HHsearch alignment for GI: 254780363 and conserved domain: cd06196
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.5e-44 Score=317.63 Aligned_cols=213 Identities=23% Similarity=0.392 Sum_probs=173.6
Q ss_pred CEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCC-EEEEEEEEECCCCCCCCEEEEEEEECC-CCCCCCCCCC
Q ss_conf 06898888479986999980778998399717999984398-588766542285768860589999438-8856610012
Q gi|254780363|r 14 CESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNG-RRISRAYSMASPCWDDKLEFFSIKVEQ-GPLTTHLQNI 91 (264)
Q Consensus 14 ~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g-~~~~R~YSiaS~p~~~~le~~i~~v~~-G~~S~~L~~l 91 (264)
T Consensus 2 ~l~v~~i~~~t~dv~~~~l~~p~~~~f~pGQ~v~l~l~~~g~~~~~R~ySi~s~p~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred EEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHC
T ss_conf 01999999819891999998698789699966999983499845667873025899980899999878998365899747
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 38851002578873216432235866999975867277899887634103578579999519988987335668989864
Q gi|254780363|r 92 QPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171 (264)
Q Consensus 92 ~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~ 171 (264)
T Consensus 82 ~~Gd~v~v~g-P~G~f~~~-----~~~lliagG~GItP~~sml~~l~~~~~~~~~~l~~~~r~~~d~~~~~el~~~---- 151 (218)
T cd06196 82 QPGDTLLIED-PWGAIEYK-----GPGVFIAGGAGITPFIAILRDLAAKGKLEGNTLIFANKTEKDIILKDELEKM---- 151 (218)
T ss_pred CCCCCEEEEC-CCCCCCCC-----CCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH----
T ss_conf 7999038938-71676327-----8609996575602699999999972998998999968988898899999750----
Q ss_pred HHHHHHHCCCCEEEEECCCCCCC--CCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 45777405884389820454444--4656775431104788528998873137899968989999999999986985315
Q gi|254780363|r 172 EILKDLIGQKLKFYRTVTQEDYL--YKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGS 249 (264)
Q Consensus 172 ~~~~~~~~~~~~~~~~~s~e~~~--~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~ 249 (264)
T Consensus 152 ------~--~~~~~~~~s~~~~~~~~~grv~~~~----l~~-----~~~~~~~~vy~CGp~~m~~~~~~~L~~~Gv~~~- 213 (218)
T cd06196 152 ------L--GLKFINVVTDEKDPGYAHGRIDKAF----LKQ-----HVTDFNQHFYVCGPPPMEEAINGALKELGVPED- 213 (218)
T ss_pred ------H--CCCEEEEECCCCCCCCCCCCCCHHH----HHH-----CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH-
T ss_conf ------0--6878999966898775058317999----961-----289999989994999999999999998699889-
Q ss_pred CCCCCEEEEE
Q ss_conf 6799509999
Q gi|254780363|r 250 NSRPGTFVVE 259 (264)
Q Consensus 250 ~~~~g~~~~E 259 (264)
T Consensus 214 -----~I~~E 218 (218)
T cd06196 214 -----SIVFE 218 (218)
T ss_pred -----HEEEC
T ss_conf -----98839