RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780361|ref|YP_003064774.1| ribosomal protein L32
[Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)



>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 58

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 26/54 (48%), Positives = 30/54 (55%)

Query: 1  MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQV 54
            VPK+KTS SKR MRRS  ALT P   E  +    +  HH+    G Y GRQV
Sbjct: 3  HPVPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLSHHICPNCGYYDGRQV 56


>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus
          thermophilus [TaxId: 274]}
          Length = 59

 Score = 77.0 bits (190), Expect = 4e-16
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 1  MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQV 54
            VPK+KTS ++R  RRS  ALTPP  V   +   ++ PH V  + G Y GR+V
Sbjct: 3  HPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRKV 56


>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia
          coli [TaxId: 562]}
          Length = 56

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 2  AVPKRKTSPSKRGMRRSADALT-PPAYVEDKKSGELRRPHHVDMKTGLYRGRQVF 55
          AV + K + SKRGMRRS DALT   +   DK SGE    HH+    G YRGR+V 
Sbjct: 1  AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT-ADGYYRGRKVI 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 209,075
Number of extensions: 6953
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 3
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (21.9 bits)