BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62] (305 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 305 Score = 612 bits (1577), Expect = e-177, Method: Compositional matrix adjust. Identities = 305/305 (100%), Positives = 305/305 (100%) Query: 1 MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGAL 60 MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGAL Sbjct: 1 MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGAL 60 Query: 61 NMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMS 120 NMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMS Sbjct: 61 NMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMS 120 Query: 121 IFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPH 180 IFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPH Sbjct: 121 IFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPH 180 Query: 181 FWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGII 240 FWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGII Sbjct: 181 FWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGII 240 Query: 241 VFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYF 300 VFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYF Sbjct: 241 VFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLIDMKTVERYF 300 Query: 301 FSSFL 305 FSSFL Sbjct: 301 FSSFL 305 >gi|254780205|ref|YP_003064618.1| prenyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 310 Score = 45.1 bits (105), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 15/115 (13%) Query: 55 GASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAIN---- 110 GA+ N D DID + RT SRP+P GQ + ++A V V + S V++ L N Sbjct: 79 GAACTWNDLVDHDIDSQVLRTRSRPLPSGQCTRFQALVFAVLQFLISFVLL-LQFNPFVI 137 Query: 111 WVSATLLFMSIFCYVVIYTIWLKRF--TPQNIVIGGIAGAIPPMIGWASVTGDVS 163 V LLF+S+ +Y KRF PQ ++ G AG + +GW ++ S Sbjct: 138 CVGFALLFISL-----LYPF-SKRFILCPQVVLGIGFAGGV--FVGWGALHASFS 184 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 23.9 bits (50), Expect = 3.7, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 134 RFTPQNIVIGGIAGAIPPMIGWAS 157 RFT N I + G IP +G+ S Sbjct: 265 RFTQANSEISALLGRIPSAVGYQS 288 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.332 0.143 0.453 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 187,959 Number of Sequences: 1233 Number of extensions: 7370 Number of successful extensions: 30 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 4 length of query: 305 length of database: 328,796 effective HSP length: 74 effective length of query: 231 effective length of database: 237,554 effective search space: 54874974 effective search space used: 54874974 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 38 (19.2 bits)