Query gi|254780361|ref|YP_003064774.1| ribosomal protein L32 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 61
No_of_seqs 118 out of 665
Neff 4.8
Searched_HMMs 13730
Date Wed Jun 1 03:29:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780361.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j0151 g.41.8.5 (5:2-60) Ribo 99.9 7.5E-29 5.4E-33 169.5 1.6 57 1-57 3-59 (59)
2 d2zjrz1 g.41.8.5 (Z:2-59) Ribo 99.9 2.1E-28 1.5E-32 167.1 2.4 56 1-56 3-58 (58)
3 d2qam01 g.41.8.5 (0:1-56) Ribo 99.9 4.4E-26 3.2E-30 155.0 1.7 55 2-57 1-56 (56)
4 d2apob1 g.41.16.1 (B:403-457) 92.1 0.026 1.9E-06 30.4 1.6 22 26-48 3-24 (55)
5 d2ey4e1 g.41.16.1 (E:4-55) Rib 90.6 0.044 3.2E-06 29.3 1.5 21 27-48 2-22 (52)
6 d2f9yb1 c.14.1.4 (B:23-285) Ac 84.6 0.14 1E-05 26.6 1.0 22 28-49 3-30 (263)
7 d1hk8a_ c.7.1.3 (A:) Class III 82.8 0.25 1.8E-05 25.3 1.7 30 23-52 511-545 (561)
8 d1dl6a_ g.41.3.1 (A:) Transcri 82.7 0.13 9.6E-06 26.7 0.3 39 20-58 4-48 (58)
9 d2gnra1 b.40.4.15 (A:8-144) Hy 78.4 0.63 4.6E-05 23.2 2.6 24 25-48 37-61 (137)
10 d2akla2 g.41.3.5 (A:3-40) Hypo 72.1 0.55 4E-05 23.5 0.9 23 26-48 2-28 (38)
11 d2ct7a1 g.44.1.4 (A:8-80) Ring 67.5 1.2 8.9E-05 21.7 1.9 28 22-49 13-45 (73)
12 d1vqo11 g.41.8.2 (1:1-56) Ribo 66.1 1.7 0.00012 21.0 2.4 25 24-48 13-39 (56)
13 d1pfta_ g.41.3.1 (A:) Transcri 56.0 1.8 0.00013 20.9 1.0 31 28-58 6-42 (50)
14 d1pfva3 g.41.1.1 (A:141-175) M 54.9 1.7 0.00012 21.0 0.7 31 28-58 3-34 (35)
15 d2k4xa1 g.41.8.8 (A:1-55) Ribo 48.8 3 0.00022 19.7 1.2 22 28-49 19-45 (55)
16 d2vuti1 g.39.1.1 (I:671-712) E 42.5 1.3 9.3E-05 21.6 -1.5 21 29-49 2-30 (42)
17 d1lkoa2 g.41.5.1 (A:148-191) R 41.8 5.2 0.00038 18.4 1.6 27 26-52 7-36 (44)
18 d3gata_ g.39.1.1 (A:) Erythroi 41.2 1.6 0.00012 21.0 -1.1 22 28-49 5-34 (66)
19 d1rqga3 g.41.1.1 (A:139-173) M 40.9 2.1 0.00016 20.4 -0.5 29 28-56 3-32 (35)
20 d1nnqa2 g.41.5.1 (A:135-171) R 39.1 11 0.00078 16.8 2.8 26 25-50 3-30 (37)
21 d1yuza2 g.41.5.1 (A:167-202) N 38.8 10 0.00075 16.8 2.7 24 26-49 4-29 (36)
22 d1p9ra_ c.37.1.11 (A:) Extrace 30.1 14 0.001 16.2 2.2 29 28-56 296-346 (401)
23 d1lv3a_ g.39.1.9 (A:) Hypothet 28.5 15 0.0011 16.0 2.2 16 23-38 2-17 (65)
24 d1y0ja1 g.39.1.1 (A:200-238) E 28.5 4.6 0.00034 18.7 -0.4 10 40-49 23-32 (39)
25 d1ryqa_ g.41.9.3 (A:) putative 27.6 13 0.00091 16.4 1.6 32 24-56 6-43 (67)
26 d1vdca2 c.3.1.5 (A:118-243) Th 25.3 7.5 0.00055 17.6 0.2 17 41-57 20-40 (130)
27 d1twfi2 g.41.3.1 (I:50-121) RB 22.1 22 0.0016 15.1 2.0 21 28-48 24-59 (72)
28 d1m2ka_ c.31.1.5 (A:) AF1676, 21.7 20 0.0014 15.4 1.7 22 22-43 137-158 (249)
29 d2dkta1 g.89.1.1 (A:8-81) RING 20.4 23 0.0017 15.0 1.8 23 25-47 49-71 (74)
No 1
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}
Probab=99.94 E-value=7.5e-29 Score=169.47 Aligned_cols=57 Identities=42% Similarity=0.670 Sum_probs=56.0
Q ss_pred CCCCCCCCCHHCCCCHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf 978878876100174122310268837887899782440464257786768796434
Q gi|254780361|r 1 MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVL 57 (61)
Q Consensus 1 MAVPKrK~S~sr~~~RRsh~~l~~p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~ 57 (61)
|+|||+|+|+||+++|||||+|++|+|+.|++||++++||+||++||||+|||||++
T Consensus 3 ~pVPKrk~Sksr~~~RRsh~~l~~p~l~~C~~CG~~~~pHrvC~~CG~YkGr~Vi~v 59 (59)
T d2j0151 3 HPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRKVLEV 59 (59)
T ss_dssp SSCCSSCCCHHHHHHHHGGGCCCCCCCBCCSSSSSCBCTTCBCTTTCCSSSCCSCCC
T ss_pred CCCCCCCCCCHHCHHHHCCCCCCCCCEEECCCCCCCCCCEEECCCCCEECCEEEEEC
T ss_conf 887777666010243311210358834688999981066068798980999986769
No 2
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}
Probab=99.94 E-value=2.1e-28 Score=167.11 Aligned_cols=56 Identities=46% Similarity=0.636 Sum_probs=55.0
Q ss_pred CCCCCCCCCHHCCCCHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCCCEEEEE
Q ss_conf 97887887610017412231026883788789978244046425778676879643
Q gi|254780361|r 1 MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFV 56 (61)
Q Consensus 1 MAVPKrK~S~sr~~~RRsh~~l~~p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~ 56 (61)
|+|||+|+|+||+++|||||+|++|+|++||+||++++||+||++||||+|||||.
T Consensus 3 ~pVPKrk~SksRr~~RRsh~~l~~p~l~~C~~CG~~~lpHrvC~~CG~YkGr~Vis 58 (58)
T d2zjrz1 3 HPVPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLSHHICPNCGYYDGRQVLA 58 (58)
T ss_dssp CSCCSSCCCTTHHHHHTTTCCCCCCCCEECTTTCCEECTTBCCTTTCBSSSBCSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEECCCCCCCCCEEEEC
T ss_conf 78777866710023132013203885147899999756605679888399999309
No 3
>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=4.4e-26 Score=154.99 Aligned_cols=55 Identities=51% Similarity=0.726 Sum_probs=52.1
Q ss_pred CCCCCCCCHHCCCCHHHHHCCCC-CCEEECCCCCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf 78878876100174122310268-837887899782440464257786768796434
Q gi|254780361|r 2 AVPKRKTSPSKRGMRRSADALTP-PAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVL 57 (61)
Q Consensus 2 AVPKrK~S~sr~~~RRsh~~l~~-p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~ 57 (61)
||||+|+|+||+++||||++|.. |+|+.||+||++++||+||+ ||||+|||||+.
T Consensus 1 AVPKrK~Sksr~~~RRah~~l~~~~~~~~c~~CG~~~lpH~vC~-cG~Ykgr~Vi~k 56 (56)
T d2qam01 1 AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITA-DGYYRGRKVIAK 56 (56)
T ss_dssp CCCSSCCCHHHHHHHTTTTCCCCCSCCEECSSSCCEECTTSCCT-TSCCSSSCCSCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCEECC-CCCCCCEEEEEC
T ss_conf 98777787300632000034116874147889999705727889-977989982509
No 4
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=92.06 E-value=0.026 Score=30.43 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=19.4
Q ss_pred CEEECCCCCCEEEEEEEECCCCC
Q ss_conf 37887899782440464257786
Q gi|254780361|r 26 AYVEDKKSGELRRPHHVDMKTGL 48 (61)
Q Consensus 26 ~l~~c~~cG~~~~~H~vc~~cG~ 48 (61)
.|..|++||.+.| ..+||.||-
T Consensus 3 klrkC~~C~~YTL-~~~CP~CG~ 24 (55)
T d2apob1 3 RMKKCPKCGLYTL-KEICPKCGE 24 (55)
T ss_dssp CCEECTTTCCEES-SSBCSSSCS
T ss_pred CEEECCCCCCEEC-CCCCCCCCC
T ss_conf 3234873665433-452767888
No 5
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=90.59 E-value=0.044 Score=29.26 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=18.4
Q ss_pred EEECCCCCCEEEEEEEECCCCC
Q ss_conf 7887899782440464257786
Q gi|254780361|r 27 YVEDKKSGELRRPHHVDMKTGL 48 (61)
Q Consensus 27 l~~c~~cG~~~~~H~vc~~cG~ 48 (61)
|..|++||.+.+ -.+||.||-
T Consensus 2 lrkC~~C~~YTL-~~~CP~CG~ 22 (52)
T d2ey4e1 2 IRKCPKCGRYTL-KEVCPVCGE 22 (52)
T ss_dssp CEECTTTCCEES-SSBCTTTCC
T ss_pred CCCCCCCCCEEC-CCCCCCCCC
T ss_conf 530774666444-452867888
No 6
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}
Probab=84.56 E-value=0.14 Score=26.62 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=16.7
Q ss_pred EECCCCCCEEE------EEEEECCCCCC
Q ss_conf 88789978244------04642577867
Q gi|254780361|r 28 VEDKKSGELRR------PHHVDMKTGLY 49 (61)
Q Consensus 28 ~~c~~cG~~~~------~H~vc~~cG~Y 49 (61)
+.||+||+... .-.|||+|||.
T Consensus 3 ~~C~~C~~~~~~~~l~~~~~vC~~C~~h 30 (263)
T d2f9yb1 3 TKCDSCGQVLYRAELERNLEVCPKCDHH 30 (263)
T ss_dssp ECCTTTCCCEETTHHHHTTTBCTTTCCB
T ss_pred CCCCCCCCEEEHHHHHHHCCCCCCCCCC
T ss_conf 7178776502699999858899399899
No 7
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Probab=82.76 E-value=0.25 Score=25.32 Aligned_cols=30 Identities=10% Similarity=-0.098 Sum_probs=20.9
Q ss_pred CCCCEEECCCCCCEEE-----EEEEECCCCCCCCE
Q ss_conf 6883788789978244-----04642577867687
Q gi|254780361|r 23 TPPAYVEDKKSGELRR-----PHHVDMKTGLYRGR 52 (61)
Q Consensus 23 ~~p~l~~c~~cG~~~~-----~H~vc~~cG~YkGr 52 (61)
-.+.+..|++||-..- -+..||.||-=+.+
T Consensus 511 in~~~~~C~~Cg~~~~~~~~~~~~~CP~CGs~~~~ 545 (561)
T d1hk8a_ 511 VNMPVDKCFTCGSTHEMTPTENGFVCSICGETDPK 545 (561)
T ss_dssp EECCEEEETTTCCCSCCEECSSSEECSSSCCCCGG
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 47798547788875864357778529389899877
No 8
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=82.66 E-value=0.13 Score=26.75 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=28.4
Q ss_pred HCCCCCCEEECCCCCCEEE------EEEEECCCCCCCCEEEEEEE
Q ss_conf 1026883788789978244------04642577867687964342
Q gi|254780361|r 20 DALTPPAYVEDKKSGELRR------PHHVDMKTGLYRGRQVFVLK 58 (61)
Q Consensus 20 ~~l~~p~l~~c~~cG~~~~------~H~vc~~cG~YkGr~Vi~~~ 58 (61)
.++.+..-.+||+||...+ -..||..||+--.-.+|+..
T Consensus 4 ~~~~~~~~~~Cp~Cgs~~ii~D~~~Ge~vC~~CG~Vlee~~ID~g 48 (58)
T d1dl6a_ 4 SRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVG 48 (58)
T ss_dssp CSCCCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCEECCCCCCEECCCCCCCC
T ss_conf 423255666897997987778878882850359989054133689
No 9
>d2gnra1 b.40.4.15 (A:8-144) Hypothetical protein SSO2064 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=78.39 E-value=0.63 Score=23.21 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=18.7
Q ss_pred CCEEECCCCCCEEEEEE-EECCCCC
Q ss_conf 83788789978244046-4257786
Q gi|254780361|r 25 PAYVEDKKSGELRRPHH-VDMKTGL 48 (61)
Q Consensus 25 p~l~~c~~cG~~~~~H~-vc~~cG~ 48 (61)
-.+..|+.||....|-+ +|+.||-
T Consensus 37 L~~~~C~~CG~v~~Ppr~~Cp~C~s 61 (137)
T d2gnra1 37 IIGSKCSKCGRIFVPARSYCEHCFV 61 (137)
T ss_dssp CEEEECTTTCCEEESCCSEETTTTE
T ss_pred EEEEECCCCCCEEECCCCCCCCCCC
T ss_conf 9999818999888575046799899
No 10
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=72.11 E-value=0.55 Score=23.50 Aligned_cols=23 Identities=4% Similarity=-0.256 Sum_probs=16.4
Q ss_pred CEEECCCCCCEEEE----EEEECCCCC
Q ss_conf 37887899782440----464257786
Q gi|254780361|r 26 AYVEDKKSGELRRP----HHVDMKTGL 48 (61)
Q Consensus 26 ~l~~c~~cG~~~~~----H~vc~~cG~ 48 (61)
+|-.||+|+..--. --|||.||+
T Consensus 2 ~lP~CP~C~seytYedg~l~vCPeC~h 28 (38)
T d2akla2 2 TLPPCPQCNSEYTYEDGALLVCPECAH 28 (38)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTE
T ss_pred CCCCCCCCCCCCEECCCCEEECCCCCC
T ss_conf 788688789803573799978975557
No 11
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.54 E-value=1.2 Score=21.70 Aligned_cols=28 Identities=4% Similarity=-0.141 Sum_probs=21.4
Q ss_pred CCCCCEEECCCCCCEE-----EEEEEECCCCCC
Q ss_conf 2688378878997824-----404642577867
Q gi|254780361|r 22 LTPPAYVEDKKSGELR-----RPHHVDMKTGLY 49 (61)
Q Consensus 22 l~~p~l~~c~~cG~~~-----~~H~vc~~cG~Y 49 (61)
...|++.-||+|+.+. -+|-.|+.||+.
T Consensus 13 ~~~~~~k~CP~C~~~~~~~~~~~~~~C~~C~~~ 45 (73)
T d2ct7a1 13 MRDPKFLWCAQCSFGFIYEREQLEATCPQCHQT 45 (73)
T ss_dssp CSCCCEECCSSSCCCEECCCSCSCEECTTTCCE
T ss_pred HHCCCCCCCCCCCCEEEECCCCCEEECCCCCCE
T ss_conf 878798899999997687799998786998991
No 12
>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=66.07 E-value=1.7 Score=20.96 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.5
Q ss_pred CCCEEECCCCCC--EEEEEEEECCCCC
Q ss_conf 883788789978--2440464257786
Q gi|254780361|r 24 PPAYVEDKKSGE--LRRPHHVDMKTGL 48 (61)
Q Consensus 24 ~p~l~~c~~cG~--~~~~H~vc~~cG~ 48 (61)
..+-+.|.-||. +++....|.+|||
T Consensus 13 ~ktH~~CrRCGr~syH~qK~~CasCGy 39 (56)
T d1vqo11 13 TTTHTKCRRCGEKSYHTKKKVCSSCGF 39 (56)
T ss_dssp CCCEEECTTTCSEEEETTTTEETTTCT
T ss_pred CCCCCHHHCCCCHHHHHCCCCCCCCCC
T ss_conf 875166435582455540452553588
No 13
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=55.96 E-value=1.8 Score=20.86 Aligned_cols=31 Identities=10% Similarity=-0.064 Sum_probs=21.0
Q ss_pred EECCCCCCEEE------EEEEECCCCCCCCEEEEEEE
Q ss_conf 88789978244------04642577867687964342
Q gi|254780361|r 28 VEDKKSGELRR------PHHVDMKTGLYRGRQVFVLK 58 (61)
Q Consensus 28 ~~c~~cG~~~~------~H~vc~~cG~YkGr~Vi~~~ 58 (61)
..||+||...+ --.||.+||+--.-.+|+.-
T Consensus 6 ~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~Viee~~iD~g 42 (50)
T d1pfta_ 6 KVCPACESAELIYDPERGEIVCAKCGYVIEENIIDMG 42 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCCC
T ss_pred CCCCCCCCCCEEEECCCCEEECCCCCCEECCCCCCCC
T ss_conf 3484887983788878790850049869252434589
No 14
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}
Probab=54.94 E-value=1.7 Score=20.98 Aligned_cols=31 Identities=13% Similarity=-0.051 Sum_probs=23.0
Q ss_pred EECCCCCCEEEEEEEECCCC-CCCCEEEEEEE
Q ss_conf 88789978244046425778-67687964342
Q gi|254780361|r 28 VEDKKSGELRRPHHVDMKTG-LYRGRQVFVLK 58 (61)
Q Consensus 28 ~~c~~cG~~~~~H~vc~~cG-~YkGr~Vi~~~ 58 (61)
-.||.||...-.---|..|| .|.--..|+.+
T Consensus 3 G~CP~C~~~~a~GDqCe~CG~~~~p~eLinP~ 34 (35)
T d1pfva3 3 GTCPKCKSPDQYGDNCEVCGATYSPTELIEPK 34 (35)
T ss_dssp EECTTTCCSSEETTBCTTTCCBCCGGGSEEEE
T ss_pred EECCCCCCCCCCCCCHHHCCCCCCHHHHCCCC
T ss_conf 67979979665465277708707899952889
No 15
>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]}
Probab=48.85 E-value=3 Score=19.65 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=15.1
Q ss_pred EECCCCCC--EEEEE---EEECCCCCC
Q ss_conf 88789978--24404---642577867
Q gi|254780361|r 28 VEDKKSGE--LRRPH---HVDMKTGLY 49 (61)
Q Consensus 28 ~~c~~cG~--~~~~H---~vc~~cG~Y 49 (61)
-.||+||. +.--| ..|..|||-
T Consensus 19 k~CP~CG~GvFmA~H~dR~~CGKCgyT 45 (55)
T d2k4xa1 19 RFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 749599995774125897663477561
No 16
>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}
Probab=42.54 E-value=1.3 Score=21.61 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=13.5
Q ss_pred ECCCCCCEEEE--------EEEECCCCCC
Q ss_conf 87899782440--------4642577867
Q gi|254780361|r 29 EDKKSGELRRP--------HHVDMKTGLY 49 (61)
Q Consensus 29 ~c~~cG~~~~~--------H~vc~~cG~Y 49 (61)
.|.+||...-| +.+|..||.|
T Consensus 2 ~C~nC~tt~Tp~WRr~~~G~~lCNACGl~ 30 (42)
T d2vuti1 2 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 30 (42)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred CCCCCCCCCCCCCEECCCCCCCHHHHHHH
T ss_conf 48788997796440089998822456589
No 17
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=41.81 E-value=5.2 Score=18.39 Aligned_cols=27 Identities=4% Similarity=-0.027 Sum_probs=18.5
Q ss_pred CEEECCCCCCEEE---EEEEECCCCCCCCE
Q ss_conf 3788789978244---04642577867687
Q gi|254780361|r 26 AYVEDKKSGELRR---PHHVDMKTGLYRGR 52 (61)
Q Consensus 26 ~l~~c~~cG~~~~---~H~vc~~cG~YkGr 52 (61)
..=.|.+||-... +=-+||.||.=++.
T Consensus 7 ~~W~C~~CGyi~~g~~aP~~CPvC~~p~~~ 36 (44)
T d1lkoa2 7 TKWRCRNCGYVHEGTGAPELCPACAHPKAH 36 (44)
T ss_dssp EEEEETTTCCEEEEEECCSBCTTTCCBGGG
T ss_pred EEEECCCCCCEEECCCCCCCCCCCCCCHHH
T ss_conf 488838899587778798768799885799
No 18
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=41.23 E-value=1.6 Score=21.03 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=15.2
Q ss_pred EECCCCCCEEEE--------EEEECCCCCC
Q ss_conf 887899782440--------4642577867
Q gi|254780361|r 28 VEDKKSGELRRP--------HHVDMKTGLY 49 (61)
Q Consensus 28 ~~c~~cG~~~~~--------H~vc~~cG~Y 49 (61)
..|.|||...-| +.+|-.||.|
T Consensus 5 ~~C~nCgt~~Tp~WRr~~~G~~lCNACGl~ 34 (66)
T d3gata_ 5 TVCSNCQTSTTTLWRRSPMGDPVCNACGLY 34 (66)
T ss_dssp CCCTTTCCCCCSSEEECTTSCEEEHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 998898998885533189998032046789
No 19
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=40.89 E-value=2.1 Score=20.42 Aligned_cols=29 Identities=7% Similarity=-0.146 Sum_probs=20.1
Q ss_pred EECCCCCCEEEEEEEECCCCC-CCCEEEEE
Q ss_conf 887899782440464257786-76879643
Q gi|254780361|r 28 VEDKKSGELRRPHHVDMKTGL-YRGRQVFV 56 (61)
Q Consensus 28 ~~c~~cG~~~~~H~vc~~cG~-YkGr~Vi~ 56 (61)
-.||.||...-.---|..||. |.-...|+
T Consensus 3 G~CP~C~~~~a~GDqCe~CG~~~~p~eLin 32 (35)
T d1rqga3 3 GTCPYCGAEDQKGDQCEVCGRPLTPEILIN 32 (35)
T ss_dssp SBCSSSCCSCCCTTTCSSSCCCCCTTSSBS
T ss_pred EECCCCCCCCCCCCCHHHCCCCCCHHHHCC
T ss_conf 779799897540762345678468889407
No 20
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=39.10 E-value=11 Score=16.76 Aligned_cols=26 Identities=8% Similarity=-0.215 Sum_probs=17.2
Q ss_pred CCEEECCCCCCEEEE--EEEECCCCCCC
Q ss_conf 837887899782440--46425778676
Q gi|254780361|r 25 PAYVEDKKSGELRRP--HHVDMKTGLYR 50 (61)
Q Consensus 25 p~l~~c~~cG~~~~~--H~vc~~cG~Yk 50 (61)
..+-.|++||....- =-.||.||.=+
T Consensus 3 ~~~~~C~vCG~i~~g~~P~~CPvCg~~~ 30 (37)
T d1nnqa2 3 KKVYICPICGYTAVDEAPEYCPVCGAPK 30 (37)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCBG
T ss_pred CCEEECCCCCCEECCCCCCCCCCCCCCH
T ss_conf 7679899899886187788488899857
No 21
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=38.85 E-value=10 Score=16.84 Aligned_cols=24 Identities=4% Similarity=-0.229 Sum_probs=16.7
Q ss_pred CEEECCCCCCEEE--EEEEECCCCCC
Q ss_conf 3788789978244--04642577867
Q gi|254780361|r 26 AYVEDKKSGELRR--PHHVDMKTGLY 49 (61)
Q Consensus 26 ~l~~c~~cG~~~~--~H~vc~~cG~Y 49 (61)
.+-+|++||-... +=-.||.||.=
T Consensus 4 ~~~vC~vCGyi~~g~~Pe~CPvCg~~ 29 (36)
T d1yuza2 4 KFHLCPICGYIHKGEDFEKCPICFRP 29 (36)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCB
T ss_pred CEEECCCCCCEEECCCCCCCCCCCCC
T ss_conf 88978989998628888848889986
No 22
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=30.08 E-value=14 Score=16.17 Aligned_cols=29 Identities=21% Similarity=0.032 Sum_probs=19.0
Q ss_pred EECCCCCCEEE--------------------EEEEECCCCC--CCCEEEEE
Q ss_conf 88789978244--------------------0464257786--76879643
Q gi|254780361|r 28 VEDKKSGELRR--------------------PHHVDMKTGL--YRGRQVFV 56 (61)
Q Consensus 28 ~~c~~cG~~~~--------------------~H~vc~~cG~--YkGr~Vi~ 56 (61)
..||+|..+.. ...-|+.|.. |+||.+|.
T Consensus 296 ~lCp~Ck~~~~~~~~~~~~~~~~~~~~~~~~~~~GC~~C~~~Gy~GR~~v~ 346 (401)
T d1p9ra_ 296 TLCPDCKEPYEADKEQRKLFDSKKKEPLILYRATGCPKCNHKGYRGRTGIH 346 (401)
T ss_dssp EECTTTCEEEECCHHHHTTC-----CCCEEEECCCCSSSCSSSEEEEEEEE
T ss_pred HHCCCCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEE
T ss_conf 218886768899999996235454566379808996303799888732999
No 23
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}
Probab=28.51 E-value=15 Score=15.96 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=12.2
Q ss_pred CCCCEEECCCCCCEEE
Q ss_conf 6883788789978244
Q gi|254780361|r 23 TPPAYVEDKKSGELRR 38 (61)
Q Consensus 23 ~~p~l~~c~~cG~~~~ 38 (61)
+.+..+.||+||....
T Consensus 2 ~~~~~v~CP~C~k~~~ 17 (65)
T d1lv3a_ 2 SETITVNCPTCGKTVV 17 (65)
T ss_dssp CCCCEEECTTTCCEEE
T ss_pred CCCCEEECCCCCCCCC
T ss_conf 9873504889998344
No 24
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.51 E-value=4.6 Score=18.66 Aligned_cols=10 Identities=40% Similarity=0.590 Sum_probs=7.5
Q ss_pred EEEECCCCCC
Q ss_conf 4642577867
Q gi|254780361|r 40 HHVDMKTGLY 49 (61)
Q Consensus 40 H~vc~~cG~Y 49 (61)
+.+|-.||.|
T Consensus 23 ~~LCNACGl~ 32 (39)
T d1y0ja1 23 HYLCNACGLY 32 (39)
T ss_dssp CEECSSHHHH
T ss_pred CEEEHHHHHH
T ss_conf 9831776788
No 25
>d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]}
Probab=27.60 E-value=13 Score=16.40 Aligned_cols=32 Identities=6% Similarity=-0.066 Sum_probs=18.7
Q ss_pred CCCEEECCCCCCEEEEEEEECCCCC------CCCEEEEE
Q ss_conf 8837887899782440464257786------76879643
Q gi|254780361|r 24 PPAYVEDKKSGELRRPHHVDMKTGL------YRGRQVFV 56 (61)
Q Consensus 24 ~p~l~~c~~cG~~~~~H~vc~~cG~------YkGr~Vi~ 56 (61)
....-.|.+|+-..-. -.||+||. |.|-.+|-
T Consensus 6 g~~~rAC~~C~~i~~~-~~CpnC~s~~~S~~~~G~v~i~ 43 (67)
T d1ryqa_ 6 GSSEKACRHCHYITSE-DRCPVCGSRDLSEEWFDLVIIV 43 (67)
T ss_dssp ---CEEETTTCBEESS-SSCTTTCCCCEESCEEEEEEES
T ss_pred CCCCHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCEEEEE
T ss_conf 7517467618875688-8797986976777706489997
No 26
>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.30 E-value=7.5 Score=17.56 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=11.8
Q ss_pred EEECCC-C---CCCCEEEEEE
Q ss_conf 642577-8---6768796434
Q gi|254780361|r 41 HVDMKT-G---LYRGRQVFVL 57 (61)
Q Consensus 41 ~vc~~c-G---~YkGr~Vi~~ 57 (61)
..|..| | +|+||.|+.+
T Consensus 20 syca~CDg~a~~frgk~V~Vv 40 (130)
T d1vdca2 20 SACAVCDGAAPIFRNKPLAVI 40 (130)
T ss_dssp ESCHHHHTTSGGGTTSEEEEE
T ss_pred EEEEEECCCHHHHCCCEEEEE
T ss_conf 999980575577579889997
No 27
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.11 E-value=22 Score=15.12 Aligned_cols=21 Identities=14% Similarity=-0.115 Sum_probs=13.5
Q ss_pred EECCCCCCE---------------EEEEEEECCCCC
Q ss_conf 887899782---------------440464257786
Q gi|254780361|r 28 VEDKKSGEL---------------RRPHHVDMKTGL 48 (61)
Q Consensus 28 ~~c~~cG~~---------------~~~H~vc~~cG~ 48 (61)
..||.||.. .---.+|.+||+
T Consensus 24 ~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h 59 (72)
T d1twfi2 24 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSH 59 (72)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCC
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCC
T ss_conf 999797798579999514766788548999189989
No 28
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.69 E-value=20 Score=15.36 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=16.3
Q ss_pred CCCCCEEECCCCCCEEEEEEEE
Q ss_conf 2688378878997824404642
Q gi|254780361|r 22 LTPPAYVEDKKSGELRRPHHVD 43 (61)
Q Consensus 22 l~~p~l~~c~~cG~~~~~H~vc 43 (61)
...+.+-.||.||...+|+-|.
T Consensus 137 ~~~~~~p~C~~Cgg~lrP~Vv~ 158 (249)
T d1m2ka_ 137 PKIPPLPKCDKCGSLLRPGVVW 158 (249)
T ss_dssp CCSSSCCBCSSSSSBEEEEECC
T ss_pred CCCCCCCCCCCCCCEECCCEEE
T ss_conf 3378999764589971124411
No 29
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.38 E-value=23 Score=15.03 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=13.8
Q ss_pred CCEEECCCCCCEEEEEEEECCCC
Q ss_conf 83788789978244046425778
Q gi|254780361|r 25 PAYVEDKKSGELRRPHHVDMKTG 47 (61)
Q Consensus 25 p~l~~c~~cG~~~~~H~vc~~cG 47 (61)
.+...|-.||.....=..|++||
T Consensus 49 ~~~l~CH~Cg~~~~~~~~C~~Cg 71 (74)
T d2dkta1 49 VKEVQCINCEKLQHAQQTCEDCS 71 (74)
T ss_dssp CCCEEESSSCCEECSCSBCSSSC
T ss_pred CCEEEECCCCCCCCCCCCCCCCC
T ss_conf 88798356797443788487878
Done!