HHsearch alignment for GI: 254780363 and conserved domain: cd06188
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=0 Score=350.69 Aligned_cols=236 Identities=17% Similarity=0.256 Sum_probs=188.4
Q ss_pred CCCCCCCCCEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEECC-----------------------------C
Q ss_conf 443665310689888847998699998077--899839971799998439-----------------------------8
Q gi|254780363|r 6 PKLPVNVYCESVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLMVN-----------------------------G 54 (264)
Q Consensus 6 ~~~p~~~~~~~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~~~-----------------------------g 54 (264)
T Consensus 3 ~~~~~~~~~~~v~s~~~lt~di~~~~l~l~~~~~~~f~aGQyv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (283)
T cd06188 3 EVLGAKKWECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHD 82 (283)
T ss_pred CCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 55675167899997436768728999987999815225887799960786544444554234444565415211002467
Q ss_pred EEEEEEEEECCCCCC-CCEEEEEE---------EECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 588766542285768-86058999---------94388856610012388510025788732164322358669999758
Q gi|254780363|r 55 RRISRAYSMASPCWD-DKLEFFSI---------KVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTG 124 (264)
Q Consensus 55 ~~~~R~YSiaS~p~~-~~le~~i~---------~v~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgG 124 (264)
T Consensus 83 ~~~~R~ySiAs~P~~~~~le~~Ir~~~~~~~~~~vp~G~~S~~l~~lk~Gd~v~i~g-P~G~f~l~~--~~~~lvlIAgG 159 (283)
T cd06188 83 EPVSRAYSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASG-PFGEFFIKD--TDREMVFIGGG 159 (283)
T ss_pred CCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCEEEEEC-CCCCCEECC--CCCCEEEEEEC
T ss_conf 764143135789999996999999821885546689851356886499999899964-645617157--88852899835
Q ss_pred CCHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCCCCCC
Q ss_conf 6727789988763410-3578579999519988987335668989864457774058843898204544--444656775
Q gi|254780363|r 125 TGIAPFVSVIRDPGTY-EKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED--YLYKGRITN 201 (264)
Q Consensus 125 tGItP~~sii~~~~~~-~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~--~~~~grit~ 201 (264)
T Consensus 160 tGIaPl~Sml~~~l~~~~~~r~v~l~ygaR~~~dl~~~~el~~l~~~~--------~n~~~~~vlS~~~~~~~w~g~~-G 230 (283)
T cd06188 160 AGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEF--------PNFKYHPVLSEPQPEDNWDGYT-G 230 (283)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHC--------CCEEEEEEECCCCCCCCCCCCC-C
T ss_conf 674469999999998269997289999708889974499999999768--------9979999978778666777861-7
Q ss_pred CCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 43110478852899887313789996898999999999998698531567995099998
Q gi|254780363|r 202 HILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGTFVVER 260 (264)
Q Consensus 202 ~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~~~~E~ 260 (264)
T Consensus 231 ~V~~-~~~~~~~~~~~~~~~~~vYlCGPp~Mv~a~~~~L~~~Gv~~~------~I~~E~ 282 (283)
T cd06188 231 FIHQ-VLLENYLKKHPAPEDIEFYLCGPPPMNSAVIKMLDDLGVPRE------NIAFDD 282 (283)
T ss_pred CCCH-HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH------HEEECC
T ss_conf 6348-999999964899678799994989999999999998599889------957332