HHsearch alignment for GI: 254780363 and conserved domain: cd06189

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00  E-value=0  Score=343.06  Aligned_cols=222  Identities=18%  Similarity=0.272  Sum_probs=187.5

Q ss_pred             EEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC-CCC
Q ss_conf             6898888479986999980778998399717999984398588766542285768-86058999943888566100-123
Q gi|254780363|r   15 ESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ-NIQ   92 (264)
Q Consensus        15 ~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~-~l~   92 (264)
T Consensus         1 ckV~~i~~~t~dv~~l~l~~~~~~~f~pGQ~v~v~~~~~~---~R~ySi~s~p~~~~~l~l~ik~~~~G~~s~~l~~~l~   77 (224)
T cd06189           1 CKVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDGD---KRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELK   77 (224)
T ss_pred             CEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECCCC---EEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHCCC
T ss_conf             9888989848996999996699888789974899959987---8998616589999839999999679815889985499


Q ss_pred             CCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf             88510025788732164322358669999758672778998876341035785799995199889873356689898644
Q gi|254780363|r   93 PGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDE  172 (264)
Q Consensus        93 ~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~  172 (264)
T Consensus        78 ~Gd~v~v~g-P~G~f~l~~~-~~~~~vlIAgG~GItP~~s~l~~~~~~~~~~~v~l~~g~r~~~~~~~~~el~~l~~~~-  154 (224)
T cd06189          78 ENGLVRIEG-PLGDFFLRED-SDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDELLEAWAEAH-  154 (224)
T ss_pred             CCCEEEEEC-CCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHC-
T ss_conf             999899970-6757411567-8985899936877553999999999759999816774269979986899999999768-


Q ss_pred             HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             57774058843898204544444656775431104788528998873137899968989999999999986985315679
Q gi|254780363|r  173 ILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSR  252 (264)
Q Consensus       173 ~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~  252 (264)
T Consensus       155 -------~~~~~~~~~s~~~~~~~~~~------G~v~~~~~~~~~~~~~~~vyiCGP~~m~~~v~~~L~~~Gv~~~----  217 (224)
T cd06189         155 -------PNFTYVPVLSEPEEGWQGRT------GLVHEAVLEDFPDLSDFDVYACGSPEMVYAARDDFVEKGLPEE----  217 (224)
T ss_pred             -------CCEEEEEEECCCCCCCCCCC------CCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH----
T ss_conf             -------99599999756887756655------8089999965799669999991999999999999998599889----


Q ss_pred             CCEEEEEEE
Q ss_conf             950999987
Q gi|254780363|r  253 PGTFVVERA  261 (264)
Q Consensus       253 ~g~~~~E~~  261 (264)
T Consensus       218 --~I~~E~F  224 (224)
T cd06189         218 --NFFSDAF  224 (224)
T ss_pred             --HEEECCC
T ss_conf             --9574119