HHsearch alignment for GI: 254780363 and conserved domain: PRK08345
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional.
Probab=100.00 E-value=1.1e-35 Score=258.42 Aligned_cols=227 Identities=22% Similarity=0.366 Sum_probs=172.4
Q ss_pred CCCCCCCCCEEEEEEEECCCCEEEEEE--ECC---CCCCCCCCCEEEEEEECCCEEEEEEEEECCCCC-CCCEEEEEEEE
Q ss_conf 443665310689888847998699998--077---899839971799998439858876654228576-88605899994
Q gi|254780363|r 6 PKLPVNVYCESVISIKHYTDRLFRFCI--TRP---KSFRFRSGEFVMLGLMVNGRRISRAYSMASPCW-DDKLEFFSIKV 79 (264)
Q Consensus 6 ~~~p~~~~~~~V~~v~~~t~~~~~~~l--~~~---~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~-~~~le~~i~~v 79 (264)
T Consensus 2 ~~~~~~p~~~~i~~~~~~t~~~~~f~l~~~~p~ia~~f~~~PGQFv~v~v~g~ge---~PiSi~~~~~~~g~l~~~~r~v 78 (292)
T PRK08345 2 NDNPYALYRAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGE---VPISICSSPTRKGFFELCIRRA 78 (292)
T ss_pred CCCCCCCCEEEEEEEHHCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCC---CCEEEECCCCCCCEEEEEEEEE
T ss_conf 9985568206999843249870599999627120345860899859999689996---1058715688899899999821
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHH
Q ss_conf 388856610012388510025788732-1643223586699997586727789988763410-35785799995199889
Q gi|254780363|r 80 EQGPLTTHLQNIQPGDTILLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTY-EKFDEVIVTQTCRQVVE 157 (264)
Q Consensus 80 ~~G~~S~~L~~l~~Gd~i~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~-~~~~~i~L~~g~R~~~d 157 (264)
T Consensus 79 --G~~T~~L~~lk~Gd~l~v~G-PlG~gf~~~~~-~~~~v~lVaGGiGiaPl~~~~~~~l~~~~~~~~v~~i~GaR~~~d 154 (292)
T PRK08345 79 --GRVTTVVHRLKEGDIVGVRG-PYGNGFPVDEM-EGMDLLLIAGGLGMAPLRSVLLYAMDNRGKYGNITLIYGAKYYED 154 (292)
T ss_pred --CHHHHHHHCCCCCCEEEEEE-CCCCCEECCCC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHH
T ss_conf --86999996289999999972-35786304102-695199994254545138999999872155686699997188798
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCCCCCCCC---CCCHHHHHCCCCCCCHHCCEEEEECCHHH
Q ss_conf 873356689898644577740588438982045444--4465677543---11047885289988731378999689899
Q gi|254780363|r 158 LQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDY--LYKGRITNHI---LSGEFYRNMDLSPLNPDTDRIMICGSPTM 232 (264)
Q Consensus 158 l~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~--~~~grit~~i---~~g~l~~~~~~~~~~~~~~~vyiCGpp~M 232 (264)
T Consensus 155 llf~~E~~~~~~~~~--------~~~~~~~~~~dd~~~g~~g~~~~~~~~~~~g~v~~~l~~~~~~~~~~~v~~CGP~~M 226 (292)
T PRK08345 155 LLFYDELIKDLAEAE--------NVKIIQSVTRDPEWPGCHGLPQGFIEKVCKGVVTDLFREANTDPKNTYAAICGPPVM 226 (292)
T ss_pred HHHHHHHHHHHHHCC--------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCHHH
T ss_conf 321898887653203--------441289995179998650540442121223303223334215745609999999999
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999999869853
Q gi|254780363|r 233 IVDMKDLLIAKKFRE 247 (264)
Q Consensus 233 i~~v~~~L~~~G~~~ 247 (264)
T Consensus 227 mk~v~~~~~~~gi~~ 241 (292)
T PRK08345 227 YKFVFKELINRGYRP 241 (292)
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999999759984