HHsearch alignment for GI: 254780363 and conserved domain: TIGR03224

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.97  E-value=5.2e-30  Score=220.43  Aligned_cols=238  Identities=18%  Similarity=0.201  Sum_probs=167.3

Q ss_pred             CCCCCCEEEEEEEECCC-----CEEEEEEEC-CCCCCCCCCCEEEEEE---ECCCEE-EEEEEEECCCCC-----CCCEE
Q ss_conf             66531068988884799-----869999807-7899839971799998---439858-876654228576-----88605
Q gi|254780363|r    9 PVNVYCESVISIKHYTD-----RLFRFCITR-PKSFRFRSGEFVMLGL---MVNGRR-ISRAYSMASPCW-----DDKLE   73 (264)
Q Consensus         9 p~~~~~~~V~~v~~~t~-----~~~~~~l~~-~~~~~f~~GQ~v~i~~---~~~g~~-~~R~YSiaS~p~-----~~~le   73 (264)
T Consensus       139 ~~~p~~atv~gn~r~t~~~~~~d~~hivldfg~~~fpvlEGQSiGIIPPG~d~~GkPH~~RLYSIAS~R~Gd~~~~~tvS  218 (411)
T TIGR03224       139 VKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLA  218 (411)
T ss_pred             CCCCEEEEEECEEECCCCCCCCCEEEEEECCCCCCCCEECCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEE
T ss_conf             89973689964077145788763048997168985642257576464899898998461267885367578788997788


Q ss_pred             EEEEEEC--------CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH---HHCC
Q ss_conf             8999943--------8885661001238851002578873216432235866999975867277899887634---1035
Q gi|254780363|r   74 FFSIKVE--------QGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPG---TYEK  142 (264)
Q Consensus        74 ~~i~~v~--------~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~---~~~~  142 (264)
T Consensus       219 LcVrR~~~~~~g~~~~GVcSnyLCDlkpGd~V~itGP~Gk~FLLP~D-P~a~IIMIaTGTGIAPFRafl~rr~~~~~~g~  297 (411)
T TIGR03224       219 LTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPNH-PESSIMMICTGTGSAPMRAMTERRRRRRDHGE  297 (411)
T ss_pred             EEEEEEEECCCCCCCCCEEECCCCCCCCCCEEEEECCCCCEEECCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             99888356578963131630001579989989996787864558899-89886999368774337999999987430389


Q ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCC
Q ss_conf             78579999519988987335668989864457774058843898204544444656775431104788528998873137
Q gi|254780363|r  143 FDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTD  222 (264)
Q Consensus       143 ~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~  222 (264)
T Consensus       298 ~Gk~wLFFGar~t~~lLY~~ele~~~kd----------~~dl~~AfSRe~~~~K~YVQDri~E~-Adev--~~lLqd~ga  364 (411)
T TIGR03224       298 GGKLMLFFGARTKEELPYFGPLQKLPKD----------FIDINFAFSRTPEQPKRYVQDAIRER-AADV--AALLKDPNT  364 (411)
T ss_pred             CCCEEEEECCCCCCCCCCHHHHHHHHHH----------CCCEEEEEECCCCCCCEEHHHHHHHH-HHHH--HHHHHCCCC
T ss_conf             8618999469883115545899986762----------55258998447899954278899998-9999--999738994


Q ss_pred             EEEEECCHHHHHHHHHHH----HHCCCC----CCCCCCCCEEEEEE
Q ss_conf             899968989999999999----986985----31567995099998
Q gi|254780363|r  223 RIMICGSPTMIVDMKDLL----IAKKFR----EGSNSRPGTFVVER  260 (264)
Q Consensus       223 ~vyiCGpp~Mi~~v~~~L----~~~G~~----~~~~~~~g~~~~E~  260 (264)
T Consensus       365 hiYvCGLKGMe~GV~eAl~~iA~~~G~~W~~~~~~Lkk~gRwHVEt  410 (411)
T TIGR03224       365 YIYICGLKGMEEGVLDAFRDVCATNGLSWETLEPRLRAEGRLHLET  410 (411)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             8999660314677999999999973999899999998738504540