HHsearch alignment for GI: 254780363 and conserved domain: cd06189
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=0 Score=343.06 Aligned_cols=222 Identities=18% Similarity=0.272 Sum_probs=187.5
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC-CCC
Q ss_conf 6898888479986999980778998399717999984398588766542285768-86058999943888566100-123
Q gi|254780363|r 15 ESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ-NIQ 92 (264)
Q Consensus 15 ~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~-~l~ 92 (264)
T Consensus 1 ckV~~i~~~t~dv~~l~l~~~~~~~f~pGQ~v~v~~~~~~---~R~ySi~s~p~~~~~l~l~ik~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDGD---KRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred CEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECCCC---EEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHCCC
T ss_conf 9888989848996999996699888789974899959987---8998616589999839999999679815889985499
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88510025788732164322358669999758672778998876341035785799995199889873356689898644
Q gi|254780363|r 93 PGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDE 172 (264)
Q Consensus 93 ~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~ 172 (264)
T Consensus 78 ~Gd~v~v~g-P~G~f~l~~~-~~~~~vlIAgG~GItP~~s~l~~~~~~~~~~~v~l~~g~r~~~~~~~~~el~~l~~~~- 154 (224)
T cd06189 78 ENGLVRIEG-PLGDFFLRED-SDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDELLEAWAEAH- 154 (224)
T ss_pred CCCEEEEEC-CCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHC-
T ss_conf 999899970-6757411567-8985899936877553999999999759999816774269979986899999999768-
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 57774058843898204544444656775431104788528998873137899968989999999999986985315679
Q gi|254780363|r 173 ILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSR 252 (264)
Q Consensus 173 ~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~ 252 (264)
T Consensus 155 -------~~~~~~~~~s~~~~~~~~~~------G~v~~~~~~~~~~~~~~~vyiCGP~~m~~~v~~~L~~~Gv~~~---- 217 (224)
T cd06189 155 -------PNFTYVPVLSEPEEGWQGRT------GLVHEAVLEDFPDLSDFDVYACGSPEMVYAARDDFVEKGLPEE---- 217 (224)
T ss_pred -------CCEEEEEEECCCCCCCCCCC------CCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH----
T ss_conf -------99599999756887756655------8089999965799669999991999999999999998599889----
Q ss_pred CCEEEEEEE
Q ss_conf 950999987
Q gi|254780363|r 253 PGTFVVERA 261 (264)
Q Consensus 253 ~g~~~~E~~ 261 (264)
T Consensus 218 --~I~~E~F 224 (224)
T cd06189 218 --NFFSDAF 224 (224)
T ss_pred --HEEECCC
T ss_conf --9574119