HHsearch alignment for GI: 254780361 and conserved domain: TIGR00354
>TIGR00354 polC DNA polymerase II, large subunit DP2; InterPro: IPR004475 This family represents the large subunit, DP2, of a two subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0006308 DNA catabolic process.
Probab=90.83 E-value=0.12 Score=29.43 Aligned_cols=23 Identities=17% Similarity=-0.038 Sum_probs=19.3
Q ss_pred CCEEECCCCCCEEEEEEEECCCCC
Q ss_conf 837887899782440464257786
Q gi|254780361|r 25 PAYVEDKKSGELRRPHHVDMKTGL 48 (61)
Q Consensus 25 p~l~~c~~cG~~~~~H~vc~~cG~ 48 (61)
T Consensus 677 i~~~~CP~Cgk~s~-~~~Cp~CG~ 699 (1173)
T TIGR00354 677 IAIAKCPSCGKESL-YRVCPVCGE 699 (1173)
T ss_pred ECCCCCCCCCCCCE-EEECCCCCC
T ss_conf 50121887664000-014577885