HHsearch alignment for GI: 254780363 and conserved domain: TIGR02160
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit; InterPro: IPR011884 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=100.00 E-value=3.4e-44 Score=315.32 Aligned_cols=231 Identities=20% Similarity=0.337 Sum_probs=196.3
Q ss_pred CCEEEEEEEECCCCEEEEEEECCCC----CCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 1068988884799869999807789----983997179999843985887665422857688605899994388856610
Q gi|254780363|r 13 YCESVISIKHYTDRLFRFCITRPKS----FRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHL 88 (264)
Q Consensus 13 ~~~~V~~v~~~t~~~~~~~l~~~~~----~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L 88 (264)
T Consensus 2 h~L~VA~V~r~t~dAv~i~FevP~eL~~~Y~F~pGQ~l~Lk~~~dG~e~RRSYSIC~~~~~~~~rvAvk~~~GG~FS~wa 81 (371)
T TIGR02160 2 HALTVAEVRRLTADAVEISFEVPEELAEDYRFEPGQHLTLKAEVDGEELRRSYSICDAPAPGEIRVAVKKIEGGLFSTWA 81 (371)
T ss_pred CCCCCHHHHCCCCCCCEEEECCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEHHH
T ss_conf 87522132105711606841478357875046889345542000774113022221677989633889972897113211
Q ss_pred C-C-CCCCCEEECCCCCCCCCCCCCCCC-------------CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 0-1-238851002578873216432235-------------866999975867277899887634103578579999519
Q gi|254780363|r 89 Q-N-IQPGDTILLHKKSTGTLVLDALIP-------------GNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCR 153 (264)
Q Consensus 89 ~-~-l~~Gd~i~i~~~p~G~f~~d~~~~-------------~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R 153 (264)
T Consensus 82 ~d~Gir~GdtlEVM~-P~G~F~~~~~~~~lndaetiaqeaG~~hyvavAAGSGITP~lai~~tvLa~~p~S~ftLvY~Nr 160 (371)
T TIGR02160 82 NDEGIRAGDTLEVMA-PQGRFTSKLDAERLNDAETIAQEAGAGHYVAVAAGSGITPILAIAKTVLAAEPKSTFTLVYGNR 160 (371)
T ss_pred HCCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 118704488788716-7897788887220002568888606896899981787058999999874069952089996178
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC---CCCCCCCCCCCCCCHHHHHCCCCCCCHHC-CEEEEECC
Q ss_conf 988987335668989864457774058843898204544---44465677543110478852899887313-78999689
Q gi|254780363|r 154 QVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED---YLYKGRITNHILSGEFYRNMDLSPLNPDT-DRIMICGS 229 (264)
Q Consensus 154 ~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~---~~~~grit~~i~~g~l~~~~~~~~~~~~~-~~vyiCGp 229 (264)
T Consensus 161 ~~~~vMFa~~L~D-------LKd~yp~Rf~l~~vlSrE~~~~~ll~GRlD----~ekl~~-L~~~li~~~~~deaFlCGP 228 (371)
T TIGR02160 161 RSASVMFAEELAD-------LKDKYPQRFALLHVLSREEREAPLLSGRLD----GEKLRA-LLDSLIDVDEVDEAFLCGP 228 (371)
T ss_pred CCCCHHHHHHHHH-------HHCCHHHHHHHHHHHCCCCCCCCCCCCCCC----HHHHHH-HHHHHCCHHHCCEEEECCC
T ss_conf 8872778998987-------631204578998663121113641024227----899998-8532002100240011185
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
Q ss_conf 899999999999869853156799509999876
Q gi|254780363|r 230 PTMIVDMKDLLIAKKFREGSNSRPGTFVVERAF 262 (264)
Q Consensus 230 p~Mi~~v~~~L~~~G~~~~~~~~~g~~~~E~~~ 262 (264)
T Consensus 229 ~~mv~~~~~~L~a~G~~~------~~vh~E~F~ 255 (371)
T TIGR02160 229 AAMVDDAEDALKALGVPS------ERVHLELFT 255 (371)
T ss_pred HHHHHHHHHHHHHCCCCC------CCEEEEECC
T ss_conf 899999999997268962------254587504