RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780361|ref|YP_003064774.1| ribosomal protein L32
[Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)



>2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin,
          mRNA, translation; 2.8A {Thermus thermophilus} (5:)
          Length = 60

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 1  MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQV 54
            VPK+KTS ++R  RRS  ALTPP  V   +   ++ PH V  + G Y GR+V
Sbjct: 4  HPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRKV 57


>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal
          subunit, ribonucleoprotein, RNA-binding, rRNA-binding,
          tRNA-binding, methylation; 2.91A {Deinococcus
          radiodurans} (Z:)
          Length = 60

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 26/54 (48%), Positives = 30/54 (55%)

Query: 1  MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQV 54
            VPK+KTS SKR MRRS  ALT P   E  +    +  HH+    G Y GRQV
Sbjct: 4  HPVPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLSHHICPNCGYYDGRQV 57


>3i1n_0 50S ribosomal protein L32; ribosome structure, protein-RNA
          complex, acetylation, ribonucleoprotein, ribosomal
          protein, RNA-binding, rRNA- binding, methylation; 3.19A
          {Escherichia coli k-12} PDB: 1vs8_0 3e1b_T 3e1d_T
          1vs6_0 3i1p_0 3i1r_0 3i1t_0 3i20_0 3i22_0 2qam_0*
          1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0*
          2qao_0* 2qba_0* 2qbc_0* ... (0:23-57)
          Length = 35

 Score = 32.4 bits (74), Expect = 0.022
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 23 TPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVF 55
             +   DK SGE    HH+    G YRGR+V 
Sbjct: 2  AVTSLSVDKTSGEKHLRHHIT-ADGYYRGRKVI 33


>3bbo_2 Ribosomal protein L32; large ribosomal subunit, spinach
          chloroplast ribosome, ribonucleoprotein particle,
          macromolecular complex; 9.40A {Spinacea oleracea} (2:)
          Length = 57

 Score = 28.5 bits (64), Expect = 0.34
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 1  MAVPKRKTSPSKRGMRRS 18
          MAVPK++TS  K+ +R++
Sbjct: 1  MAVPKKRTSIYKKRIRKN 18


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 457,701
Number of extensions: 15221
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 5
Length of query: 61
Length of database: 4,956,049
Length adjustment: 30
Effective length of query: 31
Effective length of database: 3,941,899
Effective search space: 122198869
Effective search space used: 122198869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)