RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780360|ref|YP_003064773.1| protoheme IX
farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (305 letters)



>d1sva1_ b.121.6.1 (1:) Polyomavirus coat proteins {Simian virus 40,
           Sv40 [TaxId: 10633]}
          Length = 348

 Score = 29.8 bits (67), Expect = 0.29
 Identities = 16/97 (16%), Positives = 29/97 (29%), Gaps = 22/97 (22%)

Query: 177 TPPHFW--SLALLCKDDYQ---------------KASIPMLPNVVTDRTTKMHILIYTVL 219
              H    S +L  +  +                +  +P +   +T     M     TV 
Sbjct: 45  PDEHQKGLSKSLAAEKQFTDDSPDKEQLPCYSVARIPLPNINEDLTCGNILMWEA-VTVK 103

Query: 220 TSIVGV--LPTMLGFASVT--YGIIVFFLGYHFTLWA 252
           T ++GV  +  +      T   G      G +F  +A
Sbjct: 104 TEVIGVTAMLNLHSGTQKTHENGAGKPIQGSNFHFFA 140


>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
           {Aspergillus nidulans [TaxId: 162425]}
          Length = 350

 Score = 26.5 bits (57), Expect = 2.9
 Identities = 10/101 (9%), Positives = 20/101 (19%), Gaps = 9/101 (8%)

Query: 1   MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAP-GHISVLKSVISIFAIAMGAGASGA 59
           +Y   F    + +     +               P   +     V          G    
Sbjct: 150 IYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKW 209

Query: 60  LNMYYD--------ADIDKMMARTASRPIPLGQISPWEAWV 92
                           +    +R  +R +   Q+   E  V
Sbjct: 210 NGHRIALTFETLSPVQVCAAFSRALNRRVTYVQVPKVEIKV 250


>d1s9ca2 d.38.1.4 (A:10-163) 2-enoyl-coa hydratase domain of
           multifunctional peroxisomal
           hydratase-dehydrogenase-epimerase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 154

 Score = 25.5 bits (55), Expect = 6.3
 Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 4/78 (5%)

Query: 29  VGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPW 88
           +G  L P   +  +    ++A+ +GA      ++ +  +     +         G I   
Sbjct: 2   IGQKLPPFSYAYTELEAIMYALGVGASIKDPKDLKFIYEGSSDFS----CLPTFGVIIGQ 57

Query: 89  EAWVLGVSLAVSSIVIMG 106
           ++ + G    +  + I  
Sbjct: 58  KSMMGGGLAEIPGLSINF 75


>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma
           mansoni) [TaxId: 6183]}
          Length = 208

 Score = 24.8 bits (54), Expect = 9.2
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 187 LCKDDYQKASIPMLPNVVTDRTTKMHILIYTVL 219
           L K   +K+SI M P+ VT          +  L
Sbjct: 39  LQKSTNEKSSIKMFPSYVTKTPNGTETGNFLAL 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.143    0.453 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,171,257
Number of extensions: 52806
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 17
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.5 bits)