HHsearch alignment for GI: 254780363 and conserved domain: PRK05464
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional.
Probab=100.00 E-value=5.6e-45 Score=320.69 Aligned_cols=238 Identities=18% Similarity=0.291 Sum_probs=183.8
Q ss_pred CCCCCCCC-----CCCEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEECC-----------------------
Q ss_conf 77443665-----310689888847998699998077--899839971799998439-----------------------
Q gi|254780363|r 4 VSPKLPVN-----VYCESVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLMVN----------------------- 53 (264)
Q Consensus 4 ~~~~~p~~-----~~~~~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~~~----------------------- 53 (264)
T Consensus 119 m~i~vp~e~~~vk~we~~Vvsn~nvatfIKEl~l~lp~ge~~~fkaG~yiQi~iP~~~~~~~~~di~~~y~~dW~~~~~~ 198 (408)
T PRK05464 119 MKIELPEEIFGVKKWECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWEKFGLF 198 (408)
T ss_pred CEEECCHHHHCCCCEEEEEEECCCCHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 66874779806663589999756522224336896789974520258779996376314645135537778888754821
Q ss_pred ------CEEEEEEEEECCCCCCC-CEEEEEEE---------ECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCE
Q ss_conf ------85887665422857688-60589999---------438885661001238851002578873216432235866
Q gi|254780363|r 54 ------GRRISRAYSMASPCWDD-KLEFFSIK---------VEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNR 117 (264)
Q Consensus 54 ------g~~~~R~YSiaS~p~~~-~le~~i~~---------v~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~ 117 (264)
T Consensus 199 ~~~~~~~e~~~RaYSmAn~p~e~~~i~~niRiatpPp~~~~vppG~~Ssyl~~LK~GD~V~isG-P~G~Ffl~d--s~~~ 275 (408)
T PRK05464 199 RLVSKVDEPTIRAYSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISG-PFGEFFAKD--TDAE 275 (408)
T ss_pred CCCCCCCCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC-CCCCEEECC--CCCC
T ss_conf 1103587465531213578676884899999616998878899722114452389998899977-864427558--9987
Q ss_pred EEEEECCCCHHHHHHHHHH-HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCC
Q ss_conf 9999758672778998876-3410357857999951998898733566898986445777405884389820454--444
Q gi|254780363|r 118 LYLFSTGTGIAPFVSVIRD-PGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE--DYL 194 (264)
Q Consensus 118 lilIAgGtGItP~~sii~~-~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e--~~~ 194 (264)
T Consensus 276 mVfIaGGtGmAPlrS~I~~~l~~~~~~R~I~l~yGARs~~DL~y~de~~~La~e~--------pNF~y~~aLS~p~~ed~ 347 (408)
T PRK05464 276 MVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSLREMFYQEDFDQLAAEN--------PNFVWHVALSDPLPEDN 347 (408)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC--------CCCEEEEEECCCCCCCC
T ss_conf 7999358666748999999998608887569999647657623379999999878--------99579999788896668
Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 465677543110478852899887313789996898999999999998698531567995099998
Q gi|254780363|r 195 YKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGTFVVER 260 (264)
Q Consensus 195 ~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~~~~E~ 260 (264)
T Consensus 348 W~G~-tGfIh~-vl~~~yL~dh~~ped~e~YlCGPP~Mi~Av~~~L~~lGV~~------E~I~~D~ 405 (408)
T PRK05464 348 WTGY-TGFIHN-VLYENYLKDHPAPEDCEYYMCGPPMMNAAVIKMLKDLGVED------ENILLDD 405 (408)
T ss_pred CCCC-CCCCCH-HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCH------HHEEECC
T ss_conf 8887-376446-99998986378855868999899899999999999869998------9964335