGTGFSQSINDYFDRDVDAI--NEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLG-N 105 Query: 111 WVSATLLFMSIFCYVVIYT---IWLKR 134 W+ + I VIY+ I LKR Sbjct: 106 WLIVLFTVVGIV-LAVIYSMPPIKLKR 131 >gnl|CDD|181034 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed. Length = 314 Score = 32.6 bits (75), Expect = 0.11 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 11/74 (14%) Query: 54 AGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVS 113 G S LN Y+D ++D + RPIP G IS L L V + + Sbjct: 78 CGTSQTLNDYFDREVDAI--NEPYRPIPSGAISLRWVLYLIAVLTVLGLAV--------- 126 Query: 114 ATLLFMSIFCYVVI 127 A LL +F ++ Sbjct: 127 AYLLGPWVFLAALL 140 >gnl|CDD|171787 PRK12873, ubiA, prenyltransferase; Reviewed. Length = 294 Score = 29.6 bits (67), Expect = 0.91 Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 9/132 (6%) Query: 55 GASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWV-LGVSLAVSSIVIMGL--AINW 111 GA N +D ID+ + RT +RP+ G+IS A+ L V L +S V++ L Sbjct: 58 GAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRN 117 Query: 112 VSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFL 171 + +L F+++ ++IY KR+ I + +I WA+ G ++ + Sbjct: 118 LCLSLAFLAL-PPILIYPS-AKRWFAYPQAILALCWGFAVLIPWAAAEGSLNGG----WP 171 Query: 172 IIFLWTPPHFWS 183 ++F W W+ Sbjct: 172 LLFCWLATLLWT 183 >gnl|CDD|148828 pfam07446, GumN, GumN protein. This family contains the bacterial protein GumN (approximately 330 residues long). Note that many members of this family are hypothetical proteins. Length = 259 Score = 28.8 bits (65), Expect = 1.8 Identities = 10/44 (22%), Positives = 25/44 (56%) Query: 65 DADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLA 108 ++ A A+R +PL ++ ++ W ++LA+ ++ +GL+ Sbjct: 76 PELYARLAAALAARGLPLAALAKFKPWFAALTLALLALQKLGLS 119 >gnl|CDD|163384 TIGR03664, fut_nucase, futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli. Length = 222 Score = 28.4 bits (64), Expect = 2.1 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 132 LKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALL 187 L R + ++ GIAG P G A+V GD+ +A + + TP F L L Sbjct: 51 LARAPYELVINAGIAGGFP---GSAAV-GDLVVADSEIAADLGAETPEGFLPLEAL 102 >gnl|CDD|183665 PRK12665, PRK12665, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 521 Score = 28.4 bits (64), Expect = 2.3 Identities = 9/25 (36%), Positives = 17/25 (68%) Query: 38 ISVLKSVISIFAIAMGAGASGALNM 62 +S++ S++ + IA+ A+G LNM Sbjct: 169 VSMVSSLLFLIGIALVYAATGTLNM 193 >gnl|CDD|178704 PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional. Length = 832 Score = 28.3 bits (63), Expect = 2.6 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 14/85 (16%) Query: 90 AWVL-GVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTI--WLKRFTPQNIVIGG-- 144 AW+L +++A++ LA WV + + +FC+ V+ W+ R TP+ Sbjct: 214 AWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFY 273 Query: 145 ---------IAGAIPPMIGWASVTG 160 I+G I IG SV G Sbjct: 274 ICLILTGVMISGFITDAIGTHSVFG 298 >gnl|CDD|177652 PLN00012, PLN00012, chlorophyll synthetase; Provisional. Length = 375 Score = 27.9 bits (62), Expect = 3.8 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 9/78 (11%) Query: 55 GASGALNMYYDADIDKMMARTASRPIPLGQISPWEA----WVL---GVSLAVSSIVIMGL 107 G + +N +YD +ID + RPIP G IS E WVL G+ LA + V G Sbjct: 137 GYTQTINDWYDREIDAI--NEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGH 194 Query: 108 AINWVSATLLFMSIFCYV 125 V L S+ Y+ Sbjct: 195 DFPIVFYLALGGSLLSYI 212 >gnl|CDD|106000 PRK12871, ubiA, prenyltransferase; Reviewed. Length = 297 Score = 27.1 bits (60), Expect = 6.4 Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 33/207 (15%) Query: 52 MGAGASGALNMYYDA-----DIDKMMART----ASRPIPLGQISPWEA-WVLGVSLAVSS 101 G A LN Y D D++ + R RPIP G++S A + + AV+S Sbjct: 52 FGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTS 111 Query: 102 IVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAG----AIPPMIGWAS 157 +I+ L + M ++ Y + +K+ Q + + G + P G+ Sbjct: 112 ALILTLPYPNSLYVFVIM-LYSYGIEAFYQVKK-RNQKYPVAQLLGRTDFTLFPAAGYL- 168 Query: 158 VTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYT 217 G + +L+ + + WT +A L +D+ ++ DR M + Sbjct: 169 CYGQPDMTALLYMVFFYPWT------MAHLGLNDF--------IDLENDRARGMKSI--A 212 Query: 218 VLTSIVGVLPTMLGFASVTYGIIVFFL 244 VL + G + + GF ++ + +FFL Sbjct: 213 VLYGMKGTMYWVTGFTALHFLAAIFFL 239 >gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP). Length = 306 Score = 26.9 bits (59), Expect = 7.0 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Query: 55 GASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSA 114 G + +N +YD DID + RPIP G IS E V L ++ I I + W Sbjct: 68 GYTQTINDFYDRDIDAI--NEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGH 125 Query: 115 T 115 Sbjct: 126 E 126 >gnl|CDD|177437 PHA02614, PHA02614, Major capsid protein VP1; Provisional. Length = 363 Score = 26.9 bits (60), Expect = 7.7 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 10/49 (20%) Query: 182 WSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTML 230 +SLA + ++PML +T T M +V T +VGV P++L Sbjct: 84 YSLA--------RINLPMLNEDLTCDTLLMWEA-VSVKTEVVGV-PSLL 122 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.332 0.143 0.453 Gapped Lambda K H 0.267 0.0734 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,129,155 Number of extensions: 335468 Number of successful extensions: 1154 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1110 Number of HSP's successfully gapped: 111 Length of query: 305 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 212 Effective length of database: 3,984,929 Effective search space: 844804948 Effective search space used: 844804948 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 57 (25.7 bits)