HHsearch alignment for GI: 254780363 and conserved domain: TIGR01941
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=100.00 E-value=1.6e-35 Score=257.33 Aligned_cols=234 Identities=18% Similarity=0.310 Sum_probs=171.2
Q ss_pred CCCCCCCCCCCCE-----EEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEE------------------------
Q ss_conf 7774436653106-----89888847998699998077--8998399717999984------------------------
Q gi|254780363|r 3 DVSPKLPVNVYCE-----SVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLM------------------------ 51 (264)
Q Consensus 3 ~~~~~~p~~~~~~-----~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~------------------------ 51 (264)
T Consensus 115 Dm~i~~~Ee~fgvk~WeC~V~SN~N~ATFIKEL~l~~p~g~~v~FkaGgY~Qi~~P~~~v~y~Dfd~~~~~~Yr~DW~kf 194 (425)
T TIGR01941 115 DMSIEIPEEVFGVKKWECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEVPAHKVKYADFDQTIQPEYRGDWEKF 194 (425)
T ss_pred CCEEEECEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHCCCHHHC
T ss_conf 87787320342311013478777985136789888878888304357864788616723312310110121231663250
Q ss_pred -------CC----CEEEEEEEEECCCCCCCCEEEEEEEE-----------------CCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf -------39----85887665422857688605899994-----------------388856610012388510025788
Q gi|254780363|r 52 -------VN----GRRISRAYSMASPCWDDKLEFFSIKV-----------------EQGPLTTHLQNIQPGDTILLHKKS 103 (264)
Q Consensus 52 -------~~----g~~~~R~YSiaS~p~~~~le~~i~~v-----------------~~G~~S~~L~~l~~Gd~i~i~~~p 103 (264)
T Consensus 195 ~~f~~~~~~~~lpae~~~rAYSmAnYP~E~~~i~lNvRIAtPP~~n~~~~~w~~~~p~G~~SSYifsLKpGDKv~~sG-P 273 (425)
T TIGR01941 195 NLFDLVSKVDQLPAEETVRAYSMANYPEEKGIIKLNVRIATPPFDNGKANKWNSDIPPGIMSSYIFSLKPGDKVTVSG-P 273 (425)
T ss_pred CCEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-C
T ss_conf 625477740335641024332023472417877999884188887676432346789872133377447987779977-8
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCHHHHHH-HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 73216432235866999975867277899-88763410357857999951998898733566898986445777405884
Q gi|254780363|r 104 TGTLVLDALIPGNRLYLFSTGTGIAPFVS-VIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKL 182 (264)
Q Consensus 104 ~G~f~~d~~~~~~~lilIAgGtGItP~~s-ii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~ 182 (264)
T Consensus 274 fGefF~kDt--daemvFigGGAGmap~RshIld~L~~lks~Rk~sfWYGARS~~E~fY~edf~~L~~e--------~pNF 343 (425)
T TIGR01941 274 FGEFFAKDT--DAEMVFIGGGAGMAPMRSHILDLLKRLKSKRKISFWYGARSKREIFYEEDFDQLEAE--------NPNF 343 (425)
T ss_pred CCCCEEEEC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH--------CCCC
T ss_conf 885302457--864389733735403689999998600236502455365212443224447889864--------8993
Q ss_pred EEEEECCCCC--CCCCC------CCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 3898204544--44465------677543110478852899887313789996898999999999998698531
Q gi|254780363|r 183 KFYRTVTQED--YLYKG------RITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREG 248 (264)
Q Consensus 183 ~~~~~~s~e~--~~~~g------rit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~ 248 (264)
T Consensus 344 ~~H~aLSdP~PEDnw~Gwdkddp~~tgFih~-vl~~nyLk~h~aPED~efYmCGPP~mn~av~kmL~~lGVe~~ 416 (425)
T TIGR01941 344 KWHVALSDPQPEDNWTGWDKDDPTYTGFIHN-VLYENYLKDHDAPEDCEFYMCGPPLMNAAVIKMLEDLGVERE 416 (425)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCH
T ss_conf 7999854868851006777678610247787-776423213778764255206883237999999885389700