HHsearch alignment for GI: 254780363 and conserved domain: TIGR02160

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit; InterPro: IPR011884 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=100.00  E-value=3.4e-44  Score=315.32  Aligned_cols=231  Identities=20%  Similarity=0.337  Sum_probs=196.3

Q ss_pred             CCEEEEEEEECCCCEEEEEEECCCC----CCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf             1068988884799869999807789----983997179999843985887665422857688605899994388856610
Q gi|254780363|r   13 YCESVISIKHYTDRLFRFCITRPKS----FRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHL   88 (264)
Q Consensus        13 ~~~~V~~v~~~t~~~~~~~l~~~~~----~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L   88 (264)
T Consensus         2 h~L~VA~V~r~t~dAv~i~FevP~eL~~~Y~F~pGQ~l~Lk~~~dG~e~RRSYSIC~~~~~~~~rvAvk~~~GG~FS~wa   81 (371)
T TIGR02160         2 HALTVAEVRRLTADAVEISFEVPEELAEDYRFEPGQHLTLKAEVDGEELRRSYSICDAPAPGEIRVAVKKIEGGLFSTWA   81 (371)
T ss_pred             CCCCCHHHHCCCCCCCEEEECCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEHHH
T ss_conf             87522132105711606841478357875046889345542000774113022221677989633889972897113211


Q ss_pred             C-C-CCCCCEEECCCCCCCCCCCCCCCC-------------CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             0-1-238851002578873216432235-------------866999975867277899887634103578579999519
Q gi|254780363|r   89 Q-N-IQPGDTILLHKKSTGTLVLDALIP-------------GNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCR  153 (264)
Q Consensus        89 ~-~-l~~Gd~i~i~~~p~G~f~~d~~~~-------------~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R  153 (264)
T Consensus        82 ~d~Gir~GdtlEVM~-P~G~F~~~~~~~~lndaetiaqeaG~~hyvavAAGSGITP~lai~~tvLa~~p~S~ftLvY~Nr  160 (371)
T TIGR02160        82 NDEGIRAGDTLEVMA-PQGRFTSKLDAERLNDAETIAQEAGAGHYVAVAAGSGITPILAIAKTVLAAEPKSTFTLVYGNR  160 (371)
T ss_pred             HCCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             118704488788716-7897788887220002568888606896899981787058999999874069952089996178


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC---CCCCCCCCCCCCCCHHHHHCCCCCCCHHC-CEEEEECC
Q ss_conf             988987335668989864457774058843898204544---44465677543110478852899887313-78999689
Q gi|254780363|r  154 QVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED---YLYKGRITNHILSGEFYRNMDLSPLNPDT-DRIMICGS  229 (264)
Q Consensus       154 ~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~---~~~~grit~~i~~g~l~~~~~~~~~~~~~-~~vyiCGp  229 (264)
T Consensus       161 ~~~~vMFa~~L~D-------LKd~yp~Rf~l~~vlSrE~~~~~ll~GRlD----~ekl~~-L~~~li~~~~~deaFlCGP  228 (371)
T TIGR02160       161 RSASVMFAEELAD-------LKDKYPQRFALLHVLSREEREAPLLSGRLD----GEKLRA-LLDSLIDVDEVDEAFLCGP  228 (371)
T ss_pred             CCCCHHHHHHHHH-------HHCCHHHHHHHHHHHCCCCCCCCCCCCCCC----HHHHHH-HHHHHCCHHHCCEEEECCC
T ss_conf             8872778998987-------631204578998663121113641024227----899998-8532002100240011185


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
Q ss_conf             899999999999869853156799509999876
Q gi|254780363|r  230 PTMIVDMKDLLIAKKFREGSNSRPGTFVVERAF  262 (264)
Q Consensus       230 p~Mi~~v~~~L~~~G~~~~~~~~~g~~~~E~~~  262 (264)
T Consensus       229 ~~mv~~~~~~L~a~G~~~------~~vh~E~F~  255 (371)
T TIGR02160       229 AAMVDDAEDALKALGVPS------ERVHLELFT  255 (371)
T ss_pred             HHHHHHHHHHHHHCCCCC------CCEEEEECC
T ss_conf             899999999997268962------254587504