Query gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 264
No_of_seqs 128 out of 2557
Neff 7.8
Searched_HMMs 39220
Date Sun May 29 16:41:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780363.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10926 ferredoxin-NADP reduc 100.0 0 0 438.9 26.5 244 10-262 2-248 (248)
2 cd06195 FNR1 Ferredoxin-NADP+ 100.0 0 0 406.3 25.8 238 16-261 1-241 (241)
3 cd06214 PA_degradation_oxidore 100.0 0 0 357.1 25.4 235 13-263 2-241 (241)
4 PRK11872 antC anthranilate dio 100.0 0 0 357.7 23.4 227 11-263 105-336 (340)
5 PRK07609 CDP-6-deoxy-delta-3,4 100.0 0 0 350.4 24.3 231 7-263 97-332 (337)
6 cd06188 NADH_quinone_reductase 100.0 0 0 350.7 21.9 236 6-260 3-282 (283)
7 PRK08051 fre FMN reductase; Va 100.0 0 0 348.9 22.8 227 12-264 2-231 (232)
8 cd06184 flavohem_like_fad_nad_ 100.0 0 0 344.8 23.7 233 11-261 5-243 (247)
9 cd06189 flavin_oxioreductase N 100.0 0 0 343.1 22.7 222 15-261 1-224 (224)
10 cd06212 monooxygenase_like The 100.0 0 0 339.5 23.4 226 13-263 1-232 (232)
11 cd06209 BenDO_FAD_NAD Benzoate 100.0 0 0 337.6 23.0 225 12-263 1-228 (228)
12 cd06187 O2ase_reductase_like T 100.0 0 0 337.6 22.3 221 17-260 1-223 (224)
13 cd06191 FNR_iron_sulfur_bindin 100.0 0 0 334.5 23.8 226 15-261 1-231 (231)
14 cd06215 FNR_iron_sulfur_bindin 100.0 0 0 333.8 24.0 223 15-261 1-231 (231)
15 cd06216 FNR_iron_sulfur_bindin 100.0 0 0 331.3 24.9 230 4-260 9-242 (243)
16 cd06213 oxygenase_e_transfer_s 100.0 0 0 332.2 22.4 222 14-261 2-227 (227)
17 cd06210 MMO_FAD_NAD_binding Me 100.0 0 0 329.6 23.4 226 13-262 2-235 (236)
18 cd06211 phenol_2-monooxygenase 100.0 0 0 329.9 23.1 232 7-261 1-238 (238)
19 PRK10684 HCP oxidoreductase, N 100.0 0 0 330.7 22.4 230 8-262 4-239 (335)
20 cd06217 FNR_iron_sulfur_bindin 100.0 0 0 327.3 24.3 228 13-261 2-235 (235)
21 PRK13289 nitric oxide dioxygen 100.0 0 0 327.7 22.2 224 12-260 154-391 (399)
22 cd06194 FNR_N-term_Iron_sulfur 100.0 0 0 327.2 22.6 219 17-261 1-221 (222)
23 cd06183 cyt_b5_reduct_like Cyt 100.0 1.8E-44 0 317.1 24.7 223 15-248 1-229 (234)
24 cd06190 T4MO_e_transfer_like T 100.0 8.4E-45 0 319.4 22.0 223 17-263 1-232 (232)
25 cd06196 FNR_like_1 Ferredoxin 100.0 1.5E-44 0 317.6 22.6 213 14-259 2-218 (218)
26 PRK05713 hypothetical protein; 100.0 7E-45 0 319.8 20.5 218 12-263 91-309 (312)
27 PRK05464 Na(+)-translocating N 100.0 5.6E-45 0 320.7 19.2 238 4-260 119-405 (408)
28 cd00322 FNR_like Ferredoxin re 100.0 1.4E-43 0 311.1 23.3 217 18-248 1-218 (223)
29 COG1018 Hmp Flavodoxin reducta 100.0 2.2E-43 0 309.8 24.0 224 9-260 2-229 (266)
30 TIGR02160 PA_CoA_Oxy5 phenylac 100.0 3.4E-44 0 315.3 14.8 231 13-262 2-255 (371)
31 cd06198 FNR_like_3 NAD(P) bind 100.0 1.6E-42 0 304.1 22.0 209 21-260 3-214 (216)
32 cd06221 sulfite_reductase_like 100.0 1.9E-41 0 296.9 22.5 209 17-247 1-216 (253)
33 cd06185 PDR_like Phthalate dio 100.0 1.4E-41 0 297.7 19.4 205 18-263 1-211 (211)
34 PTZ00319 NADH-cytochrome B5 re 100.0 1E-36 2.6E-41 265.3 21.2 231 7-248 30-298 (303)
35 KOG0534 consensus 100.0 5.1E-36 1.3E-40 260.6 21.3 226 11-248 50-281 (286)
36 PRK08345 cytochrome-c3 hydroge 100.0 1.1E-35 2.8E-40 258.4 21.1 227 6-247 2-241 (292)
37 cd06208 CYPOR_like_FNR These f 100.0 8.1E-36 2.1E-40 259.3 18.1 240 8-259 4-284 (286)
38 PRK08221 anaerobic sulfite red 100.0 6.6E-35 1.7E-39 253.2 20.7 215 7-247 2-218 (263)
39 TIGR01941 nqrF NADH:ubiquinone 100.0 1.6E-35 4E-40 257.3 16.2 234 3-248 115-416 (425)
40 PTZ00274 cytochrome b5 reducta 100.0 1.4E-34 3.5E-39 251.0 17.8 217 10-238 50-280 (325)
41 COG0543 UbiB 2-polyprenylpheno 100.0 6.5E-33 1.7E-37 239.9 20.2 208 14-247 9-218 (252)
42 cd06220 DHOD_e_trans_like2 FAD 100.0 2.5E-32 6.4E-37 235.9 19.6 191 15-246 1-192 (233)
43 cd06218 DHOD_e_trans FAD/NAD b 100.0 1.6E-31 4.1E-36 230.5 18.9 201 17-246 1-205 (246)
44 PRK00054 dihydroorotate dehydr 100.0 8.2E-31 2.1E-35 225.8 19.9 200 11-245 3-203 (248)
45 cd06201 SiR_like2 Cytochrome p 100.0 1.1E-31 2.7E-36 231.7 12.8 225 11-257 44-285 (289)
46 cd06200 SiR_like1 Cytochrome p 100.0 3E-30 7.5E-35 222.1 14.7 223 16-259 2-243 (245)
47 COG2871 NqrF Na+-transporting 100.0 1.6E-30 4.1E-35 223.8 13.2 233 3-248 120-401 (410)
48 TIGR03224 benzo_boxA benzoyl-C 100.0 5.2E-30 1.3E-34 220.4 14.7 238 9-260 139-410 (411)
49 cd06192 DHOD_e_trans_like FAD/ 100.0 8.8E-29 2.3E-33 212.2 20.2 199 17-245 1-202 (243)
50 cd06197 FNR_like_2 FAD/NAD(P) 100.0 1.7E-28 4.4E-33 210.3 15.7 187 19-262 2-219 (220)
51 COG4097 Predicted ferric reduc 100.0 8E-29 2E-33 212.5 13.7 212 10-247 213-427 (438)
52 PRK06222 ferredoxin-NADP(+) re 100.0 9.2E-28 2.3E-32 205.4 18.8 208 15-260 2-213 (281)
53 cd06182 CYPOR_like NADPH cytoc 100.0 5.8E-28 1.5E-32 206.8 17.4 203 26-243 16-237 (267)
54 cd06219 DHOD_e_trans_like1 FAD 100.0 1.3E-27 3.4E-32 204.4 18.8 200 16-246 2-205 (248)
55 cd06186 NOX_Duox_like_FAD_NADP 100.0 2.1E-26 5.4E-31 196.3 20.2 186 25-260 10-209 (210)
56 TIGR02911 sulfite_red_B sulfit 100.0 7.3E-27 1.9E-31 199.4 16.2 208 11-247 4-216 (261)
57 PRK10953 cysJ sulfite reductas 99.9 1.8E-24 4.6E-29 183.5 14.9 169 58-243 385-569 (599)
58 cd06206 bifunctional_CYPOR The 99.9 7.6E-25 1.9E-29 185.9 10.1 173 57-243 160-350 (384)
59 cd06202 Nitric_oxide_synthase 99.9 4.4E-24 1.1E-28 180.8 11.6 175 57-244 176-373 (406)
60 cd06199 SiR Cytochrome p450- l 99.9 1.5E-23 3.9E-28 177.2 11.3 173 57-243 145-330 (360)
61 cd06203 methionine_synthase_re 99.9 2.7E-23 6.8E-28 175.6 11.4 176 56-243 172-368 (398)
62 COG0369 CysJ Sulfite reductase 99.9 3.6E-23 9.1E-28 174.8 11.8 171 58-244 373-558 (587)
63 cd06207 CyPoR_like NADPH cytoc 99.9 2.4E-23 6.2E-28 175.9 10.8 173 57-243 163-352 (382)
64 PRK12778 putative bifunctional 99.9 2.9E-21 7.4E-26 162.0 15.7 200 16-247 3-206 (760)
65 KOG1158 consensus 99.9 1.4E-22 3.7E-27 170.7 8.5 174 57-243 421-615 (645)
66 cd06204 CYPOR NADPH cytochrome 99.9 1.8E-21 4.5E-26 163.4 12.3 172 57-243 177-386 (416)
67 KOG3378 consensus 99.9 7.9E-22 2E-26 165.8 8.4 214 12-248 149-373 (385)
68 PRK06214 sulfite reductase; Pr 99.9 2.7E-21 7E-26 162.2 11.1 221 7-243 170-507 (537)
69 TIGR01931 cysJ sulfite reducta 99.9 3.2E-22 8.1E-27 168.4 5.8 193 37-247 397-602 (628)
70 KOG0039 consensus 99.8 2E-18 5.2E-23 143.0 19.2 232 14-260 356-645 (646)
71 PTZ00306 NADH-dependent fumara 99.8 3.2E-18 8E-23 141.7 19.2 207 30-251 935-1159(1167)
72 pfam00970 FAD_binding_6 Oxidor 99.8 3.3E-19 8.5E-24 148.2 10.8 94 14-108 1-98 (99)
73 pfam00175 NAD_binding_1 Oxidor 99.8 1.3E-19 3.2E-24 151.0 8.5 103 120-238 1-106 (106)
74 PRK12779 putative bifunctional 99.8 5.7E-18 1.5E-22 140.0 13.4 221 13-247 649-873 (944)
75 KOG1159 consensus 99.8 2.7E-19 6.9E-24 148.8 5.7 166 58-243 368-545 (574)
76 PRK12775 putative trifunctiona 99.7 1.1E-16 2.7E-21 131.5 13.5 200 16-246 3-206 (993)
77 cd06193 siderophore_interactin 99.4 1.2E-10 2.9E-15 91.1 16.1 201 17-248 1-226 (235)
78 COG2375 ViuB Siderophore-inter 99.2 1.1E-08 2.9E-13 77.8 18.7 215 8-254 13-255 (265)
79 PRK06567 putative bifunctional 99.1 1.2E-08 3E-13 77.7 16.5 121 12-137 810-935 (1048)
80 pfam08030 NAD_binding_6 Ferric 99.1 1.7E-09 4.2E-14 83.4 11.3 49 116-164 2-54 (148)
81 PRK05802 hypothetical protein; 99.0 2E-08 5E-13 76.2 14.2 212 7-244 60-278 (328)
82 pfam08022 FAD_binding_8 FAD-bi 98.8 2.5E-08 6.3E-13 75.6 8.0 84 20-106 9-101 (103)
83 pfam08021 FAD_binding_9 Sidero 98.5 8.4E-07 2.1E-11 65.3 7.5 91 16-107 1-116 (116)
84 pfam00667 FAD_binding_1 FAD bi 90.3 1.1 2.9E-05 24.4 6.1 48 6-54 1-54 (217)
85 TIGR01408 Ube1 ubiquitin-activ 83.5 3.6 9.1E-05 21.0 5.9 89 2-99 169-280 (1033)
86 cd01519 RHOD_HSP67B2 Member of 82.9 3.2 8.1E-05 21.4 5.1 48 207-255 53-100 (106)
87 PRK12446 N-acetylglucosaminyl 82.6 2.4 6E-05 22.2 4.3 18 115-132 184-201 (352)
88 PRK00726 murG N-acetylglucosam 80.0 3.4 8.8E-05 21.1 4.4 40 116-155 182-223 (359)
89 TIGR01133 murG undecaprenyldip 77.8 3.4 8.5E-05 21.2 3.8 24 116-139 6-30 (368)
90 cd01533 4RHOD_Repeat_2 Member 71.8 7.7 0.0002 18.8 4.8 59 189-247 32-93 (109)
91 pfam08877 MepB MepB protein. M 71.7 7.7 0.0002 18.8 4.6 58 13-81 7-64 (123)
92 cd03785 GT1_MurG MurG is an N- 71.3 6.4 0.00016 19.3 3.9 40 114-154 179-220 (350)
93 PRK02290 3-dehydroquinate synt 70.7 8.1 0.00021 18.6 7.4 111 7-123 165-287 (347)
94 PRK10287 thiosulfate:cyanide s 70.1 5.4 0.00014 19.8 3.3 54 196-249 34-89 (104)
95 PRK05753 nucleoside diphosphat 69.3 8.7 0.00022 18.4 4.2 78 12-106 39-116 (135)
96 cd01449 TST_Repeat_2 Thiosulfa 67.9 9.3 0.00024 18.3 5.8 49 206-255 64-112 (118)
97 COG2130 Putative NADP-dependen 64.9 11 0.00027 17.9 4.8 77 35-124 86-184 (340)
98 COG1018 Hmp Flavodoxin reducta 60.3 0.65 1.7E-05 26.0 -2.9 46 217-262 218-266 (266)
99 TIGR02667 moaB_proteo molybden 59.1 3.9 1E-04 20.8 0.9 13 117-129 65-77 (163)
100 KOG4576 consensus 58.8 9.4 0.00024 18.2 2.8 46 90-136 90-138 (167)
101 cd01526 RHOD_ThiF Member of th 54.8 16 0.0004 16.7 4.2 39 217-255 69-107 (122)
102 cd01444 GlpE_ST GlpE sulfurtra 54.2 16 0.00041 16.7 4.2 31 217-247 53-83 (96)
103 COG0169 AroE Shikimate 5-dehyd 53.7 16 0.00042 16.6 4.6 36 115-157 126-162 (283)
104 pfam04954 SIP Siderophore-inte 53.7 16 0.00042 16.6 9.1 105 116-248 2-107 (118)
105 COG1691 NCAIR mutase (PurE)-re 49.7 9.3 0.00024 18.2 1.5 15 122-136 209-223 (254)
106 pfam03033 Glyco_transf_28 Glyc 49.6 13 0.00032 17.4 2.2 25 118-142 1-27 (136)
107 TIGR01687 moaD_arch MoaD famil 49.6 16 0.0004 16.7 2.7 30 75-105 58-92 (93)
108 cd01524 RHOD_Pyr_redox Member 49.2 19 0.00049 16.2 3.7 31 216-246 47-77 (90)
109 COG0521 MoaB Molybdopterin bio 48.4 7.1 0.00018 19.0 0.8 18 116-133 68-85 (169)
110 cd01521 RHOD_PspE2 Member of t 48.4 20 0.0005 16.1 3.1 62 184-246 26-92 (110)
111 TIGR00999 8a0102 Membrane Fusi 48.1 20 0.00051 16.0 8.0 91 7-101 166-279 (284)
112 TIGR02026 BchE magnesium-proto 47.3 8.6 0.00022 18.5 1.1 64 91-154 34-104 (506)
113 pfam10396 TrmE_N GTP-binding p 46.7 21 0.00053 15.9 3.3 33 223-258 75-107 (114)
114 COG0707 MurG UDP-N-acetylgluco 44.2 23 0.00058 15.7 4.2 39 116-155 183-222 (357)
115 cd06369 PBP1_GC_C_enterotoxin_ 44.1 23 0.00058 15.6 3.5 15 223-237 211-225 (380)
116 PRK09417 mogA molybdenum cofac 42.6 9.6 0.00024 18.2 0.7 15 116-130 67-81 (192)
117 pfam01408 GFO_IDH_MocA Oxidore 41.6 25 0.00063 15.4 4.3 33 222-263 64-96 (120)
118 PRK11750 gltB glutamate syntha 40.2 18 0.00045 16.4 1.7 52 82-134 949-1041(1483)
119 TIGR00670 asp_carb_tr aspartat 39.3 27 0.00069 15.2 2.8 28 221-248 201-230 (336)
120 cd03688 eIF2_gamma_II eIF2_gam 38.3 25 0.00063 15.4 2.3 39 57-101 10-50 (113)
121 cd01529 4RHOD_Repeats Member o 37.7 28 0.00073 15.0 3.5 30 218-247 54-83 (96)
122 COG1465 Predicted alternative 37.5 29 0.00073 15.0 6.7 24 77-101 268-291 (376)
123 TIGR00873 gnd 6-phosphoglucona 37.0 26 0.00066 15.3 2.2 69 52-125 43-126 (480)
124 PRK00260 cysS cysteinyl-tRNA s 36.8 15 0.00038 16.9 0.9 11 236-246 437-447 (460)
125 PRK03604 moaC bifunctional mol 36.7 15 0.00039 16.8 1.0 15 116-130 206-220 (301)
126 TIGR01421 gluta_reduc_1 glutat 36.5 24 0.00062 15.5 2.0 51 82-137 151-203 (475)
127 PTZ00327 eukaryotic translatio 36.4 25 0.00063 15.4 2.0 10 118-127 148-157 (460)
128 KOG0072 consensus 36.3 30 0.00076 14.9 4.1 46 84-132 31-80 (182)
129 KOG2596 consensus 36.1 30 0.00077 14.8 5.8 70 39-108 81-151 (479)
130 pfam01959 DHQS 3-dehydroquinat 36.1 30 0.00077 14.8 7.4 108 9-124 163-284 (343)
131 TIGR01826 CofD_related conserv 36.0 24 0.00061 15.5 1.9 16 118-133 193-208 (331)
132 cd00886 MogA_MoaB MogA_MoaB fa 35.5 14 0.00037 17.0 0.7 14 116-129 62-75 (152)
133 COG0391 Uncharacterized conser 34.5 32 0.00081 14.7 2.9 19 116-134 190-208 (323)
134 PRK05305 phosphatidylserine de 33.3 33 0.00085 14.5 2.7 25 82-107 152-177 (214)
135 PRK10846 bifunctional folylpol 33.2 33 0.00085 14.5 5.7 110 117-241 297-415 (416)
136 TIGR01340 aconitase_mito aconi 33.0 17 0.00042 16.6 0.7 27 20-46 485-521 (761)
137 cd01518 RHOD_YceA Member of th 33.0 34 0.00086 14.5 4.8 30 218-247 59-88 (101)
138 COG4326 Spo0M Sporulation cont 32.8 34 0.00086 14.5 3.0 17 39-55 43-59 (270)
139 TIGR03447 mycothiol_MshC cyste 32.8 26 0.00066 15.3 1.7 13 127-139 132-144 (411)
140 cd01534 4RHOD_Repeat_3 Member 32.4 35 0.00088 14.4 3.5 59 196-256 30-90 (95)
141 cd00158 RHOD Rhodanese Homolog 32.0 35 0.00089 14.4 4.1 32 216-247 46-77 (89)
142 cd07044 CofD_YvcK Family of Co 31.9 31 0.0008 14.7 1.9 19 116-134 175-193 (309)
143 PRK06531 yajC preprotein trans 31.7 35 0.00088 14.4 2.1 49 86-136 32-81 (120)
144 cd01535 4RHOD_Repeat_4 Member 31.6 36 0.00091 14.4 3.2 35 113-151 47-82 (145)
145 PRK01029 tolB translocation pr 30.9 36 0.00093 14.3 6.0 71 61-131 184-254 (425)
146 cd01532 4RHOD_Repeat_1 Member 30.9 36 0.00093 14.3 5.2 29 220-248 50-80 (92)
147 KOG3141 consensus 30.5 27 0.00069 15.1 1.4 12 90-101 162-173 (310)
148 KOG1530 consensus 30.5 37 0.00094 14.2 6.2 51 205-256 74-124 (136)
149 cd03083 TRX_Fd_NuoE_hoxF TRX-l 30.4 37 0.00095 14.2 3.1 19 242-260 27-45 (80)
150 TIGR01137 cysta_beta cystathio 30.0 38 0.00096 14.2 5.2 25 224-248 376-400 (527)
151 cd01522 RHOD_1 Member of the R 29.9 38 0.00096 14.2 5.0 32 217-248 61-92 (117)
152 pfam08749 DUF1790 Family of un 29.8 38 0.00097 14.2 3.7 105 47-158 21-139 (145)
153 pfam01272 GreA_GreB Transcript 28.2 40 0.001 14.0 2.1 60 43-107 9-68 (77)
154 TIGR00382 clpX ATP-dependent C 27.6 41 0.0011 13.9 2.8 47 84-131 247-298 (452)
155 TIGR01995 PTS-II-ABC-beta PTS 27.6 41 0.0011 13.9 6.0 98 8-114 511-619 (660)
156 COG1049 AcnB Aconitase B [Ener 26.7 17 0.00043 16.5 -0.2 51 80-130 466-517 (852)
157 PRK10310 galactitol-specific P 25.6 41 0.001 14.0 1.6 14 118-131 4-17 (94)
158 pfam10061 DUF2299 Uncharacteri 25.4 37 0.00095 14.2 1.4 38 97-135 24-64 (137)
159 cd01528 RHOD_2 Member of the R 24.9 46 0.0012 13.6 5.0 31 217-247 55-85 (101)
160 PRK05291 trmE tRNA modificatio 24.9 46 0.0012 13.6 3.1 11 222-232 217-227 (445)
161 TIGR02477 PFKA_PPi diphosphate 24.7 47 0.0012 13.6 1.8 43 87-130 70-122 (566)
162 PRK09238 bifunctional aconitat 24.5 17 0.00044 16.4 -0.4 51 80-130 464-515 (841)
163 pfam01933 UPF0052 Uncharacteri 24.1 48 0.0012 13.5 2.0 19 116-134 173-191 (291)
164 PRK03612 spermidine synthase; 24.1 48 0.0012 13.5 3.2 22 115-137 294-315 (516)
165 pfam00551 Formyl_trans_N Formy 23.6 49 0.0012 13.4 4.9 37 118-155 3-39 (181)
166 cd01447 Polysulfide_ST Polysul 23.5 49 0.0013 13.4 4.4 32 217-248 58-89 (103)
167 cd07187 YvcK_like family of mo 23.4 49 0.0013 13.4 1.9 42 116-157 176-222 (308)
168 TIGR01852 lipid_A_lpxA acyl-[a 23.1 26 0.00066 15.3 0.2 39 24-65 52-93 (257)
169 PRK01581 speE spermidine synth 23.1 50 0.0013 13.4 3.4 30 115-149 140-169 (363)
170 COG0782 Uncharacterized conser 23.0 50 0.0013 13.4 3.6 64 40-108 79-142 (151)
171 cd01527 RHOD_YgaP Member of th 21.8 53 0.0013 13.2 5.6 32 217-248 51-82 (99)
172 TIGR02124 hypE hydrogenase exp 21.6 41 0.001 14.0 1.0 131 89-248 164-305 (345)
173 PRK04000 translation initiatio 21.5 54 0.0014 13.2 2.3 10 59-68 84-93 (410)
174 TIGR00065 ftsZ cell division p 21.2 54 0.0014 13.1 1.6 23 114-136 105-134 (365)
175 pfam01079 Hint Hint module. Th 21.0 55 0.0014 13.1 2.9 19 89-107 104-122 (214)
176 PRK09330 cell division protein 20.8 55 0.0014 13.1 2.3 23 114-136 95-124 (387)
177 PRK00226 greA transcription el 20.7 56 0.0014 13.1 3.5 63 40-107 86-148 (157)
178 COG0285 FolC Folylpolyglutamat 20.3 57 0.0014 13.0 4.5 117 116-243 300-424 (427)
No 1
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=100.00 E-value=0 Score=438.89 Aligned_cols=244 Identities=28% Similarity=0.564 Sum_probs=224.4
Q ss_pred CCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 65310689888847998699998077899839971799998439858876654228576886058999943888566100
Q gi|254780363|r 10 VNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQ 89 (264)
Q Consensus 10 ~~~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~ 89 (264)
.++..++|+++++||+++|+|++..|.. +|+||||++|+++++|+.++|+|||||+|+++.|||++++|++|.+|++|+
T Consensus 2 ~~~~~~~V~~v~~~T~~~~sl~~~~p~~-~F~~GQy~~l~~~i~g~~v~R~YSi~s~P~~~~lef~i~~v~~G~~S~~L~ 80 (248)
T PRK10926 2 ADWVTGKVTKVQNWTDALFSLTVHAPVD-PFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPNLEFYLVTVPEGKLSPRLA 80 (248)
T ss_pred CCCEEEEEEEEEECCCCEEEEEEECCCC-CCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCHHHHH
T ss_conf 9876408999864489749999968988-858997079866439906640011114899995699999907985368896
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 12388510025788732164322358669999758672778998876341035785799995199889873356689898
Q gi|254780363|r 90 NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEIS 169 (264)
Q Consensus 90 ~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~ 169 (264)
++++||+|.+.+||+|+|++++.+++++++||||||||||++|||++...+++.++|+|+||+|+.+|++|.+++..
T Consensus 81 ~l~~Gd~v~~~~~~~G~f~l~~~~~~~~l~liAtGTGiaP~~Sml~~~~~~~~~~~i~L~~g~R~~~dl~y~del~~--- 157 (248)
T PRK10926 81 ALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQLGKDLERFKNLVLVHAARYAADLSYLPLMQE--- 157 (248)
T ss_pred HCCCCCEEEECCCCCCEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH---
T ss_conf 16789879863799832766678887617999604578999999872786577787899995798788232899999---
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCC--CCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHC-CCC
Q ss_conf 644577740588438982045444--44656775431104788528998873137899968989999999999986-985
Q gi|254780363|r 170 QDEILKDLIGQKLKFYRTVTQEDY--LYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAK-KFR 246 (264)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~s~e~~--~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~-G~~ 246 (264)
+++.+..+|+|++++|||+. .++|||++.+.+|.+++.+++ .++++++++|+||||+||+++++.|++. |++
T Consensus 158 ----L~~~~~~~~~~~~vlSrE~~~~~l~GRI~~~i~~g~le~~~~~-~~~~~~~~v~lCGnp~Mi~~~~~~L~e~~g~~ 232 (248)
T PRK10926 158 ----LEQRYEGKLRIQTVVSRETAAGSLTGRVPALIENGELESAVGL-PMDKETSHVMLCGNPQMVRDTQQLLKETRQMT 232 (248)
T ss_pred ----HHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHCCC-CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf ----9976537705888414678864346460134337706886299-99856788999699999999999998757976
Q ss_pred CCCCCCCCEEEEEEEE
Q ss_conf 3156799509999876
Q gi|254780363|r 247 EGSNSRPGTFVVERAF 262 (264)
Q Consensus 247 ~~~~~~~g~~~~E~~~ 262 (264)
+|.+|+||+|++||-|
T Consensus 233 ~~~~r~pg~~~~E~yw 248 (248)
T PRK10926 233 KHLRRRPGHMTAEHYW 248 (248)
T ss_pred CCCCCCCCCEEEEECC
T ss_conf 7887999868975069
No 2
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=100.00 E-value=0 Score=406.33 Aligned_cols=238 Identities=42% Similarity=0.748 Sum_probs=213.8
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECC-CEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 89888847998699998077899839971799998439-85887665422857688605899994388856610012388
Q gi|254780363|r 16 SVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVN-GRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPG 94 (264)
Q Consensus 16 ~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~-g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~l~~G 94 (264)
||++++++|+++++|+|.++++|+|+||||+.|.++.+ |+.++|+|||||+|+++++||+|+++++|.+|+||+++++|
T Consensus 1 tvv~~~~~t~dv~~l~l~~~~~~~f~pGQyv~l~~~~~~~~~~~R~YSiss~p~~~~l~~~ik~v~~G~~S~~L~~l~~G 80 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYEENLEFYIILVPDGPLTPRLFKLKPG 80 (241)
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEECCCCCHHHHHHCCCC
T ss_conf 96889975798799998289998879898189999638992787434455389998299999996399531658747999
Q ss_pred CEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 51002578873216432235866999975867277899887634103578579999519988987335668989864457
Q gi|254780363|r 95 DTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEIL 174 (264)
Q Consensus 95 d~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~ 174 (264)
|+|.++.+|+|.|++++..++++++|||||||||||+||++++...++..+++|+||+|+.+|++|.+++..+.+..
T Consensus 81 d~v~v~~gP~G~f~l~~~~~~~~ivlIAgGtGItP~~sml~~l~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~--- 157 (241)
T cd06195 81 DTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWERFDKIVLVHGVRYAEELAYQDEIEALAKQY--- 157 (241)
T ss_pred CEEEECCCCCCCEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC---
T ss_conf 99964269975145155678867899991512455999999999709998479999758978868999999999777---
Q ss_pred HHHHCCCCEEEEECCCCCCC--CCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 77405884389820454444--4656775431104788528998873137899968989999999999986985315679
Q gi|254780363|r 175 KDLIGQKLKFYRTVTQEDYL--YKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSR 252 (264)
Q Consensus 175 ~~~~~~~~~~~~~~s~e~~~--~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~ 252 (264)
..||+|++++|+|+.. +.||+++.+..+.+.+.++. ..+++++++|+||||+||+++++.|.++|+.+++.|+
T Consensus 158 ----~~~~~~~~~~s~~~~~~~~~g~v~~~~~~~~l~~~~~~-~~~~~~~~~ylCGPp~M~~~~~~~L~~~Gv~~~~~~~ 232 (241)
T cd06195 158 ----NGKFRYVPIVSREKENGALTGRIPDLIESGELEEHAGL-PLDPETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRK 232 (241)
T ss_pred ----CCCEEEEEEECCCCCCCCCCCCCCHHHHHCHHHHHHCC-CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf ----99769999975788877861400415550469997378-8897896899929999999999999983999777789
Q ss_pred CCEEEEEEE
Q ss_conf 950999987
Q gi|254780363|r 253 PGTFVVERA 261 (264)
Q Consensus 253 ~g~~~~E~~ 261 (264)
|++|++||+
T Consensus 233 ~~~i~~e~~ 241 (241)
T cd06195 233 PGNITVEKY 241 (241)
T ss_pred CCCEEEECC
T ss_conf 974898549
No 3
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=100.00 E-value=0 Score=357.15 Aligned_cols=235 Identities=19% Similarity=0.306 Sum_probs=194.6
Q ss_pred CCEEEEEEEECCCCEEEEEEECCC----CCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 106898888479986999980778----9983997179999843985887665422857688605899994388856610
Q gi|254780363|r 13 YCESVISIKHYTDRLFRFCITRPK----SFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHL 88 (264)
Q Consensus 13 ~~~~V~~v~~~t~~~~~~~l~~~~----~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L 88 (264)
...||++++++|+++++|+|+.|+ .++|+||||+.|.++.+|+.++|+|||||+|++++++|.++++++|.+|+||
T Consensus 2 ~p~~V~~i~~et~dv~~~~l~~p~~~~~~~~f~pGQ~v~l~~~~~g~~~~R~ySias~p~~~~~~i~Vk~~~~G~~S~~l 81 (241)
T cd06214 2 HPLTVAEVVRETADAVSITFDVPEELRDAFRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDDELRITVKRVPGGRFSNWA 81 (241)
T ss_pred EEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCEEEEEEEEECCCCCCHHH
T ss_conf 20299999997999199999838876668897999689999732996874333404679999799999998799704788
Q ss_pred C-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 0-123885100257887321643223586699997586727789988763410357857999951998898733566898
Q gi|254780363|r 89 Q-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHE 167 (264)
Q Consensus 89 ~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~ 167 (264)
+ ++++||+|.+++ |.|.|+++.....++++|||||||||||+||++++...+...+++|+||+|+.+|++|.+++..+
T Consensus 82 ~~~l~~Gd~v~v~g-P~G~f~~~~~~~~~~lvliAgG~GitP~~sml~~~l~~~~~~~v~l~~g~r~~~d~~~~~el~~l 160 (241)
T cd06214 82 NDELKAGDTLEVMP-PAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREPASRVTLVYGNRTEASVIFREELADL 160 (241)
T ss_pred HHCCCCCCEEEEEC-CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 84189999999765-75772406777886199995687518499999999974999838999807997997889999999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 98644577740588438982045444446567754311047885289988731378999689899999999999869853
Q gi|254780363|r 168 ISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264)
... +..+|++++++|+++..|.++. +.+..+.+.+.+.....+++++.+|+||||+||+++.+.|.++|+.+
T Consensus 161 ~~~-------~~~~~~~~~~~s~~~~~~~~~~-Gri~~~~v~~~~~~~~~~~~~~~vyiCGP~~m~~~~~~~L~~~Gv~~ 232 (241)
T cd06214 161 KAR-------YPDRLTVIHVLSREQGDPDLLR-GRLDAAKLNALLKNLLDATEFDEAFLCGPEPMMDAVEAALLELGVPA 232 (241)
T ss_pred HHH-------CCCCEEEEEEECCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCH
T ss_conf 986-------7797899999888998876656-75389999999874157877868999199999999999999869978
Q ss_pred CCCCCCCEEEEEEEEE
Q ss_conf 1567995099998763
Q gi|254780363|r 248 GSNSRPGTFVVERAFS 263 (264)
Q Consensus 248 ~~~~~~g~~~~E~~~~ 263 (264)
. +|++|+ |+
T Consensus 233 ~------~I~~E~-Ft 241 (241)
T cd06214 233 E------RIHREL-FT 241 (241)
T ss_pred H------HEEEEE-CC
T ss_conf 9------959831-59
No 4
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=100.00 E-value=0 Score=357.66 Aligned_cols=227 Identities=18% Similarity=0.271 Sum_probs=190.8
Q ss_pred CCCCEEEEEEEECCCCEEEEEEECC---CCCCCCCCCEEEEEEECCCEEEEEEEEECCCCC-CCCEEEEEEEECCCCCCC
Q ss_conf 5310689888847998699998077---899839971799998439858876654228576-886058999943888566
Q gi|254780363|r 11 NVYCESVISIKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLMVNGRRISRAYSMASPCW-DDKLEFFSIKVEQGPLTT 86 (264)
Q Consensus 11 ~~~~~~V~~v~~~t~~~~~~~l~~~---~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~-~~~le~~i~~v~~G~~S~ 86 (264)
..+.++|++++.+|+++..++|..+ ++++|+||||++|.++.. ..+|+|||||+|. ++.|||+|+++++|++|+
T Consensus 105 ~~~~~~v~~v~~l~~dv~~l~l~~~~~~~~~~f~pGQy~~l~~~g~--~~~R~YSias~P~~~~~le~~Ir~~p~G~~S~ 182 (340)
T PRK11872 105 LKIEGVVTAVELVSETTAILHLDAGAHGEQLDFLPGQYARLQIPGT--DDWRSYSFANRPNATNQLQFLIRLLPDGVMSN 182 (340)
T ss_pred CEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCC--CCCCCCCCCCCCCCCCEEEEEEEECCCCCCHH
T ss_conf 4571699999855996689999878988756769998089986798--86300057879999997999999738982048
Q ss_pred CCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 100-1238851002578873216432235866999975867277899887634103578579999519988987335668
Q gi|254780363|r 87 HLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVM 165 (264)
Q Consensus 87 ~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~ 165 (264)
||+ ++++||+|.+++ |.|.|++.+ ..++++|||||||||||+|||+++...+..++|+|+||+|+.+|++|.+++.
T Consensus 183 ~L~~~l~~Gd~l~v~g-P~G~F~l~~--~~~plvlIAgGtGiaPilSmL~~l~~~~~~~~v~L~~G~R~~~dl~~~~el~ 259 (340)
T PRK11872 183 YLRDRCQVGDELLIEA-PLGSFYLRQ--VERPLVFVAGGTGLSAFLGMLDNLVEQGCSPPVHLYYGVRSEADLCELQRIA 259 (340)
T ss_pred HHHHCCCCCCEEEEEC-CCCCEEECC--CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 8985689999899962-731179636--7886799944865377999999999818998679999649979977799999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 98986445777405884389820454444465677543110478852899887313789996898999999999998698
Q gi|254780363|r 166 HEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKF 245 (264)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~ 245 (264)
.+.... .+|+|++++|+++..|.|+. |.+.+.+....+.+.+..+|+||||+||+++++.|.++|+
T Consensus 260 ~l~~~~--------~~~~~~~vls~~~~~w~g~~------G~v~~~~~~~~~~~~~~~vYlCGPp~mv~a~~~~L~~~Gv 325 (340)
T PRK11872 260 AYAERL--------PNFRFHPVVSKATEDWQGKR------GYIHEHFDKDQLREQAFDMYLCGPPPMVEAVKQWLDEQAL 325 (340)
T ss_pred HHHHHC--------CCEEEEEEECCCCCCCCCCC------CCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 988767--------99499999877898877763------8688998853578889999990999999999999998699
Q ss_pred CCCCCCCCCEEEEEEEEE
Q ss_conf 531567995099998763
Q gi|254780363|r 246 REGSNSRPGTFVVERAFS 263 (264)
Q Consensus 246 ~~~~~~~~g~~~~E~~~~ 263 (264)
.+. +|++|+ |+
T Consensus 326 ~~~------~I~~E~-F~ 336 (340)
T PRK11872 326 QNY------RLYSEK-FT 336 (340)
T ss_pred CHH------HEEEEE-CC
T ss_conf 889------968861-53
No 5
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=100.00 E-value=0 Score=350.43 Aligned_cols=231 Identities=19% Similarity=0.296 Sum_probs=188.4
Q ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEE--CCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCC-CCCEEEEEEEECCCC
Q ss_conf 436653106898888479986999980--77899839971799998439858876654228576-886058999943888
Q gi|254780363|r 7 KLPVNVYCESVISIKHYTDRLFRFCIT--RPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCW-DDKLEFFSIKVEQGP 83 (264)
Q Consensus 7 ~~p~~~~~~~V~~v~~~t~~~~~~~l~--~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~-~~~le~~i~~v~~G~ 83 (264)
..|.+.+.++|++++++|+++++|+|. .++++.|+||||+.|.++. | .+|+|||||+|. ++.|||+|+++++|.
T Consensus 97 ~~~~~~~~a~v~~~~~lt~dv~~l~l~l~~~~~~~f~pGQy~~l~~~~-~--~~R~YSiAs~P~~~~~lef~Ir~~p~G~ 173 (337)
T PRK07609 97 DIPVKKLPCRVASLERVAGDVMIVKLRLPATERLQYLAGQYIELILKD-G--KRRSYSIANAPHSGGPLELHIRHMPGGV 173 (337)
T ss_pred CCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEECC-C--CEEEEEECCCCCCCCEEEEEEEECCCCC
T ss_conf 567417878999973288886999998589975666898879999769-9--5287750568899998999998338976
Q ss_pred CCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 566100-1238851002578873216432235866999975867277899887634103578579999519988987335
Q gi|254780363|r 84 LTTHLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGI 162 (264)
Q Consensus 84 ~S~~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~ 162 (264)
+|+||+ ++++||+|.+++ |+|.|+++.. +.++++|||||||||||+||++++...+..++|+|+||+|+++|++|.+
T Consensus 174 ~S~~L~~~l~~Gd~l~v~g-P~G~f~l~~~-~~rplvlIAgGtGiaPi~Sml~~~~~~~~~~~i~L~~G~R~~~dly~~e 251 (337)
T PRK07609 174 FTDHVFGALKERDILRIEG-PLGTFFLRED-SDKPIVLLASGTGFAPIKSIVEHLRAKGIQRPVHLYWGVRRPKDLYLSA 251 (337)
T ss_pred CCHHHHHCCCCCCEEEEEC-CCCCEEECCC-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 7188983689999999976-8444370677-8997899965615678999999999739998189998359879864399
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHH
Q ss_conf 66898986445777405884389820454-44446567754311047885289988731378999689899999999999
Q gi|254780363|r 163 DVMHEISQDEILKDLIGQKLKFYRTVTQE-DYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLI 241 (264)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~e-~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~ 241 (264)
++..+.+.+ .+|+|++++|++ +..|.||. |.+.+.+.....+..+..+|+||||+||+++++.|.
T Consensus 252 ~l~~l~~~~--------~~~~~~~vls~~~~~~w~G~~------G~v~~~v~~~~~~~~~~~vYlCGPp~Mv~a~~~~L~ 317 (337)
T PRK07609 252 LAEQWAEEL--------PNFRYVPVVSDPDAEDWTGRT------GFVHQAVLEDFPDLSGHQVYACGSPVMVYAARDDFV 317 (337)
T ss_pred HHHHHHHHC--------CCCEEEEEECCCCCCCCCCCC------CCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 999998648--------984899997778877767760------538899996579966889999799999999999999
Q ss_pred HCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 8698531567995099998763
Q gi|254780363|r 242 AKKFREGSNSRPGTFVVERAFS 263 (264)
Q Consensus 242 ~~G~~~~~~~~~g~~~~E~~~~ 263 (264)
++|+.+ .+|+.|+ |.
T Consensus 318 ~~Gv~~------~~I~~E~-F~ 332 (337)
T PRK07609 318 AAGLPA------EEFFADA-FT 332 (337)
T ss_pred HCCCCH------HHEEEEE-CC
T ss_conf 859988------9979820-34
No 6
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=100.00 E-value=0 Score=350.69 Aligned_cols=236 Identities=17% Similarity=0.256 Sum_probs=188.4
Q ss_pred CCCCCCCCCEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEECC-----------------------------C
Q ss_conf 443665310689888847998699998077--899839971799998439-----------------------------8
Q gi|254780363|r 6 PKLPVNVYCESVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLMVN-----------------------------G 54 (264)
Q Consensus 6 ~~~p~~~~~~~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~~~-----------------------------g 54 (264)
..+..+.+.+||++++++|+++++|+|..+ +.+.|+||||++|.+|.. +
T Consensus 3 ~~~~~~~~~~~v~s~~~lt~di~~~~l~l~~~~~~~f~aGQyv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (283)
T cd06188 3 EVLGAKKWECTVISNDNVATFIKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHD 82 (283)
T ss_pred CCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 55675167899997436768728999987999815225887799960786544444554234444565415211002467
Q ss_pred EEEEEEEEECCCCCC-CCEEEEEE---------EECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 588766542285768-86058999---------94388856610012388510025788732164322358669999758
Q gi|254780363|r 55 RRISRAYSMASPCWD-DKLEFFSI---------KVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTG 124 (264)
Q Consensus 55 ~~~~R~YSiaS~p~~-~~le~~i~---------~v~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgG 124 (264)
+.++|+|||||+|++ +.|||+|+ ++++|.+|+||+++++||+|.+++ |.|.|.+++ ..++++|||||
T Consensus 83 ~~~~R~ySiAs~P~~~~~le~~Ir~~~~~~~~~~vp~G~~S~~l~~lk~Gd~v~i~g-P~G~f~l~~--~~~~lvlIAgG 159 (283)
T cd06188 83 EPVSRAYSLANYPAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASG-PFGEFFIKD--TDREMVFIGGG 159 (283)
T ss_pred CCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCEEEEEC-CCCCCEECC--CCCCEEEEEEC
T ss_conf 764143135789999996999999821885546689851356886499999899964-645617157--88852899835
Q ss_pred CCHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCCCCCC
Q ss_conf 6727789988763410-3578579999519988987335668989864457774058843898204544--444656775
Q gi|254780363|r 125 TGIAPFVSVIRDPGTY-EKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED--YLYKGRITN 201 (264)
Q Consensus 125 tGItP~~sii~~~~~~-~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~--~~~~grit~ 201 (264)
||||||+|||++.... +..++|+|+||+|+++|++|.+++..+...+ .||+|++++|++. ..|.|+. +
T Consensus 160 tGIaPl~Sml~~~l~~~~~~r~v~l~ygaR~~~dl~~~~el~~l~~~~--------~n~~~~~vlS~~~~~~~w~g~~-G 230 (283)
T cd06188 160 AGMAPLRSHIFHLLKTLKSKRKISFWYGARSLKELFYQEEFEALEKEF--------PNFKYHPVLSEPQPEDNWDGYT-G 230 (283)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHC--------CCEEEEEEECCCCCCCCCCCCC-C
T ss_conf 674469999999998269997289999708889974499999999768--------9979999978778666777861-7
Q ss_pred CCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 43110478852899887313789996898999999999998698531567995099998
Q gi|254780363|r 202 HILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGTFVVER 260 (264)
Q Consensus 202 ~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~~~~E~ 260 (264)
.+.. .+.+.+.....++++..+|+||||+||+++++.|.++|+.+. +|++|+
T Consensus 231 ~V~~-~~~~~~~~~~~~~~~~~vYlCGPp~Mv~a~~~~L~~~Gv~~~------~I~~E~ 282 (283)
T cd06188 231 FIHQ-VLLENYLKKHPAPEDIEFYLCGPPPMNSAVIKMLDDLGVPRE------NIAFDD 282 (283)
T ss_pred CCCH-HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH------HEEECC
T ss_conf 6348-999999964899678799994989999999999998599889------957332
No 7
>PRK08051 fre FMN reductase; Validated
Probab=100.00 E-value=0 Score=348.85 Aligned_cols=227 Identities=18% Similarity=0.194 Sum_probs=189.7
Q ss_pred CCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC-
Q ss_conf 3106898888479986999980778998399717999984398588766542285768-86058999943888566100-
Q gi|254780363|r 12 VYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ- 89 (264)
Q Consensus 12 ~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~- 89 (264)
...++|++++++|+++++|+|.++.+++|+||||+.|.+... ..|+|||||+|.+ +.|||+|+++++|.+|+++.
T Consensus 2 t~~a~V~~i~~lt~dv~~l~L~~~~~~~f~pGQy~~l~~~~~---~~R~ySias~P~~~~~lel~I~~~~~g~~~~~l~~ 78 (232)
T PRK08051 2 TISCKVTSVEPITDTVYRVRLVPEQPFSFKAGQYLMVVMGEK---DKRPFSIASTPDEKGFIELHIGASELNSYAMAVVE 78 (232)
T ss_pred CEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECCC---CCEEECCCCCCCCCCEEEEEEEECCCCCCHHHHHH
T ss_conf 278999998706998699999459988889998599991898---86783367789999829999754289842589996
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 12388510025788732164322358669999758672778998876341035785799995199889873356689898
Q gi|254780363|r 90 NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEIS 169 (264)
Q Consensus 90 ~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~ 169 (264)
++++||+|.+++ |+|.|.++. ...++++|||||||||||+||++++...+..++++|+||+|+++|++|.+++..+.+
T Consensus 79 ~l~~G~~v~v~g-P~G~f~l~~-~~~~p~vlIAgGtGiaPi~Sml~~~~~~~~~~~i~L~~g~r~~~dl~~~~el~~l~~ 156 (232)
T PRK08051 79 RLLKDGEIEVDA-PHGDAWLRD-ESERPLLLIAGGTGFSYARSILLTALARGPKRPITLYWGGREEDHLYDLDELEALSL 156 (232)
T ss_pred CCCCCCEEEEEC-CCCCEEECC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCHHHHHHHHH
T ss_conf 089999999966-720569578-888838999717366578999999998599974899995599899638999999998
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHH-HHCCCCCC
Q ss_conf 64457774058843898204544444656775431104788528998873137899968989999999999-98698531
Q gi|254780363|r 170 QDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLL-IAKKFREG 248 (264)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L-~~~G~~~~ 248 (264)
.+ .||+|++++|+++..|.|+. |.+.+.+.....+..+..+|+||||+|++++++.| .++|+.+.
T Consensus 157 ~~--------~~~~~~~~~~~~~~~w~g~~------G~v~~~i~~~~~~~~~~~~ylCGPp~Mv~a~~~~L~~~~Gv~~~ 222 (232)
T PRK08051 157 KH--------PNLHFVPVVEQPEEGWRGKT------GTVLTAVMQDFGSLAEYDIYIAGRFEMAKAARELFCRERGAREE 222 (232)
T ss_pred HC--------CCCEEEEEECCCCCCCCCCC------CCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCHH
T ss_conf 88--------99179999815998868860------73899998653686589899979999999999999997599989
Q ss_pred CCCCCCEEEEEEEEEC
Q ss_conf 5679950999987639
Q gi|254780363|r 249 SNSRPGTFVVERAFSL 264 (264)
Q Consensus 249 ~~~~~g~~~~E~~~~~ 264 (264)
+|+.|. |++
T Consensus 223 ------~I~~e~-F~~ 231 (232)
T PRK08051 223 ------HLFGDA-FAF 231 (232)
T ss_pred ------HEEEEE-EEE
T ss_conf ------989743-574
No 8
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=100.00 E-value=0 Score=344.78 Aligned_cols=233 Identities=17% Similarity=0.198 Sum_probs=188.8
Q ss_pred CCCCEEEEEEEECCCCEEEEEEECCCC---CCCCCCCEEEEEEECCC--EEEEEEEEECCCCCCCCEEEEEEEECCCCCC
Q ss_conf 531068988884799869999807789---98399717999984398--5887665422857688605899994388856
Q gi|254780363|r 11 NVYCESVISIKHYTDRLFRFCITRPKS---FRFRSGEFVMLGLMVNG--RRISRAYSMASPCWDDKLEFFSIKVEQGPLT 85 (264)
Q Consensus 11 ~~~~~~V~~v~~~t~~~~~~~l~~~~~---~~f~~GQ~v~i~~~~~g--~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S 85 (264)
++...+|++++++|+++++|+|.++++ ++|+||||+.|.++.+| ..+.|+|||||+|+++.++|.|+++++|.+|
T Consensus 5 g~~~~~V~~~~~et~dv~~~~l~~~dg~~~~~f~pGQ~v~v~~~~~g~~~~~~R~YSiss~p~~~~~~i~Vkr~~~G~~S 84 (247)
T cd06184 5 GFRPFVVARKVAESEDITSFYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNGDYYRISVKREPGGLVS 84 (247)
T ss_pred CCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCEEEEEEEECCCCCHH
T ss_conf 87978999999948995999998589882888399981899999689874688888981589999899999989999532
Q ss_pred CCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 6100-123885100257887321643223586699997586727789988763410357857999951998898733566
Q gi|254780363|r 86 THLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDV 164 (264)
Q Consensus 86 ~~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l 164 (264)
+||+ ++++||+|.+++ |+|.|+++.. ..++++|||||||||||+||++++...+..++++|+||+|+.+|++|.+++
T Consensus 85 ~~l~~~l~~Gd~v~v~g-P~G~f~l~~~-~~~~~vlIAgG~GItP~~sml~~l~~~~~~~~i~l~yg~r~~~d~~~~~eL 162 (247)
T cd06184 85 NYLHDNVKVGDVLEVSA-PAGDFVLDEA-SDRPLVLISAGVGITPMLSMLEALAAEGPGRPVTFIHAARNSAVHAFRDEL 162 (247)
T ss_pred HHHHHCCCCCCEEEEEE-CCCCEEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 69983789998999981-7875673257-898689996687635499999999864999848999956997993789999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 89898644577740588438982045444446567754311047885289988731378999689899999999999869
Q gi|254780363|r 165 MHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKK 244 (264)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G 244 (264)
..+.... .+|++..++|++...|.+.. ....|++..........+.++.+|+|||++||+++.+.|.++|
T Consensus 163 ~~l~~~~--------~~~~~~~~~s~~~~~~~~~~--~~~~Gri~~~~l~~~~~~~~~~vy~CGP~~mi~~~~~~L~~~G 232 (247)
T cd06184 163 EELAARL--------PNLKLHVFYSEPEAGDREED--YDHAGRIDLALLRELLLPADADFYLCGPVPFMQAVREGLKALG 232 (247)
T ss_pred HHHHHHC--------CCEEEEEEECCCCCCCCCCC--CCCCCCCCHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 9999768--------99599999887885555677--7512652899997318999989999398999999999999769
Q ss_pred CCCCCCCCCCEEEEEEE
Q ss_conf 85315679950999987
Q gi|254780363|r 245 FREGSNSRPGTFVVERA 261 (264)
Q Consensus 245 ~~~~~~~~~g~~~~E~~ 261 (264)
+.+. +|+.|+|
T Consensus 233 v~~~------~I~~E~F 243 (247)
T cd06184 233 VPAE------RIHYEVF 243 (247)
T ss_pred CCHH------HEEEEEE
T ss_conf 9789------5999000
No 9
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00 E-value=0 Score=343.06 Aligned_cols=222 Identities=18% Similarity=0.272 Sum_probs=187.5
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC-CCC
Q ss_conf 6898888479986999980778998399717999984398588766542285768-86058999943888566100-123
Q gi|254780363|r 15 ESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ-NIQ 92 (264)
Q Consensus 15 ~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~-~l~ 92 (264)
++|++|+++|+++++|+|++|+.++|+||||+.|.++..+ .|+|||+|+|++ +.++|.++++++|.+|++|+ +++
T Consensus 1 ckV~~i~~~t~dv~~l~l~~~~~~~f~pGQ~v~v~~~~~~---~R~ySi~s~p~~~~~l~l~ik~~~~G~~s~~l~~~l~ 77 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDGD---KRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELK 77 (224)
T ss_pred CEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECCCC---EEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHCCC
T ss_conf 9888989848996999996699888789974899959987---8998616589999839999999679815889985499
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88510025788732164322358669999758672778998876341035785799995199889873356689898644
Q gi|254780363|r 93 PGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDE 172 (264)
Q Consensus 93 ~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~ 172 (264)
+||+|.+++ |+|.|.++.. +.++++|||||||||||+||++++...+..++++|+||+|+++|++|.+++..+....
T Consensus 78 ~Gd~v~v~g-P~G~f~l~~~-~~~~~vlIAgG~GItP~~s~l~~~~~~~~~~~v~l~~g~r~~~~~~~~~el~~l~~~~- 154 (224)
T cd06189 78 ENGLVRIEG-PLGDFFLRED-SDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDELLEAWAEAH- 154 (224)
T ss_pred CCCEEEEEC-CCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHC-
T ss_conf 999899970-6757411567-8985899936877553999999999759999816774269979986899999999768-
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 57774058843898204544444656775431104788528998873137899968989999999999986985315679
Q gi|254780363|r 173 ILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSR 252 (264)
Q Consensus 173 ~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~ 252 (264)
.+++|++++|+++..|.|+. |.+.+.+.....++++..+|+||||+||+++.+.|.++|+.+.
T Consensus 155 -------~~~~~~~~~s~~~~~~~~~~------G~v~~~~~~~~~~~~~~~vyiCGP~~m~~~v~~~L~~~Gv~~~---- 217 (224)
T cd06189 155 -------PNFTYVPVLSEPEEGWQGRT------GLVHEAVLEDFPDLSDFDVYACGSPEMVYAARDDFVEKGLPEE---- 217 (224)
T ss_pred -------CCEEEEEEECCCCCCCCCCC------CCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH----
T ss_conf -------99599999756887756655------8089999965799669999991999999999999998599889----
Q ss_pred CCEEEEEEE
Q ss_conf 950999987
Q gi|254780363|r 253 PGTFVVERA 261 (264)
Q Consensus 253 ~g~~~~E~~ 261 (264)
+|++|.|
T Consensus 218 --~I~~E~F 224 (224)
T cd06189 218 --NFFSDAF 224 (224)
T ss_pred --HEEECCC
T ss_conf --9574119
No 10
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=100.00 E-value=0 Score=339.53 Aligned_cols=226 Identities=21% Similarity=0.358 Sum_probs=185.4
Q ss_pred CCEEEEEEEECCCCEEEEEEE--CCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC
Q ss_conf 106898888479986999980--778998399717999984398588766542285768-86058999943888566100
Q gi|254780363|r 13 YCESVISIKHYTDRLFRFCIT--RPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ 89 (264)
Q Consensus 13 ~~~~V~~v~~~t~~~~~~~l~--~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~ 89 (264)
|.+||++++++|+++++|+|. .++.++|+||||+.|.++ |..++|+|||+|+|.+ ++++|+|+++++|.+|+||+
T Consensus 1 ~~a~V~~i~~~t~di~~~~l~~~~~~~~~f~~GQ~v~~~~~--g~~~~R~ySi~s~p~~~~~~~l~Vk~~~~G~~s~~l~ 78 (232)
T cd06212 1 FVGTVVAVEALTHDIRRLRLRLEEPEPIKFFAGQYVDITVP--GTEETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLD 78 (232)
T ss_pred CEEEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEEEEEC--CCCCEEEEEECCCCCCCCEEEEEEEEECCCCHHHHHH
T ss_conf 91999999975899399999939999687189855999989--9881789974627999988999999977995588998
Q ss_pred -CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf -1238851002578873216432235866999975867277899887634103578579999519988987335668989
Q gi|254780363|r 90 -NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEI 168 (264)
Q Consensus 90 -~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~ 168 (264)
++++||+|.+++ |.|.|.+++. +.++++|||||||||||+||++++...+..++++|+||+|+++|++|.+++..+.
T Consensus 79 ~~l~~Gd~v~v~g-P~G~f~l~~~-~~~~~vliAgG~GitP~~sml~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~ 156 (232)
T cd06212 79 DGLAVGDPVTVTG-PYGTCTLRES-RDRPIVLIGGGSGMAPLLSLLRDMAASGSDRPVRFFYGARTARDLFYLEEIAALG 156 (232)
T ss_pred HCCCCCCEEEEEC-CCCCCEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 5589998999973-7567510678-8987899956877025999999999749997489998448878878899999999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCC--CCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 86445777405884389820454--4444656775431104788528998873137899968989999999999986985
Q gi|254780363|r 169 SQDEILKDLIGQKLKFYRTVTQE--DYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~s~e--~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
... .+|+|++++|++ +..|.|+ .|.+.+.+.....++.++.+|||||++|++++.+.|.++|+.
T Consensus 157 ~~~--------~~~~~~~~~s~~~~~~~~~g~------~g~i~~~l~~~~~~~~~~~vyiCGp~~m~~~~~~~L~~~Gv~ 222 (232)
T cd06212 157 EKI--------PDFTFIPALSESPDDEGWSGE------TGLVTEVVQRNEATLAGCDVYLCGPPPMIDAALPVLEMSGVP 222 (232)
T ss_pred HHC--------CCCEEEEEECCCCCCCCCCCC------CCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 878--------992999998337866676664------560889998328986799999939999999999999986998
Q ss_pred CCCCCCCCEEEEEEEEE
Q ss_conf 31567995099998763
Q gi|254780363|r 247 EGSNSRPGTFVVERAFS 263 (264)
Q Consensus 247 ~~~~~~~g~~~~E~~~~ 263 (264)
+. +|++|+ |+
T Consensus 223 ~~------~I~~E~-Ft 232 (232)
T cd06212 223 PD------QIFYDK-FT 232 (232)
T ss_pred HH------HEEEEE-CC
T ss_conf 89------958740-79
No 11
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=100.00 E-value=0 Score=337.63 Aligned_cols=225 Identities=22% Similarity=0.371 Sum_probs=183.3
Q ss_pred CCCEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 310689888847998699998077--899839971799998439858876654228576886058999943888566100
Q gi|254780363|r 12 VYCESVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQ 89 (264)
Q Consensus 12 ~~~~~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~ 89 (264)
.|.+||++|+++|+++++|+|..+ ..++|+||||+.|.++ |...+|+|||||+|+++.++|.|+++++|.+|++|+
T Consensus 1 t~~a~V~~v~~~t~di~~~~l~~~~~~~~~f~pGQ~v~l~~~--g~~~~R~ySias~p~~~~l~~~Ik~~~~G~~s~~l~ 78 (228)
T cd06209 1 TFEATVTEVERLSDSTIGLTLELDEAGALAFLPGQYVNLQVP--GTDETRSYSFSSAPGDPRLEFLIRLLPGGAMSSYLR 78 (228)
T ss_pred CEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEEEEC--CCCCEEEEEEECCCCCCEEEEEEEECCCCCHHHHHH
T ss_conf 989999998995899499999829999887489975999989--928468998700899798999999907995678998
Q ss_pred C-CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 1-238851002578873216432235866999975867277899887634103578579999519988987335668989
Q gi|254780363|r 90 N-IQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEI 168 (264)
Q Consensus 90 ~-l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~ 168 (264)
+ +++||+|.+++ |.|.|.+++ ..++++|||||||||||+||++++...+...+++|+||+|+.+|++|.+++..+.
T Consensus 79 ~~~~~Gd~v~i~g-P~G~f~l~~--~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~v~l~yg~r~~~d~~~~~~l~~l~ 155 (228)
T cd06209 79 DRAQPGDRLTLTG-PLGSFYLRE--VKRPLLMLAGGTGLAPFLSMLDVLAEDGSAHPVHLVYGVTRDADLVELDRLEALA 155 (228)
T ss_pred HCCCCCCEEEEEC-CCCCCCCCC--CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 5589999999970-354742357--8887899966877342999999999759998389998249789987899999999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 86445777405884389820454444465677543110478852899887313789996898999999999998698531
Q gi|254780363|r 169 SQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREG 248 (264)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~ 248 (264)
... .++++.+++++++. |.++ .|.+.+.+....++..+..+|+||||+||+++++.|.++|+.+.
T Consensus 156 ~~~--------~~~~~~~~~s~~~~-~~~~------~g~v~~~l~~~~~~~~~~~~yiCGP~~m~~~v~~~L~~~Gv~~~ 220 (228)
T cd06209 156 ERL--------PGFSFRTVVADPDS-WHPR------KGYVTDHLEAEDLNDGDVDVYLCGPPPMVDAVRSWLDEQGIEPA 220 (228)
T ss_pred HHC--------CCCEEEEEECCCCC-CCCC------CCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH
T ss_conf 878--------99399999816874-4453------48287888752478899799995999999999999998699889
Q ss_pred CCCCCCEEEEEEEEE
Q ss_conf 567995099998763
Q gi|254780363|r 249 SNSRPGTFVVERAFS 263 (264)
Q Consensus 249 ~~~~~g~~~~E~~~~ 263 (264)
+|+.|+ |+
T Consensus 221 ------~Ih~E~-Ft 228 (228)
T cd06209 221 ------NFYYEK-FT 228 (228)
T ss_pred ------HEEEEE-CC
T ss_conf ------938852-79
No 12
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=0 Score=337.56 Aligned_cols=221 Identities=22% Similarity=0.305 Sum_probs=186.5
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCC-CEEEEEEEECCCCCCCCCC-CCCCC
Q ss_conf 988884799869999807789983997179999843985887665422857688-6058999943888566100-12388
Q gi|254780363|r 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDD-KLEFFSIKVEQGPLTTHLQ-NIQPG 94 (264)
Q Consensus 17 V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~-~le~~i~~v~~G~~S~~L~-~l~~G 94 (264)
|++++++|+++++|+|+++++++|+||||+.|.++. +..++|+|||+|+|+++ .++|.++++++|.+|++|+ ++++|
T Consensus 1 vv~i~~~t~d~~~~~l~~~~~~~~~~GQ~v~l~~~~-~~~~~R~ySias~p~~~~~l~l~Vk~~~~G~~S~~L~~~l~~G 79 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQPLPFWAGQYVNVTVPG-RPRTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELKVG 79 (224)
T ss_pred CEEEEECCCCEEEEEEECCCCCCCCCCEEEEEEECC-CCEEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHCCCCC
T ss_conf 955898279859999985998872899879999889-8805897053688999988999999968984888998539999
Q ss_pred CEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 51002578873216432235866999975867277899887634103578579999519988987335668989864457
Q gi|254780363|r 95 DTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEIL 174 (264)
Q Consensus 95 d~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~ 174 (264)
|+|.+++ |.|.|+++... .++++|||||||||||+||++++...+...+++|+||+|+++|++|.+++..+...+
T Consensus 80 d~v~v~~-P~G~f~~~~~~-~~~~vliAgG~GItP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~--- 154 (224)
T cd06187 80 DRVRLSG-PYGTFYLRRDH-DRPVLCIAGGTGLAPLRAIVEDALRRGEPRPVHLFFGARTERDLYDLEGLLALAARH--- 154 (224)
T ss_pred CEEEEEC-CEECCEECCCC-CCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHC---
T ss_conf 9899971-77552516778-986899965756235999999999759998289997158879988899999999878---
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77405884389820454444465677543110478852899887313789996898999999999998698531567995
Q gi|254780363|r 175 KDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPG 254 (264)
Q Consensus 175 ~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g 254 (264)
.+|++++++|+++..|.++. |.+.+.+.....+++++.+|+|||++|++++.+.|.++|+.+.
T Consensus 155 -----~~~~~~~~~s~~~~~~~~~~------G~v~~~~~~~~~~~~~~~~yiCGP~~m~~~v~~~L~~~Gv~~~------ 217 (224)
T cd06187 155 -----PWLRVVPVVSHEEGAWTGRR------GLVTDVVGRDGPDWADHDIYICGPPAMVDATVDALLARGAPPE------ 217 (224)
T ss_pred -----CCEEEEEEECCCCCCCCCCC------CCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH------
T ss_conf -----99299999825898876664------7289999864788679899992999999999999998699789------
Q ss_pred EEEEEE
Q ss_conf 099998
Q gi|254780363|r 255 TFVVER 260 (264)
Q Consensus 255 ~~~~E~ 260 (264)
+|+.|.
T Consensus 218 ~i~~E~ 223 (224)
T cd06187 218 RIHFDK 223 (224)
T ss_pred HEEEEE
T ss_conf 979816
No 13
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=100.00 E-value=0 Score=334.48 Aligned_cols=226 Identities=20% Similarity=0.307 Sum_probs=184.8
Q ss_pred EEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCC-CC
Q ss_conf 689888847998699998077--899839971799998439858876654228576886058999943888566100-12
Q gi|254780363|r 15 ESVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQ-NI 91 (264)
Q Consensus 15 ~~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~-~l 91 (264)
.+|++++++|+++++|+|..+ ..+.|+||||+.|.++.+|..++|+|||||+|.++.++|.|+++++|.+|++|+ ++
T Consensus 1 lrV~~v~~~t~d~~~~~l~~~~~~~~~f~pGQ~v~~~~~~~g~~~~R~ySias~p~~~~l~~~Vk~~~~G~~S~~l~~~l 80 (231)
T cd06191 1 LRVAEVRSETPDAVTIVFAVPGPLQYGFRPGQHVTLKLDFDGEELRRCYSLCSSPAPDEISITVKRVPGGRVSNYLREHI 80 (231)
T ss_pred CEEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEEEEECCEEEEECCCCCCCCCCCEEEEEEEEECCCCHHHHHHHCC
T ss_conf 98999999489909999983898888859986799997168968771346678999998999999965996788997468
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 38851002578873216432235866999975867277899887634103578579999519988987335668989864
Q gi|254780363|r 92 QPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171 (264)
Q Consensus 92 ~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~ 171 (264)
++||+|.+++ |+|.|.++.. +.++++|||||||||||+|||++....+...+++|+||+|+++|++|.+++..+...
T Consensus 81 ~~Gd~v~i~g-P~G~f~l~~~-~~~~~lliAgG~GItP~~s~l~~~~~~~~~~~v~l~yg~r~~~d~~~~~eL~~l~~~- 157 (231)
T cd06191 81 QPGMTVEVMG-PQGHFVYQPQ-PPGRYLLVAAGSGITPLMAMIRATLQTAPESDFTLIHSARTPADMIFAQELRELADK- 157 (231)
T ss_pred CCCCEEEEEE-CCCCCEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH-
T ss_conf 9999999970-5346500678-888799995275327389999999985789858999826997994669999999864-
Q ss_pred HHHHHHHCCCCEEEEECCCCC--CCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 457774058843898204544--444656775431104788528998873137899968989999999999986985315
Q gi|254780363|r 172 EILKDLIGQKLKFYRTVTQED--YLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGS 249 (264)
Q Consensus 172 ~~~~~~~~~~~~~~~~~s~e~--~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~ 249 (264)
..+|++..++|+++ .+|.+.. ..+ ...+.+.+. .+..+..+|+||||+|++++++.|.++|+.+.
T Consensus 158 -------~~~~~~~~~~s~~~~~~~~~~~~-~~~-~~~~~~~~~---~~~~~~~~yiCGP~~m~~~~~~~L~~~Gv~~~- 224 (231)
T cd06191 158 -------PQRLRLLCIFTRETLDSDLLHGR-IDG-EQSLGAALI---PDRLEREAFICGPAGMMDAVETALKELGMPPE- 224 (231)
T ss_pred -------CCCCEEEEEEECCCCCCCCCCCC-CCC-HHHHHHHHC---CCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH-
T ss_conf -------89929999991678765655852-100-588987328---99889499993999999999999998799789-
Q ss_pred CCCCCEEEEEEE
Q ss_conf 679950999987
Q gi|254780363|r 250 NSRPGTFVVERA 261 (264)
Q Consensus 250 ~~~~g~~~~E~~ 261 (264)
+|+.|+|
T Consensus 225 -----~I~~E~F 231 (231)
T cd06191 225 -----RIHTERF 231 (231)
T ss_pred -----HEEEEEC
T ss_conf -----8898279
No 14
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=100.00 E-value=0 Score=333.79 Aligned_cols=223 Identities=21% Similarity=0.367 Sum_probs=184.0
Q ss_pred EEEEEEEECCCCEEEEEEECCCC--CCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC-C
Q ss_conf 68988884799869999807789--98399717999984398588766542285768-86058999943888566100-1
Q gi|254780363|r 15 ESVISIKHYTDRLFRFCITRPKS--FRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ-N 90 (264)
Q Consensus 15 ~~V~~v~~~t~~~~~~~l~~~~~--~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~-~ 90 (264)
.+|++++++|+++++|+|..+++ ++|+||||+.|.++.+|+.++|+|||||+|.+ +.++|+|+++++|.+|+||+ +
T Consensus 1 lrV~~~~~~t~dv~~~~l~~~~~~~~~f~aGQ~v~l~~~~~g~~~~R~ySias~p~~~~~~~~~Vk~~~~G~~S~~l~~~ 80 (231)
T cd06215 1 LRCVKIIQETPDVKTFRFAAPDGSLFAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDN 80 (231)
T ss_pred CEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCEEEEEEEEECCCCHHHHHHHC
T ss_conf 99999999699949999985998989858987799997669937876663355799999899999995598067899961
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 23885100257887321643223586699997586727789988763410357857999951998898733566898986
Q gi|254780363|r 91 IQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQ 170 (264)
Q Consensus 91 l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~ 170 (264)
+++||+|.+++ |+|.|++++. +.++++|||||||||||+||++++...+...+++|+||+|+.+|++|.+++..+...
T Consensus 81 l~~G~~v~v~g-P~G~f~l~~~-~~~~ivlIAgG~GitP~~s~l~~~~~~~~~~~v~l~~g~r~~~dl~~~~el~~l~~~ 158 (231)
T cd06215 81 LKVGDELWASG-PAGEFTLIDH-PADKLLLLSAGSGITPMMSMARWLLDTRPDADIVFIHSARSPADIIFADELEELARR 158 (231)
T ss_pred CCCCCEEEEEE-CCCCCCCCCC-CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 88999999970-3448745788-878789998167778479999999970999971899706997993579999999976
Q ss_pred HHHHHHHHCCCCEEEEECCCCC-CCCC---CCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 4457774058843898204544-4446---56775431104788528998873137899968989999999999986985
Q gi|254780363|r 171 DEILKDLIGQKLKFYRTVTQED-YLYK---GRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~s~e~-~~~~---grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
+ .++++.+++|+++ ..|. ||++.. .+.+. ..++.+..+|+||||+|++++++.|.++|+.
T Consensus 159 ~--------~~~~~~~~~s~~~~~~~~~~~Gri~~~----~l~~~----~~~~~~~~~yiCGP~~m~~~~~~~L~~~Gv~ 222 (231)
T cd06215 159 H--------PNFRLHLILEQPAPGAWGGYRGRLNAE----LLALL----VPDLKERTVFVCGPAGFMKAVKSLLAELGFP 222 (231)
T ss_pred C--------CCCEEEEEECCCCCCCCCCCCCCCCHH----HHHHH----CCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 8--------991999998888987665842652999----99743----7997897999949999999999999986997
Q ss_pred CCCCCCCCEEEEEEE
Q ss_conf 315679950999987
Q gi|254780363|r 247 EGSNSRPGTFVVERA 261 (264)
Q Consensus 247 ~~~~~~~g~~~~E~~ 261 (264)
+. +|+.|.|
T Consensus 223 ~~------~I~~E~F 231 (231)
T cd06215 223 MS------RFHQESF 231 (231)
T ss_pred HH------HEEEEEC
T ss_conf 89------7698179
No 15
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=100.00 E-value=0 Score=331.26 Aligned_cols=230 Identities=21% Similarity=0.368 Sum_probs=189.1
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEEEEECCCEEEEEEEEECCCCCC--CCEEEEEEEEC
Q ss_conf 7744366531068988884799869999807789-98399717999984398588766542285768--86058999943
Q gi|254780363|r 4 VSPKLPVNVYCESVISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRRISRAYSMASPCWD--DKLEFFSIKVE 80 (264)
Q Consensus 4 ~~~~~p~~~~~~~V~~v~~~t~~~~~~~l~~~~~-~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~--~~le~~i~~v~ 80 (264)
+.|..-...+.++|++++++|+++++|+|+++.. ++|+||||+.|.++.+|...+|+|||||+|.+ ++++++|++++
T Consensus 9 ~~p~~~~r~~~a~V~~i~~~t~dv~~l~l~p~~~~~~f~pGQ~v~l~~~~~g~~~~R~ySias~p~~~~~~l~l~Vk~~~ 88 (243)
T cd06216 9 INPLWSARELRARVVAVRPETADMVTLTLRPNRGWPGHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQP 88 (243)
T ss_pred CCCCCCCCEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEEEEEC
T ss_conf 47241078758999999990899199999989978872899879999714990777776555699999989999999938
Q ss_pred CCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 8885661001-238851002578873216432235866999975867277899887634103578579999519988987
Q gi|254780363|r 81 QGPLTTHLQN-IQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQ 159 (264)
Q Consensus 81 ~G~~S~~L~~-l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~ 159 (264)
+|.+|++|++ +++||+|.+++ |.|.|.++.. ..++++|||||||||||+||++++...+..++++|+||+|+.+|++
T Consensus 89 ~G~~S~~L~~~l~~Gd~v~v~g-P~G~F~l~~~-~~~~~vliAgG~GitP~~sml~~l~~~~~~~~v~l~yg~r~~~d~~ 166 (243)
T cd06216 89 DGLVSNWLVNHLAPGDVVELSQ-PQGDFVLPDP-LPPRLLLIAAGSGITPVMSMLRTLLARGPTADVVLLYYARTREDVI 166 (243)
T ss_pred CCCHHHHHHHCCCCCCEEEEEC-CCCCCCCCCC-CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHH
T ss_conf 9916889985489999999956-6047424887-8887899990787782899999999739999999997128889988
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHH
Q ss_conf 33566898986445777405884389820454444465677543110478852899887313789996898999999999
Q gi|254780363|r 160 YGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDL 239 (264)
Q Consensus 160 y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~ 239 (264)
|.+++.++...+ .++++..++|++. +.||++. ..+.+.. .+..+..+|+||||+||+++++.
T Consensus 167 ~~~eL~~l~~~~--------~~~~~~~~~s~~~--~~g~~~~----~~l~~~~----~d~~~~~vyiCGPp~M~~av~~~ 228 (243)
T cd06216 167 FADELRALAAQH--------PNLRLHLLYTREE--LDGRLSA----AHLDAVV----PDLADRQVYACGPPGFLDAAEEL 228 (243)
T ss_pred HHHHHHHHHHHC--------CCEEEEEEECCCC--CCCCCCH----HHHHHHC----CCCCCCEEEEECCHHHHHHHHHH
T ss_conf 899999999778--------9929999988876--5788599----9998547----88789789993989999999999
Q ss_pred HHHCCCCCCCCCCCCEEEEEE
Q ss_conf 998698531567995099998
Q gi|254780363|r 240 LIAKKFREGSNSRPGTFVVER 260 (264)
Q Consensus 240 L~~~G~~~~~~~~~g~~~~E~ 260 (264)
|.++|+.+ +|++|.
T Consensus 229 L~~~Gv~~-------~ih~E~ 242 (243)
T cd06216 229 LEAAGLAD-------RLHTER 242 (243)
T ss_pred HHHCCCCC-------CEEEEE
T ss_conf 98589721-------208535
No 16
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=100.00 E-value=0 Score=332.22 Aligned_cols=222 Identities=18% Similarity=0.301 Sum_probs=184.9
Q ss_pred CEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC-CC
Q ss_conf 06898888479986999980778998399717999984398588766542285768-86058999943888566100-12
Q gi|254780363|r 14 CESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ-NI 91 (264)
Q Consensus 14 ~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~-~l 91 (264)
.+||++++++|+|+++|+|..+++++|+||||+.|.++ |....|+|||||+|.+ +.++|.++++++|.+|++|+ ++
T Consensus 2 ~a~v~~~~~~t~dv~~~~l~~~~~~~f~pGQ~v~l~~~--g~~~~R~ySias~p~~~~~i~~~Vk~~~~G~~s~~l~~~l 79 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRPIAYKAGQYAELTLP--GLPAARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGAD 79 (227)
T ss_pred EEEEEEEEEECCCEEEEEEECCCCCCCCCCEEEEEEEC--CCCCCCEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHCC
T ss_conf 89999999937994999998299888199858999989--9075203455368998888999999867994278998438
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 38851002578873216432235866999975867277899887634103578579999519988987335668989864
Q gi|254780363|r 92 QPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171 (264)
Q Consensus 92 ~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~ 171 (264)
++||+|.+++ |.|.|.++. ..++++|||||||||||+||++++...+...+++|+||+|+.+|++|.+++..+..
T Consensus 80 ~~Gd~v~v~g-P~G~f~l~~--~~~~ivliAgG~GItP~~s~l~~~~~~~~~~~v~l~~g~r~~~dl~~~~el~~l~~-- 154 (227)
T cd06213 80 RTGERLTVRG-PFGDFWLRP--GDAPILCIAGGSGLAPILAILEQARAAGTKRDVTLLFGARTQRDLYALDEIAAIAA-- 154 (227)
T ss_pred CCCCEEEEEC-CCCCEEECC--CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHH--
T ss_conf 9998999974-733648327--99858999768464409999999997399877478751599899752999999987--
Q ss_pred HHHHHHHCCCCEEEEECCCCC--CCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 457774058843898204544--444656775431104788528998873137899968989999999999986985315
Q gi|254780363|r 172 EILKDLIGQKLKFYRTVTQED--YLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGS 249 (264)
Q Consensus 172 ~~~~~~~~~~~~~~~~~s~e~--~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~ 249 (264)
.+..+|++++++|+++ ..|.|+. |.+.+.+. ...++++.+|+||||+|++++++.|.++|+.+.
T Consensus 155 -----~~~~~~~~~~~~s~~~~~~~~~g~~------g~v~~~l~--~~~~~~~~~y~CGp~~m~~~v~~~L~~~Gv~~~- 220 (227)
T cd06213 155 -----RWRGRFRFIPVLSEEPADSSWKGAR------GLVTEHIA--EVLLAATEAYLCGPPAMIDAAIAVLRALGIARE- 220 (227)
T ss_pred -----HCCCCEEEEEEECCCCCCCCCCCCC------CCHHHHHH--HHCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH-
T ss_conf -----4679669999964688888855755------74889886--146799999993999999999999998599889-
Q ss_pred CCCCCEEEEEEE
Q ss_conf 679950999987
Q gi|254780363|r 250 NSRPGTFVVERA 261 (264)
Q Consensus 250 ~~~~g~~~~E~~ 261 (264)
+|+.|.|
T Consensus 221 -----~I~~E~F 227 (227)
T cd06213 221 -----HIHADRF 227 (227)
T ss_pred -----HEEEEEC
T ss_conf -----9797159
No 17
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=0 Score=329.57 Aligned_cols=226 Identities=19% Similarity=0.294 Sum_probs=184.1
Q ss_pred CCEEEEEEEECCCCEEEEEEECCC------CCCCCCCCEEEEEEECCCEEEEEEEEECCCCC-CCCEEEEEEEECCCCCC
Q ss_conf 106898888479986999980778------99839971799998439858876654228576-88605899994388856
Q gi|254780363|r 13 YCESVISIKHYTDRLFRFCITRPK------SFRFRSGEFVMLGLMVNGRRISRAYSMASPCW-DDKLEFFSIKVEQGPLT 85 (264)
Q Consensus 13 ~~~~V~~v~~~t~~~~~~~l~~~~------~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~-~~~le~~i~~v~~G~~S 85 (264)
-.++|++++++|+++++|+|++++ .++|+||||+.|.++ |..++|+|||+|+|. ++.++|.|+++++|.+|
T Consensus 2 rea~V~~~~~~t~di~~~~l~~~~~~~~~~~~~f~pGQ~v~l~~~--g~~~~R~ySi~s~p~~~~~l~~~vk~~~~G~~S 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIP--GTDTRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred EEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEC--CCCEEEEEEEEECCCCCCEEEEEEEEECCCCHH
T ss_conf 279999989728986999999689777678688989960899989--988089887602799999899999998499467
Q ss_pred CCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 6100-123885100257887321643223586699997586727789988763410357857999951998898733566
Q gi|254780363|r 86 THLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDV 164 (264)
Q Consensus 86 ~~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l 164 (264)
+||+ ++++||+|.+++ |.|.|++++. ..++++|||||||||||+||++++...+...+++|+||+|+.+|++|.+++
T Consensus 80 ~~l~~~l~~Gd~v~v~g-P~G~f~l~~~-~~~~~~liAgG~GItP~~s~l~~l~~~~~~~~~~l~~g~r~~~d~~~~~el 157 (236)
T cd06210 80 TYLETRAKVGQRLNLRG-PLGAFGLREN-GLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVNTEAELFYLDEL 157 (236)
T ss_pred HHHHHCCCCCCEEEEEE-CCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 79985599999999970-6457501656-888689994686520799999999972999728999742877778999999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 89898644577740588438982045444446567754311047885289988731378999689899999999999869
Q gi|254780363|r 165 MHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKK 244 (264)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G 244 (264)
..+.... .++++.+++++++..|.|+. +.+. ..+.+.+ ... ..+..+|+|||++||+++.+.|.++|
T Consensus 158 ~~l~~~~--------~~~~~~~~~~~~~~~~~g~~-g~~~-~~l~~~l--~~~-~~~~~vyvCGP~~m~~~~~~~l~~~G 224 (236)
T cd06210 158 KRLADSL--------PNLTVRICVWRPGGEWEGYR-GTVV-DALREDL--ASS-DAKPDIYLCGPPGMVDAAFAAAREAG 224 (236)
T ss_pred HHHHHHC--------CCCEEEEEEECCCCCCCCCC-CCHH-HHHHHHH--CCC-CCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 9999878--------99399999954799757664-7589-9999761--147-89978999599999999999999869
Q ss_pred CCCCCCCCCCEEEEEEEE
Q ss_conf 853156799509999876
Q gi|254780363|r 245 FREGSNSRPGTFVVERAF 262 (264)
Q Consensus 245 ~~~~~~~~~g~~~~E~~~ 262 (264)
+.+. +|+.|+ |
T Consensus 225 v~~~------~I~~E~-F 235 (236)
T cd06210 225 VPDE------QVYLEK-F 235 (236)
T ss_pred CCHH------HEEEEE-C
T ss_conf 9889------959834-7
No 18
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=100.00 E-value=0 Score=329.87 Aligned_cols=232 Identities=19% Similarity=0.268 Sum_probs=187.3
Q ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCC
Q ss_conf 43665310689888847998699998077--8998399717999984398588766542285768-86058999943888
Q gi|254780363|r 7 KLPVNVYCESVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGP 83 (264)
Q Consensus 7 ~~p~~~~~~~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~ 83 (264)
.||.+.|.++|++++++|+++++|+|..+ ..++|+||||+.|.++ |....|+|||||+|.+ +++++.++++++|.
T Consensus 1 ~~~~~~~~a~v~~i~~~t~dv~~~~l~~~~~~~~~f~pGQ~i~l~~~--~~~~~R~ySi~s~p~~~~~~~l~vk~~~~G~ 78 (238)
T cd06211 1 LLNVKDFEGTVVEIEDLTPTIKGVRLKLDEPEEIEFQAGQYVNLQAP--GYEGTRAFSIASSPSDAGEIELHIRLVPGGI 78 (238)
T ss_pred CCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEEC--CEECCCCCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf 97742789999999985898299999928998277499848999989--9804672125678999987999999967998
Q ss_pred CCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 566100-1238851002578873216432235866999975867277899887634103578579999519988987335
Q gi|254780363|r 84 LTTHLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGI 162 (264)
Q Consensus 84 ~S~~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~ 162 (264)
+|+||+ ++++||+|.+++ |.|.|.++.. ..++++|||||||||||+||++++...+...+++|+||+|+++|++|.+
T Consensus 79 ~s~~l~~~l~~Gd~v~v~g-P~G~f~l~~~-~~~~~vlIAgG~GItP~~s~l~~l~~~~~~~~v~l~~~~r~~~d~~~~~ 156 (238)
T cd06211 79 ATTYVHKQLKEGDELEISG-PYGDFFVRDS-DQRPIIFIAGGSGLSSPRSMILDLLERGDTRKITLFFGARTRAELYYLD 156 (238)
T ss_pred CCHHHHHCCCCCCEEEEEC-CCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 5366774489999999970-5557643557-8887899974877245999999999759996499994268879989999
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCC--CCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHH
Q ss_conf 668989864457774058843898204544--444656775431104788528998873137899968989999999999
Q gi|254780363|r 163 DVMHEISQDEILKDLIGQKLKFYRTVTQED--YLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLL 240 (264)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~--~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L 240 (264)
++..+.... .+|++++++|++. ..|.|+. +.+ ...+.+.+ ..+..++.+|+|||++|++++++.|
T Consensus 157 el~~l~~~~--------~~~~~~~~ls~~~~~~~~~~~~-g~v-~~~~~~~~---~~~~~~~~~yiCGP~~m~~av~~~L 223 (238)
T cd06211 157 EFEALEKDH--------PNFKYVPALSREPPESNWKGFT-GFV-HDAAKKHF---KNDFRGHKAYLCGPPPMIDACIKTL 223 (238)
T ss_pred HHHHHHHHC--------CCEEEEEEECCCCCCCCCCCCC-CCH-HHHHHHHH---CCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 999999878--------9849999987578665546752-528-79998750---4566897899959999999999999
Q ss_pred HHCCCCCCCCCCCCEEEEEEE
Q ss_conf 986985315679950999987
Q gi|254780363|r 241 IAKKFREGSNSRPGTFVVERA 261 (264)
Q Consensus 241 ~~~G~~~~~~~~~g~~~~E~~ 261 (264)
+++|+.+. +|++|++
T Consensus 224 ~~~Gv~~~------~I~~E~F 238 (238)
T cd06211 224 MQGRLFER------DIYYEKF 238 (238)
T ss_pred HHCCCCHH------HEEEEEC
T ss_conf 98699889------9898069
No 19
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=100.00 E-value=0 Score=330.66 Aligned_cols=230 Identities=17% Similarity=0.282 Sum_probs=181.7
Q ss_pred CCCCCC--CEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCC
Q ss_conf 366531--06898888479986999980778998399717999984398588766542285768-860589999438885
Q gi|254780363|r 8 LPVNVY--CESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPL 84 (264)
Q Consensus 8 ~p~~~~--~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~ 84 (264)
||.... ..+|.+|+++|+++++|+|..++.++|+||||+.|.++ ++..++|+|||+|+|++ +++++.++++++|.+
T Consensus 4 ~~~~~~~~~l~V~~i~~eT~dv~s~~l~~~d~~~f~pGQ~i~v~i~-~~~~~~R~YSlss~P~~~~~~~itVkr~~~G~~ 82 (335)
T PRK10684 4 MPTPQCPNRMQVHSIVQETPDVWTISLICHDFYPYRAGQYALVSIR-NSAETLRAYTLSSTPGVSEFITLTVRRIDDGVG 82 (335)
T ss_pred CCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEEEC-CCCCCEEEEECCCCCCCCCEEEEEEEEECCCCC
T ss_conf 8899997047999999879993899997599898499986899977-999517876778899999879999998189986
Q ss_pred CCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 66100-12388510025788732164322358669999758672778998876341035785799995199889873356
Q gi|254780363|r 85 TTHLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGID 163 (264)
Q Consensus 85 S~~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~ 163 (264)
|+||+ ++++||+|.+++ |.|.|++++. ..++++|||||+|||||+||++++...+...+++|+|++|+.+|++|.++
T Consensus 83 S~~l~~~l~~Gd~l~v~~-P~G~F~l~~~-~~~~~vliAgGiGITPilSMl~~l~~~~~~~~v~l~y~~r~~~d~~f~~e 160 (335)
T PRK10684 83 SQWLTRDVKRGDYLWLSD-AMGEFTCDDK-AEDKYLLLAAGCGVTPIMSMRRWLAKNRPQADVQVIFNVRTPQDVIFADE 160 (335)
T ss_pred CHHHHHCCCCCCEEEECC-CCCCCEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHH
T ss_conf 278861678998999757-7455252567-89868999654121569999999996199997899997177100788999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHH
Q ss_conf 689898644577740588438982045444--446567754311047885289988731378999689899999999999
Q gi|254780363|r 164 VMHEISQDEILKDLIGQKLKFYRTVTQEDY--LYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLI 241 (264)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~--~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~ 241 (264)
+..+...+ .+++++...+.++. ...||++. ..+.+.. .+..+..+|+|||++||+++++.|.
T Consensus 161 l~~L~~~~--------~~~~~~~~~~~~~~~~~~~Grl~~----~~l~~~~----pd~~~~~vY~CGP~~~m~a~~~~l~ 224 (335)
T PRK10684 161 WQELKRNY--------PQLNVTLVAENNATEGFIAGRITA----ELLQQVV----PDLASRTVMTCGPAPYMDWVEQEVK 224 (335)
T ss_pred HHHHHHHC--------CCCEEEEEECCCCCCCCCCCCCCH----HHHHHHC----CCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 99999758--------983899995478876521377499----9998548----7722155999798999999999999
Q ss_pred HCCCCCCCCCCCCEEEEEEEE
Q ss_conf 869853156799509999876
Q gi|254780363|r 242 AKKFREGSNSRPGTFVVERAF 262 (264)
Q Consensus 242 ~~G~~~~~~~~~g~~~~E~~~ 262 (264)
++|+.+ .+|++|+|+
T Consensus 225 ~~Gv~~------~~ih~E~F~ 239 (335)
T PRK10684 225 ALGVTA------DRFFKEKFF 239 (335)
T ss_pred HCCCCH------HHEEEEECC
T ss_conf 849988------997975568
No 20
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=100.00 E-value=0 Score=327.25 Aligned_cols=228 Identities=20% Similarity=0.294 Sum_probs=185.5
Q ss_pred CCEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEEC-CCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCC
Q ss_conf 10689888847998699998077--89983997179999843-98588766542285768-8605899994388856610
Q gi|254780363|r 13 YCESVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLMV-NGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHL 88 (264)
Q Consensus 13 ~~~~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~~-~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L 88 (264)
-..+|++++++|+++++|+|..+ ..++|+||||+.|.++. +|..++|+|||+|+|++ +.+++.++++++|.+|++|
T Consensus 2 r~~~V~~v~~~t~~i~~~~l~~~~~~~~~f~pGQ~v~l~~~~~~g~~~~R~ySi~s~p~~~~~~~~~vk~~~~G~~s~~l 81 (235)
T cd06217 2 RVLRVTEIIQETPTVKTFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPYL 81 (235)
T ss_pred EEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHH
T ss_conf 13799999993899599999868999898089801999997579918677773066899998899999989999278899
Q ss_pred C-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 0-123885100257887321643223586699997586727789988763410357857999951998898733566898
Q gi|254780363|r 89 Q-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHE 167 (264)
Q Consensus 89 ~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~ 167 (264)
+ ++++||+|.+++ |.|.|.++.. ..++++|||||||||||+||++++...+...+++|+||+|+.+|++|.+++.++
T Consensus 82 ~~~l~~Gd~v~v~g-P~G~f~~~~~-~~~~~llIAgG~GItP~~s~l~~~~~~~~~~~i~l~~g~r~~~d~~~~~el~~l 159 (235)
T cd06217 82 HDEVKVGDLLEVRG-PIGTFTWNPL-HGDPVVLLAGGSGIVPLMSMIRYRRDLGWPVPFRLLYSARTAEDVIFRDELEQL 159 (235)
T ss_pred HHHCCCCCEEEEEC-CCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 86265997499972-5116422777-898589994587757699999999970999738999725997996669999999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCC-CCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 9864457774058843898204544-444656775431104788528998873137899968989999999999986985
Q gi|254780363|r 168 ISQDEILKDLIGQKLKFYRTVTQED-YLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~s~e~-~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
...+ .++++.+++|++. ..|.|+. +.+....+.+.. .+.+++.+|+|||++|++++.+.|+++|+.
T Consensus 160 ~~~~--------~~~~~~~~~s~~~~~~~~g~~-g~i~~~~l~~~~----~~~~~~~vyiCGP~~m~~~v~~~L~~~Gv~ 226 (235)
T cd06217 160 ARRH--------PNLHVTEALTRAAPADWLGPA-GRITADLIAELV----PPLAGRRVYVCGPPAFVEAATRLLLELGVP 226 (235)
T ss_pred HHHC--------CCEEEEEEECCCCCCCCCCCC-CCCCHHHHHHHC----CCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 9768--------997999997567756656876-762899998537----888897999929999999999999986997
Q ss_pred CCCCCCCCEEEEEEE
Q ss_conf 315679950999987
Q gi|254780363|r 247 EGSNSRPGTFVVERA 261 (264)
Q Consensus 247 ~~~~~~~g~~~~E~~ 261 (264)
+. +|+.|.|
T Consensus 227 ~~------~I~~E~F 235 (235)
T cd06217 227 RD------RIRTEAF 235 (235)
T ss_pred HH------HEEEEEC
T ss_conf 89------9797269
No 21
>PRK13289 nitric oxide dioxygenase; Provisional
Probab=100.00 E-value=0 Score=327.71 Aligned_cols=224 Identities=16% Similarity=0.192 Sum_probs=181.5
Q ss_pred CCCEEEEEEEECCCCEEEEEEECCCC--C-CCCCCCEEEEEEECCCE--EEEEEEEECCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 31068988884799869999807789--9-83997179999843985--8876654228576886058999943888566
Q gi|254780363|r 12 VYCESVISIKHYTDRLFRFCITRPKS--F-RFRSGEFVMLGLMVNGR--RISRAYSMASPCWDDKLEFFSIKVEQGPLTT 86 (264)
Q Consensus 12 ~~~~~V~~v~~~t~~~~~~~l~~~~~--~-~f~~GQ~v~i~~~~~g~--~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~ 86 (264)
.-..+|+++.++++++.+|+|.+.++ + +|+||||+.|++.++|. ..+|+|||||+|+++++++.++++++|.+|+
T Consensus 154 ~r~f~V~~~~~es~~i~sf~l~P~Dg~~l~~f~pGQYisv~~~~p~~~~~~~R~YSLS~aP~~~~~rIsVKr~~gG~vS~ 233 (399)
T PRK13289 154 WRDFRVVKKVPESAEITSFYLEPVDGGPVAEFKPGQYLGVRLDIEGFEYQEIRQYSLSDAPNGKYYRISVKREAGGKVSN 233 (399)
T ss_pred CEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHH
T ss_conf 45789998997489769999981899968998999978999967999755405411378999995799999779981139
Q ss_pred CCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 100-1238851002578873216432235866999975867277899887634103578579999519988987335668
Q gi|254780363|r 87 HLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVM 165 (264)
Q Consensus 87 ~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~ 165 (264)
||| ++++||+|.+++ |.|.|+++.. ..++++|||||||||||+||++++...+..++|+|+||+|+.++++|.+++.
T Consensus 234 ~Lhd~l~vGD~l~vs~-P~G~F~L~~~-~~~plVLIAgGiGITPmlSML~~l~~~~~~r~V~liygaR~~~~~~F~~eL~ 311 (399)
T PRK13289 234 YLHDHVNVGDVLELAA-PAGDFFLDVA-SDTPVVLISGGVGITPMLSMLETLAKQQPTRPVHFIHAAENGDVHAFRDEVR 311 (399)
T ss_pred HHHHCCCCCCEEEEEC-CCEEEEECCC-CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 9983899998899961-6503672687-8886799953767335999999999709998579999569879888899999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCC--------CCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHH
Q ss_conf 98986445777405884389820454444--------4656775431104788528998873137899968989999999
Q gi|254780363|r 166 HEISQDEILKDLIGQKLKFYRTVTQEDYL--------YKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMK 237 (264)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~s~e~~~--------~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~ 237 (264)
.+...+ .++++....|++... ..||++ ...+.+. +...+..+|+|||++||++++
T Consensus 312 ~La~~~--------p~l~~~~~ys~p~~~d~~~~~~~~~Gri~----~~~l~~~-----~~~~d~~~YlCGP~~mm~av~ 374 (399)
T PRK13289 312 ALAARH--------PNLKAHTWYREPTEADRAGGDFDSEGLMD----LEWLEAA-----LPDPDADFYFCGPVPFMQFVA 374 (399)
T ss_pred HHHHHC--------CCCEEEEEECCCCCCCCCCCCCCCCCCCC----HHHHHHH-----CCCCCCEEEEECCHHHHHHHH
T ss_conf 999758--------99489999788871013577767468879----9999850-----899898899968599999999
Q ss_pred HHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 99998698531567995099998
Q gi|254780363|r 238 DLLIAKKFREGSNSRPGTFVVER 260 (264)
Q Consensus 238 ~~L~~~G~~~~~~~~~g~~~~E~ 260 (264)
+.|.++|+.+. +|++|.
T Consensus 375 ~~L~~~GVp~~------~Ih~E~ 391 (399)
T PRK13289 375 KQLLDLGVPEE------RIHYEF 391 (399)
T ss_pred HHHHHCCCCHH------HEEEEC
T ss_conf 99997799789------978833
No 22
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=100.00 E-value=0 Score=327.17 Aligned_cols=219 Identities=18% Similarity=0.296 Sum_probs=177.7
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC-CCCCC
Q ss_conf 98888479986999980778998399717999984398588766542285768-86058999943888566100-12388
Q gi|254780363|r 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ-NIQPG 94 (264)
Q Consensus 17 V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~-~l~~G 94 (264)
|++++++|+++++|+|+++++++|+||||+.|.++. + ..|+|||||+|.+ +.++|+|+++++|.+|++|+ ++++|
T Consensus 1 V~~v~~~t~dv~~l~l~~~~~~~~~pGQ~v~l~~~~-~--~~R~ySias~p~~~~~l~~~Vk~~~~G~~S~~l~~~l~~G 77 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRPLPYLPGQYVNLRRAG-G--LARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEARPG 77 (222)
T ss_pred CEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECC-C--CCEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHCCCCC
T ss_conf 977887589979999976998883899559999889-7--5075242779899987999999975995378998608899
Q ss_pred CEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 51002578873216432235866999975867277899887634103578579999519988987335668989864457
Q gi|254780363|r 95 DTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEIL 174 (264)
Q Consensus 95 d~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~ 174 (264)
|+|.+++ |+|.|.+......++++|||||||||||+||++++...++.++++|+||+|+++|++|.+++..+...+
T Consensus 78 d~v~v~g-P~G~~f~~~~~~~~~ivlIAgG~GitP~~s~l~~~~~~~~~~~i~l~~g~r~~~~l~~~~el~~l~~~~--- 153 (222)
T cd06194 78 HALRLQG-PFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGHQGEIRLVHGARDPDDLYLHPALLWLAREH--- 153 (222)
T ss_pred CEEEEEC-CCCCCEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHC---
T ss_conf 9999981-789831457778873899974767550999999999839997599999839989943099999999878---
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77405884389820454444465677543110478852899887313789996898999999999998698531567995
Q gi|254780363|r 175 KDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPG 254 (264)
Q Consensus 175 ~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g 254 (264)
.+++++++++++...+.+.. .+.+...+ ..++.++.+|+||||+|++++++.|.++|+.+.
T Consensus 154 -----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~yiCGP~~m~~a~~~~L~~~Gv~~~------ 214 (222)
T cd06194 154 -----PNFRYIPCVSEGSQGDPRVR-----AGRIAAHL---PPLTRDDVVYLCGAPSMVNAVRRRAFLAGAPMK------ 214 (222)
T ss_pred -----CCEEEEEEECCCCCCCCCCC-----HHHHHHHC---CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH------
T ss_conf -----99499999887877777652-----55587656---688899899991999999999999998699789------
Q ss_pred EEEEEEE
Q ss_conf 0999987
Q gi|254780363|r 255 TFVVERA 261 (264)
Q Consensus 255 ~~~~E~~ 261 (264)
+|++|+|
T Consensus 215 ~I~~E~F 221 (222)
T cd06194 215 RIYADPF 221 (222)
T ss_pred HEEEEEC
T ss_conf 7466011
No 23
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=100.00 E-value=1.8e-44 Score=317.11 Aligned_cols=223 Identities=18% Similarity=0.297 Sum_probs=180.5
Q ss_pred EEEEEEEECCCCEEEEEEECCC---CCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCCC
Q ss_conf 6898888479986999980778---998399717999984398588766542285768-860589999438885661001
Q gi|254780363|r 15 ESVISIKHYTDRLFRFCITRPK---SFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQN 90 (264)
Q Consensus 15 ~~V~~v~~~t~~~~~~~l~~~~---~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~~ 90 (264)
.+|++++++|+++++|++..+. .+.|+||||++|+++.+|+.+.|+||++|+|.+ +.++|+++++++|.+|+||++
T Consensus 1 ~~lv~~~~~t~d~~~~~f~~~~~~~~~~~~~GQ~v~l~~~~~g~~~~R~YS~~s~~~~~~~~~~~Vk~~~~G~~s~~L~~ 80 (234)
T cd06183 1 FKLVSKEDISHDTRIFRFELPSPDQVLGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHS 80 (234)
T ss_pred CEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCHHHHC
T ss_conf 98789998589928999981898646798999789998341994899767889779999989999999809997223532
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 23885100257887321643223586699997586727789988763410-35785799995199889873356689898
Q gi|254780363|r 91 IQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTY-EKFDEVIVTQTCRQVVELQYGIDVMHEIS 169 (264)
Q Consensus 91 l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~-~~~~~i~L~~g~R~~~dl~y~~~l~~~~~ 169 (264)
+++||+|.+++ |.|.|.+......++++|||||||||||+||+++.... +...+|+|+||+|+++|++|.+++..+..
T Consensus 81 ~~~Gd~l~v~g-P~G~f~~~~~~~~~~lvliagG~GItP~~s~l~~~~~~~~~~~~v~l~~~~r~~~~~~~~~el~~~~~ 159 (234)
T cd06183 81 LKPGDTVEIRG-PFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILLREELDELAK 159 (234)
T ss_pred CCCCCEEEEEC-CCCCEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 89999999877-80536767777786599997460562899999999867887873899993387788778999999997
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHH-HHHHHHHHCCCCCC
Q ss_conf 64457774058843898204544444656775431104788528998873137899968989999-99999998698531
Q gi|254780363|r 170 QDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIV-DMKDLLIAKKFREG 248 (264)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~-~v~~~L~~~G~~~~ 248 (264)
. ...||++..++|+++..|.|+. +++....+.+.+ .....++.++|+|||++||+ ++++.|.++|+.+.
T Consensus 160 ~-------~~~~~~~~~~~s~~~~~~~~~~-g~v~~~~l~~~~--~~~~~~~~~vyvCGP~~m~~~a~~~~L~~~G~~~~ 229 (234)
T cd06183 160 K-------HPDRFKVHYVLSRPPEGWKGGV-GFITKEMIKEHL--PPPPSEDTLVLVCGPPPMIEGAVKGLLKELGYKKD 229 (234)
T ss_pred H-------CCCCEEEEEEECCCCCCCCCCC-CCCCHHHHHHHC--CCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCHH
T ss_conf 6-------8898899999867887767645-624799999645--55677885999949999999999999998699889
No 24
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=100.00 E-value=8.4e-45 Score=319.42 Aligned_cols=223 Identities=19% Similarity=0.287 Sum_probs=176.0
Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC-CCCCC
Q ss_conf 98888479986999980778998399717999984398588766542285768-86058999943888566100-12388
Q gi|254780363|r 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ-NIQPG 94 (264)
Q Consensus 17 V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~-~l~~G 94 (264)
|++++++|+++++|+|.++.+++|+||||+.|.++ |....|+|||||+|++ +.++|.|+++++|.+|++|+ ++++|
T Consensus 1 vv~~~~~t~d~~~~~l~~~~~~~f~pGQ~v~l~i~--~~~~~R~ySi~s~p~~~~~l~~~i~~~~~G~~S~~L~~~l~~G 78 (232)
T cd06190 1 LVDVRELTHDVAEFRFALDGPADFLPGQYALLALP--GVEGARAYSMANLANASGEWEFIIKRKPGGAASNALFDNLEPG 78 (232)
T ss_pred CEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEC--CCCEEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHCCCCC
T ss_conf 95799917990999998299886089806999989--9012688886528999987999999943992688998648999
Q ss_pred CEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC--CCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 51002578873216432235866999975867277899887634103--5785799995199889873356689898644
Q gi|254780363|r 95 DTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYE--KFDEVIVTQTCRQVVELQYGIDVMHEISQDE 172 (264)
Q Consensus 95 d~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~--~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~ 172 (264)
|+|.+++ |.|.|+++.. ..++++|||||||||||+||++++...+ ..++++|+||+|+++|++|.+++..+...
T Consensus 79 d~v~v~g-P~G~f~~~~~-~~~~~vliAgG~GItP~~s~l~~~~~~~~~~~~~v~l~~~~r~~~d~~~~~el~~l~~~-- 154 (232)
T cd06190 79 DELELDG-PYGLAYLRPD-EDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCALDELSALVAL-- 154 (232)
T ss_pred CEEEEEE-CCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHH--
T ss_conf 9999995-4567411677-89978999847673359999999997597889729999960998995449999999873--
Q ss_pred HHHHHHCCCCEEEEECCCCCC----CCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCC-CCC
Q ss_conf 577740588438982045444----446567754311047885289988731378999689899999999999869-853
Q gi|254780363|r 173 ILKDLIGQKLKFYRTVTQEDY----LYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKK-FRE 247 (264)
Q Consensus 173 ~~~~~~~~~~~~~~~~s~e~~----~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G-~~~ 247 (264)
..++++.+++|++.. .|.|+. +.+. ..+.+.+ ....++..+|+||||+|++++.+.|.+.| +.+
T Consensus 155 ------~~~~~~~~~~s~~~~~~~~~~~~~~-G~v~-~~~~~~~---~~~~~~~~~yiCGP~~m~~av~~~L~~~G~~p~ 223 (232)
T cd06190 155 ------GARLRVTPAVSDAGSGSAAGWDGPT-GFVH-EVVEATL---GDRLAEFEFYFAGPPPMVDAVQRMLMIEGVVPF 223 (232)
T ss_pred ------CCCEEEEEEECCCCCCCCCCCCCCC-CCHH-HHHHHHC---CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCH
T ss_conf ------8996999998889855555666765-7599-9998665---688789499994999999999999998499988
Q ss_pred CCCCCCCEEEEEEEEE
Q ss_conf 1567995099998763
Q gi|254780363|r 248 GSNSRPGTFVVERAFS 263 (264)
Q Consensus 248 ~~~~~~g~~~~E~~~~ 263 (264)
.+|+.|. |+
T Consensus 224 ------~~I~~E~-Fv 232 (232)
T cd06190 224 ------DQIHFDR-FV 232 (232)
T ss_pred ------HHEEEEE-CC
T ss_conf ------9905653-69
No 25
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.5e-44 Score=317.63 Aligned_cols=213 Identities=23% Similarity=0.392 Sum_probs=173.6
Q ss_pred CEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCC-EEEEEEEEECCCCCCCCEEEEEEEECC-CCCCCCCCCC
Q ss_conf 06898888479986999980778998399717999984398-588766542285768860589999438-8856610012
Q gi|254780363|r 14 CESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNG-RRISRAYSMASPCWDDKLEFFSIKVEQ-GPLTTHLQNI 91 (264)
Q Consensus 14 ~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g-~~~~R~YSiaS~p~~~~le~~i~~v~~-G~~S~~L~~l 91 (264)
..||++++++|+++++|+|..|++++|+||||+.+.++.+| +...|+|||+|+|+++.++|.++++++ |.+|++|+++
T Consensus 2 ~l~v~~i~~~t~dv~~~~l~~p~~~~f~pGQ~v~l~l~~~g~~~~~R~ySi~s~p~~~~l~~~vk~~~~~g~~s~~l~~l 81 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPEDDVLEFVIKSYPDHDGVTEQLGRL 81 (218)
T ss_pred EEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHC
T ss_conf 01999999819891999998698789699966999983499845667873025899980899999878998365899747
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 38851002578873216432235866999975867277899887634103578579999519988987335668989864
Q gi|254780363|r 92 QPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171 (264)
Q Consensus 92 ~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~ 171 (264)
++||+|.+++ |.|.|..+ ++.+|||||||||||+||++++...+...+++|+||+|+++|++|.+++.++
T Consensus 82 ~~Gd~v~v~g-P~G~f~~~-----~~~lliagG~GItP~~sml~~l~~~~~~~~~~l~~~~r~~~d~~~~~el~~~---- 151 (218)
T cd06196 82 QPGDTLLIED-PWGAIEYK-----GPGVFIAGGAGITPFIAILRDLAAKGKLEGNTLIFANKTEKDIILKDELEKM---- 151 (218)
T ss_pred CCCCCEEEEC-CCCCCCCC-----CCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH----
T ss_conf 7999038938-71676327-----8609996575602699999999972998998999968988898899999750----
Q ss_pred HHHHHHHCCCCEEEEECCCCCCC--CCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 45777405884389820454444--4656775431104788528998873137899968989999999999986985315
Q gi|254780363|r 172 EILKDLIGQKLKFYRTVTQEDYL--YKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGS 249 (264)
Q Consensus 172 ~~~~~~~~~~~~~~~~~s~e~~~--~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~ 249 (264)
. ++++..++++++.. +.||++..+ +.+ .+.+.++++|+||||+||+++++.|.++|+.+.
T Consensus 152 ------~--~~~~~~~~s~~~~~~~~~grv~~~~----l~~-----~~~~~~~~vy~CGp~~m~~~~~~~L~~~Gv~~~- 213 (218)
T cd06196 152 ------L--GLKFINVVTDEKDPGYAHGRIDKAF----LKQ-----HVTDFNQHFYVCGPPPMEEAINGALKELGVPED- 213 (218)
T ss_pred ------H--CCCEEEEECCCCCCCCCCCCCCHHH----HHH-----CCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH-
T ss_conf ------0--6878999966898775058317999----961-----289999989994999999999999998699889-
Q ss_pred CCCCCEEEEE
Q ss_conf 6799509999
Q gi|254780363|r 250 NSRPGTFVVE 259 (264)
Q Consensus 250 ~~~~g~~~~E 259 (264)
+|++|
T Consensus 214 -----~I~~E 218 (218)
T cd06196 214 -----SIVFE 218 (218)
T ss_pred -----HEEEC
T ss_conf -----98839
No 26
>PRK05713 hypothetical protein; Provisional
Probab=100.00 E-value=7e-45 Score=319.80 Aligned_cols=218 Identities=18% Similarity=0.277 Sum_probs=177.3
Q ss_pred CCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCCC
Q ss_conf 3106898888479986999980778998399717999984398588766542285768-860589999438885661001
Q gi|254780363|r 12 VYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQN 90 (264)
Q Consensus 12 ~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~~ 90 (264)
.+.++|++++++|+++++|+|.++++++|+||||+.|.++. | ++|+|||||+|++ +.|||+|+++++|.+|+++++
T Consensus 91 ~~~a~v~~i~~lt~dv~~l~l~~~~~~~f~aGQY~~l~~~~-~--~~R~YSiAs~P~~~~~lefhIr~~~~G~~s~~~~~ 167 (312)
T PRK05713 91 GLPARVVALDWLGGDVLRLRLEPERPLRYRAGQHLVLWTAG-G--VARPYSLASLPGEDPFLEFHIDCSRPGAFCDRARQ 167 (312)
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEECC-C--CCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHH
T ss_conf 63259999843789879999758997875899818998489-8--54554677798999748999851389808999975
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 23885100257887321643223586699997586727789988763410357857999951998898733566898986
Q gi|254780363|r 91 IQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQ 170 (264)
Q Consensus 91 l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~ 170 (264)
+++||.|.++++++|+|.++.....++++|||||||||||+||+++....+..++|+|+||+|+++|++|.+++..+...
T Consensus 168 l~~Gd~l~l~~~~g~~~~~~~~~~~rplvliAgGTGiAPi~Sml~~~l~~~~~~~v~l~~g~R~~~dly~~~el~~l~~~ 247 (312)
T PRK05713 168 LQVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQGHQGPIRLLHLARDSAGHYLAEPLAALAGR 247 (312)
T ss_pred CCCCCEEEECCCCCCCEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHCCHHHHHHHHHH
T ss_conf 79999899657867745841577888779997376536789999999970999988999996887992179999999977
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 44577740588438982045444446567754311047885289988731378999689899999999999869853156
Q gi|254780363|r 171 DEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSN 250 (264)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~ 250 (264)
+ .+|++.++.+++.. + .+. . ....+..+.+|+||||+||+++.+.|.+.|+.+.
T Consensus 248 ~--------p~~~~~~~~~~~~~-------~-----~l~-~---~~~~~~~~~aylCGpP~MV~a~~~~L~~~Gv~~~-- 301 (312)
T PRK05713 248 H--------PQLSVELVTAAQLP-------A-----ALA-E---LRLVSRQTMALLCGSPASVERFARRLYLAGVPRN-- 301 (312)
T ss_pred C--------CCCEEEEEECCCCH-------H-----HHH-H---CCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHH--
T ss_conf 8--------99689999678566-------6-----675-1---4687656189991999999999999998699989--
Q ss_pred CCCCEEEEEEEEE
Q ss_conf 7995099998763
Q gi|254780363|r 251 SRPGTFVVERAFS 263 (264)
Q Consensus 251 ~~~g~~~~E~~~~ 263 (264)
+|++|+ |+
T Consensus 302 ----~i~~D~-F~ 309 (312)
T PRK05713 302 ----QLLADV-FV 309 (312)
T ss_pred ----HEEECC-CC
T ss_conf ----968611-37
No 27
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=100.00 E-value=5.6e-45 Score=320.69 Aligned_cols=238 Identities=18% Similarity=0.291 Sum_probs=183.8
Q ss_pred CCCCCCCC-----CCCEEEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEECC-----------------------
Q ss_conf 77443665-----310689888847998699998077--899839971799998439-----------------------
Q gi|254780363|r 4 VSPKLPVN-----VYCESVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLMVN----------------------- 53 (264)
Q Consensus 4 ~~~~~p~~-----~~~~~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~~~----------------------- 53 (264)
..-++|.. .+.++|++.+..++.+..|+|+.| +.++|+||||++|.+|.-
T Consensus 119 m~i~vp~e~~~vk~we~~Vvsn~nvatfIKEl~l~lp~ge~~~fkaG~yiQi~iP~~~~~~~~~di~~~y~~dW~~~~~~ 198 (408)
T PRK05464 119 MKIELPEEIFGVKKWECTVISNDNVATFIKELVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWEKFGLF 198 (408)
T ss_pred CEEECCHHHHCCCCEEEEEEECCCCHHHHHHEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 66874779806663589999756522224336896789974520258779996376314645135537778888754821
Q ss_pred ------CEEEEEEEEECCCCCCC-CEEEEEEE---------ECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCE
Q ss_conf ------85887665422857688-60589999---------438885661001238851002578873216432235866
Q gi|254780363|r 54 ------GRRISRAYSMASPCWDD-KLEFFSIK---------VEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNR 117 (264)
Q Consensus 54 ------g~~~~R~YSiaS~p~~~-~le~~i~~---------v~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~ 117 (264)
++++.|+|||||.|.++ .|.|.|+. ++.|.+|+||++||+||+|.++| |+|.|.+.+ ..++
T Consensus 199 ~~~~~~~e~~~RaYSmAn~p~e~~~i~~niRiatpPp~~~~vppG~~Ssyl~~LK~GD~V~isG-P~G~Ffl~d--s~~~ 275 (408)
T PRK05464 199 RLVSKVDEPTIRAYSMANYPEEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISG-PFGEFFAKD--TDAE 275 (408)
T ss_pred CCCCCCCCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC-CCCCEEECC--CCCC
T ss_conf 1103587465531213578676884899999616998878899722114452389998899977-864427558--9987
Q ss_pred EEEEECCCCHHHHHHHHHH-HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCC
Q ss_conf 9999758672778998876-3410357857999951998898733566898986445777405884389820454--444
Q gi|254780363|r 118 LYLFSTGTGIAPFVSVIRD-PGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE--DYL 194 (264)
Q Consensus 118 lilIAgGtGItP~~sii~~-~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e--~~~ 194 (264)
+||||||||||||+|||.+ +...+..++|+|+||+|+.+|++|.+++..+.+.+ .||+|++++|++ ...
T Consensus 276 mVfIaGGtGmAPlrS~I~~~l~~~~~~R~I~l~yGARs~~DL~y~de~~~La~e~--------pNF~y~~aLS~p~~ed~ 347 (408)
T PRK05464 276 MVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSLREMFYQEDFDQLAAEN--------PNFVWHVALSDPLPEDN 347 (408)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC--------CCCEEEEEECCCCCCCC
T ss_conf 7999358666748999999998608887569999647657623379999999878--------99579999788896668
Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 465677543110478852899887313789996898999999999998698531567995099998
Q gi|254780363|r 195 YKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGTFVVER 260 (264)
Q Consensus 195 ~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~~~~E~ 260 (264)
|.|+ ++.++. .+.+.......++++..+|+||||+|++++.++|.++|+.+ .+|++++
T Consensus 348 W~G~-tGfIh~-vl~~~yL~dh~~ped~e~YlCGPP~Mi~Av~~~L~~lGV~~------E~I~~D~ 405 (408)
T PRK05464 348 WTGY-TGFIHN-VLYENYLKDHPAPEDCEYYMCGPPMMNAAVIKMLKDLGVED------ENILLDD 405 (408)
T ss_pred CCCC-CCCCCH-HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCH------HHEEECC
T ss_conf 8887-376446-99998986378855868999899899999999999869998------9964335
No 28
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=100.00 E-value=1.4e-43 Score=311.10 Aligned_cols=217 Identities=23% Similarity=0.360 Sum_probs=179.5
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCCCCCCCCE
Q ss_conf 8888479986999980778998399717999984398588766542285768-860589999438885661001238851
Q gi|254780363|r 18 ISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQNIQPGDT 96 (264)
Q Consensus 18 ~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~~l~~Gd~ 96 (264)
++++++|+++++|++..+..++|+||||+.|.++.+|...+|+|||+|+|.+ +.++|.++++++|.+|++|+++++||+
T Consensus 1 ~~~~~~t~d~~~~~~~~~~~~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~~~~~~~~~ik~~~~G~~s~~L~~l~~G~~ 80 (223)
T cd00322 1 VATEDVTDDVRLFRLQLPNGFSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDLKPGDE 80 (223)
T ss_pred CCCEECCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCCCCHHHCCCCCCCE
T ss_conf 97247589929999987998885998349999645995657888766269999989999999899985730222799999
Q ss_pred EECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00257887321643223586699997586727789988763410357857999951998898733566898986445777
Q gi|254780363|r 97 ILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKD 176 (264)
Q Consensus 97 i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~ 176 (264)
|.+++ |+|.|.+.. ...++++|||||||||||+||++++...+...+++|+||+|+.+|++|.+++..+...
T Consensus 81 v~v~g-P~G~f~~~~-~~~~~~vliagG~GitP~~s~l~~~~~~~~~~~v~l~~g~r~~~~~~~~~el~~l~~~------ 152 (223)
T cd00322 81 VEVSG-PGGDFFLPL-EESGPVVLIAGGIGITPFRSMLRHLAADKPGGEITLLYGARTPADLLFLDELEELAKE------ 152 (223)
T ss_pred EEEEE-CCCCCCCCC-CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH------
T ss_conf 99993-776532146-7998789997786614699999999974888863998624897896789999999975------
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 405884389820454444465677543110478852899887313789996898999999999998698531
Q gi|254780363|r 177 LIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREG 248 (264)
Q Consensus 177 ~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~ 248 (264)
..++++.++++++...+.+........ .... ....+..++.+|+|||++|++++++.|.++|+.+.
T Consensus 153 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~yiCGP~~m~~~v~~~l~~~Gv~~~ 218 (223)
T cd00322 153 --GPNFRLVLALSRESEAKLGPGGRIDRE-AEIL---ALLPDDSGALVYICGPPAMAKAVREALVSLGVPEE 218 (223)
T ss_pred --CCCEEEEEEECCCCCCCCCCCCCCHHH-HHHH---HCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH
T ss_conf --899899999877876765666751277-8998---64789899799991999999999999998699889
No 29
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=100.00 E-value=2.2e-43 Score=309.78 Aligned_cols=224 Identities=25% Similarity=0.394 Sum_probs=177.4
Q ss_pred CCCCCCEEEEEEEECCCCEEEEEEECCCCCC--CCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECC-CCCC
Q ss_conf 6653106898888479986999980778998--399717999984398588766542285768860589999438-8856
Q gi|254780363|r 9 PVNVYCESVISIKHYTDRLFRFCITRPKSFR--FRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQ-GPLT 85 (264)
Q Consensus 9 p~~~~~~~V~~v~~~t~~~~~~~l~~~~~~~--f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~-G~~S 85 (264)
...+...+|+++++||+++++|+|.++.+++ |+||||+.|.++.+|+++.|+|||||+|++++.++.++|+++ |.+|
T Consensus 2 ~~~~~~~~V~~v~~~t~di~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S 81 (266)
T COG1018 2 SAGFRRVTVTSVEPETDDVFSFTLEPPDGLRLDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGS 81 (266)
T ss_pred CCCEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCC
T ss_conf 98538899999998228679999974888755257997389986559943788888337999983499999973899746
Q ss_pred CCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 6100-123885100257887321643223586699997586727789988763410357857999951998898733566
Q gi|254780363|r 86 THLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDV 164 (264)
Q Consensus 86 ~~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l 164 (264)
+||| ++|+||+|.+++ |.|+|.++...+ .+++|||||||||||+||++++...++ .+++|+|++|+.++++|.++
T Consensus 82 ~~Lh~~lk~Gd~l~v~~-P~G~F~l~~~~~-~~~llla~G~GITP~lSml~~~~~~~~-~~v~l~h~~R~~~~~af~de- 157 (266)
T COG1018 82 NWLHDHLKVGDTLEVSA-PAGDFVLDDLPE-RKLLLLAGGIGITPFLSMLRTLLDRGP-ADVVLVHAARTPADLAFRDE- 157 (266)
T ss_pred HHHHHCCCCCCEEEEEC-CCCCCCCCCCCC-CCEEEEECCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHCCHHHH-
T ss_conf 78884599999999966-887763688888-848999635368899999999997388-87899980487576111217-
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 89898644577740588438982045444446567754311047885289988731378999689899999999999869
Q gi|254780363|r 165 MHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKK 244 (264)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G 244 (264)
.......+ .........+ .....|++ ....+. ....+....+|+|||.+||+++...|.++|
T Consensus 158 ~~l~~~~~-------~~~~~~~~~~--~~~~~g~~----~~~~l~-----~~~~~~~r~~y~CGp~~fm~av~~~l~~~g 219 (266)
T COG1018 158 LELAAELP-------NALLLGLYTE--RGKLQGRI----DVSRLL-----SAAPDGGREVYLCGPGPFMQAVRLALEALG 219 (266)
T ss_pred HHHHHHCC-------CCCEEEEEEE--CCCCCCEE----EHHHHH-----CCCCCCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 99996387-------7613689985--37736454----287763-----537888877999798999999999999759
Q ss_pred CCCCCCCCCCEEEEEE
Q ss_conf 8531567995099998
Q gi|254780363|r 245 FREGSNSRPGTFVVER 260 (264)
Q Consensus 245 ~~~~~~~~~g~~~~E~ 260 (264)
+... +++.|.
T Consensus 220 ~~~~------~vh~E~ 229 (266)
T COG1018 220 VPDD------RVHLEG 229 (266)
T ss_pred CCCC------CEEECC
T ss_conf 9801------488802
No 30
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit; InterPro: IPR011884 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , . Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . .
Probab=100.00 E-value=3.4e-44 Score=315.32 Aligned_cols=231 Identities=20% Similarity=0.337 Sum_probs=196.3
Q ss_pred CCEEEEEEEECCCCEEEEEEECCCC----CCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 1068988884799869999807789----983997179999843985887665422857688605899994388856610
Q gi|254780363|r 13 YCESVISIKHYTDRLFRFCITRPKS----FRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHL 88 (264)
Q Consensus 13 ~~~~V~~v~~~t~~~~~~~l~~~~~----~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L 88 (264)
..+||-+|+++|++-.+++++.|+. |.|.||||++|+...+|+.++|+||||+.|..+.|..-++++++|.+|.|+
T Consensus 2 h~L~VA~V~r~t~dAv~i~FevP~eL~~~Y~F~pGQ~l~Lk~~~dG~e~RRSYSIC~~~~~~~~rvAvk~~~GG~FS~wa 81 (371)
T TIGR02160 2 HALTVAEVRRLTADAVEISFEVPEELAEDYRFEPGQHLTLKAEVDGEELRRSYSICDAPAPGEIRVAVKKIEGGLFSTWA 81 (371)
T ss_pred CCCCCHHHHCCCCCCCEEEECCCHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEHHH
T ss_conf 87522132105711606841478357875046889345542000774113022221677989633889972897113211
Q ss_pred C-C-CCCCCEEECCCCCCCCCCCCCCCC-------------CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 0-1-238851002578873216432235-------------866999975867277899887634103578579999519
Q gi|254780363|r 89 Q-N-IQPGDTILLHKKSTGTLVLDALIP-------------GNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCR 153 (264)
Q Consensus 89 ~-~-l~~Gd~i~i~~~p~G~f~~d~~~~-------------~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R 153 (264)
. + +++||+|.|.. |.|.|+.+...+ .+++|+||+|||||||+||++.-.+.++..+++|+||||
T Consensus 82 ~d~Gir~GdtlEVM~-P~G~F~~~~~~~~lndaetiaqeaG~~hyvavAAGSGITP~lai~~tvLa~~p~S~ftLvY~Nr 160 (371)
T TIGR02160 82 NDEGIRAGDTLEVMA-PQGRFTSKLDAERLNDAETIAQEAGAGHYVAVAAGSGITPILAIAKTVLAAEPKSTFTLVYGNR 160 (371)
T ss_pred HCCCCCCCCEEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 118704488788716-7897788887220002568888606896899981787058999999874069952089996178
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC---CCCCCCCCCCCCCCHHHHHCCCCCCCHHC-CEEEEECC
Q ss_conf 988987335668989864457774058843898204544---44465677543110478852899887313-78999689
Q gi|254780363|r 154 QVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED---YLYKGRITNHILSGEFYRNMDLSPLNPDT-DRIMICGS 229 (264)
Q Consensus 154 ~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~---~~~~grit~~i~~g~l~~~~~~~~~~~~~-~~vyiCGp 229 (264)
..++++|.++|.. +|+.+..+|+..+++|||. .-.+|||. .++|.. +.-.-++-+. ++.|||||
T Consensus 161 ~~~~vMFa~~L~D-------LKd~yp~Rf~l~~vlSrE~~~~~ll~GRlD----~ekl~~-L~~~li~~~~~deaFlCGP 228 (371)
T TIGR02160 161 RSASVMFAEELAD-------LKDKYPQRFALLHVLSREEREAPLLSGRLD----GEKLRA-LLDSLIDVDEVDEAFLCGP 228 (371)
T ss_pred CCCCHHHHHHHHH-------HHCCHHHHHHHHHHHCCCCCCCCCCCCCCC----HHHHHH-HHHHHCCHHHCCEEEECCC
T ss_conf 8872778998987-------631204578998663121113641024227----899998-8532002100240011185
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
Q ss_conf 899999999999869853156799509999876
Q gi|254780363|r 230 PTMIVDMKDLLIAKKFREGSNSRPGTFVVERAF 262 (264)
Q Consensus 230 p~Mi~~v~~~L~~~G~~~~~~~~~g~~~~E~~~ 262 (264)
..||+++.+.|..+|+.. ++|+.|+|-
T Consensus 229 ~~mv~~~~~~L~a~G~~~------~~vh~E~F~ 255 (371)
T TIGR02160 229 AAMVDDAEDALKALGVPS------ERVHLELFT 255 (371)
T ss_pred HHHHHHHHHHHHHCCCCC------CCEEEEECC
T ss_conf 899999999997268962------254587504
No 31
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=100.00 E-value=1.6e-42 Score=304.13 Aligned_cols=209 Identities=16% Similarity=0.216 Sum_probs=166.1
Q ss_pred EECCCCEEEEEEECCC-CCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC-CCCCCCEE
Q ss_conf 8479986999980778-998399717999984398588766542285768-86058999943888566100-12388510
Q gi|254780363|r 21 KHYTDRLFRFCITRPK-SFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ-NIQPGDTI 97 (264)
Q Consensus 21 ~~~t~~~~~~~l~~~~-~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~-~l~~Gd~i 97 (264)
..+|+|+.+|+|.++. .++|+||||+.|.++.+|....|+|||||+|.+ +.++|+|+.+ |.+|++|+ ++++||+|
T Consensus 3 ~~et~d~~t~~l~p~~~~~~f~pGQ~v~l~~~~~g~~~~r~ySias~p~~~~~l~l~Ik~~--G~~S~~l~~~l~~Gd~v 80 (216)
T cd06198 3 VTEVRPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKAL--GDYTRRLAERLKPGTRV 80 (216)
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEEEEC--CCCHHHHHHCCCCCCEE
T ss_conf 6667980899998699888929998189997579928887688213899999799999972--75124487559999999
Q ss_pred ECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02578873216432235866999975867277899887634103578579999519988987335668989864457774
Q gi|254780363|r 98 LLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDL 177 (264)
Q Consensus 98 ~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~ 177 (264)
.+++ |.|.|+++. +.+++||||||||||||+||++++...+..++++|+||+|+.+|++|.+++..+...
T Consensus 81 ~i~g-P~G~f~l~~--~~~~~vliAgGtGIaP~~sml~~l~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~------- 150 (216)
T cd06198 81 TVEG-PYGRFTFDD--RRARQIWIAGGIGITPFLALLEALAARGDARPVTLFYCVRDPEDAVFLDELRALAAA------- 150 (216)
T ss_pred EEEC-CCCCCCCCC--CCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH-------
T ss_conf 9962-556871247--899889997576777099999999975999848999946997896889999999976-------
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 05884389820454444465677543110478852899887313789996898999999999998698531567995099
Q gi|254780363|r 178 IGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGTFV 257 (264)
Q Consensus 178 ~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~~~ 257 (264)
. ++.+....+++ ..|.+. ..+... ...++.++.+|+||||+|++++++.|+++|+.+. +|+
T Consensus 151 ~--~~~~~~~~~~~-~~~~~~-------~~~~~~---~~~d~~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~------~I~ 211 (216)
T cd06198 151 A--GVVLHVIDSPS-DGRLTL-------EQLVRA---LVPDLADADVWFCGPPGMADALEKGLRALGVPAR------RFH 211 (216)
T ss_pred C--CCEEEEEECCC-CCCCCH-------HHHHHH---CCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHH------HEE
T ss_conf 5--97899960798-776777-------789874---3788689499994989999999999998699789------879
Q ss_pred EEE
Q ss_conf 998
Q gi|254780363|r 258 VER 260 (264)
Q Consensus 258 ~E~ 260 (264)
.|.
T Consensus 212 ~E~ 214 (216)
T cd06198 212 YER 214 (216)
T ss_pred EEE
T ss_conf 702
No 32
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=100.00 E-value=1.9e-41 Score=296.89 Aligned_cols=209 Identities=24% Similarity=0.398 Sum_probs=165.5
Q ss_pred EEEEEECCCCEEEEEEECC----CCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCCCC
Q ss_conf 9888847998699998077----8998399717999984398588766542285768-8605899994388856610012
Q gi|254780363|r 17 VISIKHYTDRLFRFCITRP----KSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQNI 91 (264)
Q Consensus 17 V~~v~~~t~~~~~~~l~~~----~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~~l 91 (264)
|++|+++|+++.+|+|..+ ..++|+||||++|.++..++ |+|||+|+|.+ +.++|.++++ |.+|++|+++
T Consensus 1 v~~i~~et~~v~~~~l~~~~~~~~~~~f~pGQfv~l~v~~~~~---~p~Si~s~~~~~~~l~i~vk~~--G~~T~~L~~l 75 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPGVGE---APISISSDPTRRGPLELTIRRV--GRVTEALHEL 75 (253)
T ss_pred CEEEEECCCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCE---EEEEEECCCCCCCEEEEEEEEE--CCCCHHHHCC
T ss_conf 9699977999699999947988778895989559999799998---9898744889999899999996--7865333238
Q ss_pred CCCCEEECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 388510025788732-1643223586699997586727789988763410-35785799995199889873356689898
Q gi|254780363|r 92 QPGDTILLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTY-EKFDEVIVTQTCRQVVELQYGIDVMHEIS 169 (264)
Q Consensus 92 ~~Gd~i~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~-~~~~~i~L~~g~R~~~dl~y~~~l~~~~~ 169 (264)
++||+|.+++ |.|. |.++.. +.++++|||||+||||++||++++... .+.++++|+||+|+++|++|.+++..+..
T Consensus 76 ~~Gd~l~v~G-P~G~~F~~~~~-~~~~~lliagG~GiaPl~s~~~~l~~~~~~~~~v~l~~g~r~~~~~~~~del~~l~~ 153 (253)
T cd06221 76 KPGDTVGLRG-PFGNGFPVEEM-KGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFKEELKEWAK 153 (253)
T ss_pred CCCCEEEEEC-CCCCCCCCCCC-CCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHCCHHHHHHHHH
T ss_conf 9999999970-67887637646-897689995462566689999999972666775799996398798120999999871
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 644577740588438982045444446567754311047885289988731378999689899999999999869853
Q gi|254780363|r 170 QDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264)
. .+++++.++++++..|.|+. |.+.+.+.....+++++.+|+|||++||+++.+.|.++|+..
T Consensus 154 ~---------~~~~~~~~~~~~~~~~~G~~------G~vt~~l~~~~~~~~~~~vy~CGP~pMm~av~~~l~~~GVp~ 216 (253)
T cd06221 154 R---------SDVEVILTVDRAEEGWTGNV------GLVTDLLPELTLDPDNTVAIVCGPPIMMRFVAKELLKLGVPE 216 (253)
T ss_pred C---------CCCEEEEEEECCCCCCCCCC------CCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCH
T ss_conf 4---------79799999978987758766------858899987377868859999399999999999999849980
No 33
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=100.00 E-value=1.4e-41 Score=297.72 Aligned_cols=205 Identities=19% Similarity=0.330 Sum_probs=159.7
Q ss_pred EEEEECCCCEEEEEEECCCCC---CCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCC-CCCCCC-CC
Q ss_conf 888847998699998077899---8399717999984398588766542285768-86058999943888-566100-12
Q gi|254780363|r 18 ISIKHYTDRLFRFCITRPKSF---RFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGP-LTTHLQ-NI 91 (264)
Q Consensus 18 ~~v~~~t~~~~~~~l~~~~~~---~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~-~S~~L~-~l 91 (264)
|+|+++|+++.+|+|+++++. .|+||||+.|.++. + .+|+|||||+|.+ +.+|+.++++++|+ .|+||+ ++
T Consensus 1 V~i~~et~dv~sf~l~~~~~~~~~~f~pGQ~v~l~~~~-~--~~R~YSias~p~~~~~~~i~Vk~~~~g~ggS~~l~~~l 77 (211)
T cd06185 1 VRIRDEAPDIRSFELEAPDGAPLPAFEPGAHIDVHLPN-G--LVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELL 77 (211)
T ss_pred CEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEECCC-C--CEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHC
T ss_conf 95798699909999980998837885999889998599-8--67998568798999879999996269962669998304
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 38851002578873216432235866999975867277899887634103578579999519988987335668989864
Q gi|254780363|r 92 QPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171 (264)
Q Consensus 92 ~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~ 171 (264)
++||+|.+++ |+|.|.+++ ..+++||||||||||||+||++++...+ .+++|+||+|+++|++|.+++.++.
T Consensus 78 ~~Gd~v~v~g-P~G~F~l~~--~~~~~vliAgG~GItP~~sml~~l~~~~--~~~~L~y~~r~~~d~~f~~eL~~l~--- 149 (211)
T cd06185 78 RVGDELEVSA-PRNLFPLDE--AARRHLLIAGGIGITPILSMARALAARG--ADFELHYAGRSREDAAFLDELAALP--- 149 (211)
T ss_pred CCCCEEEEEC-CCCEEEECC--CCCCEEEEECCCCCCHHHHHHHHHHHCC--CCEEEEEEECCHHHHHHHHHHHHHC---
T ss_conf 6998899973-554278368--8885799963776375999999999769--9799999838879925799997550---
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 45777405884389820454444465677543110478852899887313789996898999999999998698531567
Q gi|254780363|r 172 EILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNS 251 (264)
Q Consensus 172 ~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~ 251 (264)
..++++.. +.+ .+|. .+.+.+. . .+.++++|+|||++||+++.+.|.++|+.+.
T Consensus 150 -------~~~~~~~~--~~~----~~r~-------~~~~~l~--~-~~~~~~vy~CGP~~m~~a~~~~L~~~Gv~~~--- 203 (211)
T cd06185 150 -------GDRVHLHF--DDE----GGRL-------DLAALLA--A-PPAGTHVYVCGPEGMMDAVRAAAAALGWPEA--- 203 (211)
T ss_pred -------CCCEEEEE--CCC----CCCC-------CHHHHHH--C-CCCCCEEEEECCHHHHHHHHHHHHHCCCCHH---
T ss_conf -------59869999--999----8745-------9999940--5-8999789990989999999999998699889---
Q ss_pred CCCEEEEEEEEE
Q ss_conf 995099998763
Q gi|254780363|r 252 RPGTFVVERAFS 263 (264)
Q Consensus 252 ~~g~~~~E~~~~ 263 (264)
+|+.|. |+
T Consensus 204 ---~Ih~E~-Fa 211 (211)
T cd06185 204 ---RLHFER-FA 211 (211)
T ss_pred ---HEEEEE-CC
T ss_conf ---958652-88
No 34
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=100.00 E-value=1e-36 Score=265.26 Aligned_cols=231 Identities=15% Similarity=0.225 Sum_probs=170.0
Q ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEECC---CCCCCCCCCEEEEEEEC---CC--EEEEEEEEECCCCCC-CCEEEEEE
Q ss_conf 43665310689888847998699998077---89983997179999843---98--588766542285768-86058999
Q gi|254780363|r 7 KLPVNVYCESVISIKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLMV---NG--RRISRAYSMASPCWD-DKLEFFSI 77 (264)
Q Consensus 7 ~~p~~~~~~~V~~v~~~t~~~~~~~l~~~---~~~~f~~GQ~v~i~~~~---~g--~~~~R~YSiaS~p~~-~~le~~i~ 77 (264)
..|..+...++++.+.+|+++.+|++..| ..+-...|||+.++... +| +.+.|+||+.|..++ ++++++|+
T Consensus 30 L~p~~w~~~~L~~k~~vShdT~~frF~Lp~~~~~LGLPvGqHi~l~~~~~~~~g~~e~V~R~YTPiS~~~~~G~~dllIK 109 (303)
T PTZ00319 30 LDPTMFQHFKLVKKTEVTHDSFIFRFALHNETQRLGLPIGQHIVLRADCTTPFGKPETVQHSYTPISSDDDKGYVDFLIK 109 (303)
T ss_pred CCCCCCEECEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCCCEEEEEEE
T ss_conf 48876155557877781798447998788986537997111699963204788874155304678877777765999999
Q ss_pred EE---------CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--------------CCCCEEEEEECCCCHHHHHHHH
Q ss_conf 94---------388856610012388510025788732164322--------------3586699997586727789988
Q gi|254780363|r 78 KV---------EQGPLTTHLQNIQPGDTILLHKKSTGTLVLDAL--------------IPGNRLYLFSTGTGIAPFVSVI 134 (264)
Q Consensus 78 ~v---------~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~--------------~~~~~lilIAgGtGItP~~sii 134 (264)
.+ ++|++|++|++|++||+|.+.| |.|.|.+..- ...+++.|||||||||||++++
T Consensus 110 iY~~~~~p~fP~GGkmS~~L~~L~iGd~v~~kG-P~G~~~Y~~ng~~~i~~~~~~~~~~~~~~i~MIaGGtGITPm~Qii 188 (303)
T PTZ00319 110 VYFKGVHPSFPNGGRLSQHLYHLKLGEKVEMRG-PVGKFEYLGNGTYTVKKGKGGLKTMHVDAFAMVAGGTGITPMMQII 188 (303)
T ss_pred EECCCCCCCCCCCCHHHHHHHCCCCCCEEEEEC-CCCCEEECCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
T ss_conf 832788888898881767863799989999977-8423078179726750465542000111367872587779299999
Q ss_pred HHHHHH-CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCCCCCCCCCCCCCHHHHHC
Q ss_conf 763410-357857999951998898733566898986445777405884389820454-444465677543110478852
Q gi|254780363|r 135 RDPGTY-EKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE-DYLYKGRITNHILSGEFYRNM 212 (264)
Q Consensus 135 ~~~~~~-~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e-~~~~~grit~~i~~g~l~~~~ 212 (264)
|..... +...+++|+||+|+++|+++++++.++.. ..+|+...++|++ +..|.|.+ +++...-+++.+
T Consensus 189 r~Il~~p~D~Tkv~Lly~N~te~DILlr~ELd~~~~---------~~rfkv~yvLs~~~~~~W~g~~-G~I~~eml~~~l 258 (303)
T PTZ00319 189 HAIKKNKEDPTKVFLVYGNQTERDILLRKELDEAAK---------DPRFKVWYTLDREATPEWKYGT-GYVDEEMLRAHL 258 (303)
T ss_pred HHHHCCCCCCCEEEEEEECCCHHHCCHHHHHHHHHH---------CCCCEEEEEECCCCCCCCCCCC-CEECHHHHHHHC
T ss_conf 999729999827999993298798737999998852---------5781599997679999888664-267899999768
Q ss_pred CCCCC---CHHCCEEEEECCHHHHH-HHHHHHHHCCCCCC
Q ss_conf 89988---73137899968989999-99999998698531
Q gi|254780363|r 213 DLSPL---NPDTDRIMICGSPTMIV-DMKDLLIAKKFREG 248 (264)
Q Consensus 213 ~~~~~---~~~~~~vyiCGpp~Mi~-~v~~~L~~~G~~~~ 248 (264)
-.+.. ..++..+++||||+|++ +++..|+++||++.
T Consensus 259 p~p~~~~~~~~~~~vlvCGPPpMi~~a~~~~L~~LGy~~e 298 (303)
T PTZ00319 259 PVPDPQNSGIKKVMALMCGPPPMLQMAVKPNLERIGYTAD 298 (303)
T ss_pred CCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCHH
T ss_conf 8988555666776999939849999999999998399889
No 35
>KOG0534 consensus
Probab=100.00 E-value=5.1e-36 Score=260.63 Aligned_cols=226 Identities=19% Similarity=0.321 Sum_probs=178.4
Q ss_pred CCCCEEEEEEEECCCCE--EEEEEE-CCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCC
Q ss_conf 53106898888479986--999980-778998399717999984398588766542285768-86058999943888566
Q gi|254780363|r 11 NVYCESVISIKHYTDRL--FRFCIT-RPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTT 86 (264)
Q Consensus 11 ~~~~~~V~~v~~~t~~~--~~~~l~-~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~ 86 (264)
..+..++++.+..|+++ |+|.|. .+..+....|||+.+.++++|+.+.|+||+.|.+.+ ++++++++..++|.+|.
T Consensus 50 ~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS~ 129 (286)
T KOG0534 50 SYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMSQ 129 (286)
T ss_pred CEEEEEEEEEEECCCCCEEEEEECCCCHHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCH
T ss_conf 16888878887136775137971698501327655258999962898689970687467134650899999526886537
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC-CCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 1001238851002578873216432235866999975867277899887634103-578579999519988987335668
Q gi|254780363|r 87 HLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYE-KFDEVIVTQTCRQVVELQYGIDVM 165 (264)
Q Consensus 87 ~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~-~~~~i~L~~g~R~~~dl~y~~~l~ 165 (264)
||++|++||+|.++| |.|.|.++. .+.++|.|||||||||||++++|+..... ...+|+|+|++++++|+++++++.
T Consensus 130 ~l~~LkiGd~ve~rG-P~G~~~~~~-~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N~te~DILlr~eL~ 207 (286)
T KOG0534 130 HLDSLKIGDTVEFRG-PIGEFKYDP-QKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYANKTEDDILLREELE 207 (286)
T ss_pred HHHCCCCCCEEEEEC-CCCCEEECC-CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHH
T ss_conf 886599999899966-843357679-886458999345564169999999736987776899999517865541689999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHH-HHHHHHHHCC
Q ss_conf 989864457774058843898204544444656775431104788528998873137899968989999-9999999869
Q gi|254780363|r 166 HEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIV-DMKDLLIAKK 244 (264)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~-~v~~~L~~~G 244 (264)
.+...+ ..+|....++++++..|.+-+ +++..+.+.+.+... ..+..+++|||||+|++ ++...|.++|
T Consensus 208 ~la~~~-------p~rf~~~y~v~~~~~~w~~~~-g~It~~~i~~~l~~~--~~~~~~~liCGPp~m~~~~~~~~le~Lg 277 (286)
T KOG0534 208 ELASKY-------PERFKVWYVVDQPPEIWDGSV-GFITKDLIKEHLPPP--KEGETLVLICGPPPMINGAAQGNLEKLG 277 (286)
T ss_pred HHHHHC-------CCEEEEEEEECCCCCCCCCCC-CCCCHHHHHHHCCCC--CCCCEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 986518-------101899999747721355766-743889998658898--8787599997997897678888898669
Q ss_pred CCCC
Q ss_conf 8531
Q gi|254780363|r 245 FREG 248 (264)
Q Consensus 245 ~~~~ 248 (264)
+++.
T Consensus 278 ~~~~ 281 (286)
T KOG0534 278 YNED 281 (286)
T ss_pred CCHH
T ss_conf 9946
No 36
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=100.00 E-value=1.1e-35 Score=258.42 Aligned_cols=227 Identities=22% Similarity=0.366 Sum_probs=172.4
Q ss_pred CCCCCCCCCEEEEEEEECCCCEEEEEE--ECC---CCCCCCCCCEEEEEEECCCEEEEEEEEECCCCC-CCCEEEEEEEE
Q ss_conf 443665310689888847998699998--077---899839971799998439858876654228576-88605899994
Q gi|254780363|r 6 PKLPVNVYCESVISIKHYTDRLFRFCI--TRP---KSFRFRSGEFVMLGLMVNGRRISRAYSMASPCW-DDKLEFFSIKV 79 (264)
Q Consensus 6 ~~~p~~~~~~~V~~v~~~t~~~~~~~l--~~~---~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~-~~~le~~i~~v 79 (264)
...|+.++.++|++++++|+++++|++ ..| +.|.|+||||++|.++..|+ +|+||+|++. ++.++|++++|
T Consensus 2 ~~~~~~p~~~~i~~~~~~t~~~~~f~l~~~~p~ia~~f~~~PGQFv~v~v~g~ge---~PiSi~~~~~~~g~l~~~~r~v 78 (292)
T PRK08345 2 NDNPYALYRAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGE---VPISICSSPTRKGFFELCIRRA 78 (292)
T ss_pred CCCCCCCCEEEEEEEHHCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCC---CCEEEECCCCCCCEEEEEEEEE
T ss_conf 9985568206999843249870599999627120345860899859999689996---1058715688899899999821
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHH
Q ss_conf 388856610012388510025788732-1643223586699997586727789988763410-35785799995199889
Q gi|254780363|r 80 EQGPLTTHLQNIQPGDTILLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTY-EKFDEVIVTQTCRQVVE 157 (264)
Q Consensus 80 ~~G~~S~~L~~l~~Gd~i~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~-~~~~~i~L~~g~R~~~d 157 (264)
|..|.+|+++++||.|.+.| |.|. |.++.. ++++++|||||+|+||+++++++.... .+..+++++||+|+.+|
T Consensus 79 --G~~T~~L~~lk~Gd~l~v~G-PlG~gf~~~~~-~~~~v~lVaGGiGiaPl~~~~~~~l~~~~~~~~v~~i~GaR~~~d 154 (292)
T PRK08345 79 --GRVTTVVHRLKEGDIVGVRG-PYGNGFPVDEM-EGMDLLLIAGGLGMAPLRSVLLYAMDNRGKYGNITLIYGAKYYED 154 (292)
T ss_pred --CHHHHHHHCCCCCCEEEEEE-CCCCCEECCCC-CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHH
T ss_conf --86999996289999999972-35786304102-695199994254545138999999872155686699997188798
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC--CCCCCCCCCC---CCCHHHHHCCCCCCCHHCCEEEEECCHHH
Q ss_conf 873356689898644577740588438982045444--4465677543---11047885289988731378999689899
Q gi|254780363|r 158 LQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDY--LYKGRITNHI---LSGEFYRNMDLSPLNPDTDRIMICGSPTM 232 (264)
Q Consensus 158 l~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~--~~~grit~~i---~~g~l~~~~~~~~~~~~~~~vyiCGpp~M 232 (264)
++|.+++..+....+ ++.....++.+++ .+.|++++.+ ..|.+.+.+.....+++++.+|+|||++|
T Consensus 155 llf~~E~~~~~~~~~--------~~~~~~~~~~dd~~~g~~g~~~~~~~~~~~g~v~~~l~~~~~~~~~~~v~~CGP~~M 226 (292)
T PRK08345 155 LLFYDELIKDLAEAE--------NVKIIQSVTRDPEWPGCHGLPQGFIEKVCKGVVTDLFREANTDPKNTYAAICGPPVM 226 (292)
T ss_pred HHHHHHHHHHHHHCC--------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCHHH
T ss_conf 321898887653203--------441289995179998650540442121223303223334215745609999999999
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999999869853
Q gi|254780363|r 233 IVDMKDLLIAKKFRE 247 (264)
Q Consensus 233 i~~v~~~L~~~G~~~ 247 (264)
|+++.+.+++.|+..
T Consensus 227 mk~v~~~~~~~gi~~ 241 (292)
T PRK08345 227 YKFVFKELINRGYRP 241 (292)
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999999759984
No 37
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=100.00 E-value=8.1e-36 Score=259.29 Aligned_cols=240 Identities=23% Similarity=0.290 Sum_probs=176.8
Q ss_pred CCCCCCCEEEEEEEECCC-----CEEEEEEECCCCCCCCCCCEEEEEEEC----CCEE-EEEEEEECCCCC-----CCCE
Q ss_conf 366531068988884799-----869999807789983997179999843----9858-876654228576-----8860
Q gi|254780363|r 8 LPVNVYCESVISIKHYTD-----RLFRFCITRPKSFRFRSGEFVMLGLMV----NGRR-ISRAYSMASPCW-----DDKL 72 (264)
Q Consensus 8 ~p~~~~~~~V~~v~~~t~-----~~~~~~l~~~~~~~f~~GQ~v~i~~~~----~g~~-~~R~YSiaS~p~-----~~~l 72 (264)
-|..++.+||++..++|. +++.+.+..+-.++|.+||.+-|--|. +|++ ..|.|||||+++ ...+
T Consensus 4 ~~~~P~~~~v~~n~~l~~~~~~~~v~hi~~d~~g~~~y~eGqsigiippg~~~~~g~p~~~RlYSIAS~~~g~~~~~~~~ 83 (286)
T cd06208 4 KPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTL 83 (286)
T ss_pred CCCCCEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCEECCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEE
T ss_conf 89998589998679824899987079999967998766158887888998765579968760578657877777899779
Q ss_pred EEEEEEEC----------CCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf 58999943----------8885661001238851002578873-216432235866999975867277899887634103
Q gi|254780363|r 73 EFFSIKVE----------QGPLTTHLQNIQPGDTILLHKKSTG-TLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYE 141 (264)
Q Consensus 73 e~~i~~v~----------~G~~S~~L~~l~~Gd~i~i~~~p~G-~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~ 141 (264)
.+.++++. .|.+|+||++|++||+|.+.+ |.| +|.+.+ .+..+|||||+|||||||+||+++.....
T Consensus 84 sl~Vrr~~~~~~~~g~~~~GvcS~yL~~lk~Gd~v~v~g-p~g~~F~lP~-d~~~piIMIg~GTGIAPfRsfl~~r~~~~ 161 (286)
T cd06208 84 SLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITG-PVGKTMLLPE-DPNATLIMIATGTGIAPFRSFLRRLFREK 161 (286)
T ss_pred EEEEEEEEEECCCCCCCCCEEECHHHHCCCCCCEEEEEC-CCCCCCCCCC-CCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 999999775358888503316516654389999899980-4478401888-99998799947868465899999999864
Q ss_pred -----CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---CCCCCCCCCHHHHHCC
Q ss_conf -----57857999951998898733566898986445777405884389820454444465---6775431104788528
Q gi|254780363|r 142 -----KFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKG---RITNHILSGEFYRNMD 213 (264)
Q Consensus 142 -----~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~g---rit~~i~~g~l~~~~~ 213 (264)
..++++||||+|+.+|++|.+++..+.... ..++++.+++||++..|.| +|++.+.... .+.
T Consensus 162 ~~~~~~~G~~~LffG~R~~~d~lY~~el~~~~~~~-------~~~~~~~~AfSRe~~~~~g~K~YVQd~l~e~~-~~i-- 231 (286)
T cd06208 162 HADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQY-------PDNFRIDYAFSREQKNADGGKMYVQDRIAEYA-EEI-- 231 (286)
T ss_pred CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHC-------CCCEEEEEEEECCCCCCCCCCCHHHHHHHHHH-HHH--
T ss_conf 43457887689999478732435899999999858-------77644699995788776656222788999979-999--
Q ss_pred CCCCCHHCCEEEEECCHHHHHHHHHHHHHC---CCC--C--CCCCCCCEEEEE
Q ss_conf 998873137899968989999999999986---985--3--156799509999
Q gi|254780363|r 214 LSPLNPDTDRIMICGSPTMIVDMKDLLIAK---KFR--E--GSNSRPGTFVVE 259 (264)
Q Consensus 214 ~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~---G~~--~--~~~~~~g~~~~E 259 (264)
+.-+...++++||||.++|..+|.++|.+. |.. + ...++.|++++|
T Consensus 232 ~~ll~~~~a~vYvCG~k~M~~gV~~aL~~i~~~~~~~~~~~~~lk~~~R~~~e 284 (286)
T cd06208 232 WNLLDKDNTHVYICGLKGMEPGVDDALTSVAEGGLAWEEFWESLKKKGRWHVE 284 (286)
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEE
T ss_conf 99985799699981750158999999999986387999999999877971221
No 38
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=100.00 E-value=6.6e-35 Score=253.17 Aligned_cols=215 Identities=17% Similarity=0.312 Sum_probs=166.4
Q ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 43665310689888847998699998077899839971799998439858876654228576886058999943888566
Q gi|254780363|r 7 KLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTT 86 (264)
Q Consensus 7 ~~p~~~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~ 86 (264)
..|+.+..++|++++++|+++++|++.. .+.++||||+.|.++..|+ ||+||++ .+++.++|++++| |+.|.
T Consensus 2 ~~~~~p~~~~I~~~~~et~~v~t~~~~~--~~~~~PGQFvmv~v~~~ge---~PiSi~~-~~~g~l~l~~~~v--G~gT~ 73 (263)
T PRK08221 2 QNSYLPAASEILDITKHTDIEYTFRMAV--DGDVKPGQFFEVSLPKVGE---APISVSD-IGEGYIDLTIRRV--GKVTD 73 (263)
T ss_pred CCCCCCCCEEEEEEEECCCCEEEEEECC--CCCCCCCCEEEEEECCCCC---CEEEEEC-CCCCEEEEEEEEE--CHHHH
T ss_conf 8875586379999785599639999815--8997999879999589995---1058861-7999699999948--87899
Q ss_pred CCCCCCCCCEEECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 10012388510025788732-1643223586699997586727789988763410-357857999951998898733566
Q gi|254780363|r 87 HLQNIQPGDTILLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTY-EKFDEVIVTQTCRQVVELQYGIDV 164 (264)
Q Consensus 87 ~L~~l~~Gd~i~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~-~~~~~i~L~~g~R~~~dl~y~~~l 164 (264)
+|+++++||.|.+.| |.|. |.++.. +++++++||||+||||++++++++... ....++++++|+|++++++|.+++
T Consensus 74 ~L~~lk~Gd~l~v~G-PlGngF~~~~~-~g~~~llVgGGiGiaPl~~l~~~l~~~~~~~~~v~li~G~rs~~~l~~~~e~ 151 (263)
T PRK08221 74 EIFTLKEGDKVFLRG-PYGNGFPVDTY-KGKELIVVAGGTGVAPVKGLMRYFSENPQEIKSLDLILGFKNPDDILFKEDM 151 (263)
T ss_pred HHHCCCCCCEEEEEE-CCCCCCCCCCC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 997299989999970-14897056414-8933999826632223699999998623036528999956873660179999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 89898644577740588438982045444446567754311047885289988731378999689899999999999869
Q gi|254780363|r 165 MHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKK 244 (264)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G 244 (264)
..+. .+++.+.++.+.+..|.|.+ +.+ ...+. .+... +.++..+|+|||++|++++.+.+.+.|
T Consensus 152 ~~~~-----------~~~~~~~t~D~g~~g~~G~v-G~v-t~~l~-~l~~~--~~~~~~v~~CGP~~Mmk~v~~~~~~~g 215 (263)
T PRK08221 152 ATWR-----------EKINLILTLDEGEEDYRGNV-GLV-TKYIP-ELTLK--DIDNMQVIVVGPPIMMKFTVAEFLKKG 215 (263)
T ss_pred HHHH-----------CCCCEEEEECCCCCCCCCCC-CHH-HHHHH-HHCCC--CCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 9763-----------24559999778988867734-607-78898-74125--657417999899899999999999749
Q ss_pred CCC
Q ss_conf 853
Q gi|254780363|r 245 FRE 247 (264)
Q Consensus 245 ~~~ 247 (264)
+..
T Consensus 216 i~~ 218 (263)
T PRK08221 216 IKE 218 (263)
T ss_pred CCC
T ss_conf 984
No 39
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=100.00 E-value=1.6e-35 Score=257.33 Aligned_cols=234 Identities=18% Similarity=0.310 Sum_probs=171.2
Q ss_pred CCCCCCCCCCCCE-----EEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEE------------------------
Q ss_conf 7774436653106-----89888847998699998077--8998399717999984------------------------
Q gi|254780363|r 3 DVSPKLPVNVYCE-----SVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLM------------------------ 51 (264)
Q Consensus 3 ~~~~~~p~~~~~~-----~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~------------------------ 51 (264)
|..-++|++.|.. +|++-.-...=|+.|.|..| +..+|+||-|++|.+|
T Consensus 115 Dm~i~~~Ee~fgvk~WeC~V~SN~N~ATFIKEL~l~~p~g~~v~FkaGgY~Qi~~P~~~v~y~Dfd~~~~~~Yr~DW~kf 194 (425)
T TIGR01941 115 DMSIEIPEEVFGVKKWECEVISNDNVATFIKELVLKLPDGESVPFKAGGYIQIEVPAHKVKYADFDQTIQPEYRGDWEKF 194 (425)
T ss_pred CCEEEECEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCHHHCCCHHHC
T ss_conf 87787320342311013478777985136789888878888304357864788616723312310110121231663250
Q ss_pred -------CC----CEEEEEEEEECCCCCCCCEEEEEEEE-----------------CCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf -------39----85887665422857688605899994-----------------388856610012388510025788
Q gi|254780363|r 52 -------VN----GRRISRAYSMASPCWDDKLEFFSIKV-----------------EQGPLTTHLQNIQPGDTILLHKKS 103 (264)
Q Consensus 52 -------~~----g~~~~R~YSiaS~p~~~~le~~i~~v-----------------~~G~~S~~L~~l~~Gd~i~i~~~p 103 (264)
.+ .+.+.|+||+||-|.+..+-.+-+|+ |-|.+|+|+++||+||.|.|+| |
T Consensus 195 ~~f~~~~~~~~lpae~~~rAYSmAnYP~E~~~i~lNvRIAtPP~~n~~~~~w~~~~p~G~~SSYifsLKpGDKv~~sG-P 273 (425)
T TIGR01941 195 NLFDLVSKVDQLPAEETVRAYSMANYPEEKGIIKLNVRIATPPFDNGKANKWNSDIPPGIMSSYIFSLKPGDKVTVSG-P 273 (425)
T ss_pred CCEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-C
T ss_conf 625477740335641024332023472417877999884188887676432346789872133377447987779977-8
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCHHHHHH-HHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 73216432235866999975867277899-88763410357857999951998898733566898986445777405884
Q gi|254780363|r 104 TGTLVLDALIPGNRLYLFSTGTGIAPFVS-VIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKL 182 (264)
Q Consensus 104 ~G~f~~d~~~~~~~lilIAgGtGItP~~s-ii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~ 182 (264)
+|.|...+. ...+|||+||.|.|||+| |+.++...+..|+|.+.||||+..|.+|.+|+..+... +.||
T Consensus 274 fGefF~kDt--daemvFigGGAGmap~RshIld~L~~lks~Rk~sfWYGARS~~E~fY~edf~~L~~e--------~pNF 343 (425)
T TIGR01941 274 FGEFFAKDT--DAEMVFIGGGAGMAPMRSHILDLLKRLKSKRKISFWYGARSKREIFYEEDFDQLEAE--------NPNF 343 (425)
T ss_pred CCCCEEEEC--CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHH--------CCCC
T ss_conf 885302457--864389733735403689999998600236502455365212443224447889864--------8993
Q ss_pred EEEEECCCCC--CCCCC------CCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 3898204544--44465------677543110478852899887313789996898999999999998698531
Q gi|254780363|r 183 KFYRTVTQED--YLYKG------RITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREG 248 (264)
Q Consensus 183 ~~~~~~s~e~--~~~~g------rit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~ 248 (264)
+|+.++|.|. +.|.| -.|+.|+. .+.+......-.||+..+|+||||.|..+|.++|.++|++.+
T Consensus 344 ~~H~aLSdP~PEDnw~Gwdkddp~~tgFih~-vl~~nyLk~h~aPED~efYmCGPP~mn~av~kmL~~lGVe~~ 416 (425)
T TIGR01941 344 KWHVALSDPQPEDNWTGWDKDDPTYTGFIHN-VLYENYLKDHDAPEDCEFYMCGPPLMNAAVIKMLEDLGVERE 416 (425)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCH
T ss_conf 7999854868851006777678610247787-776423213778764255206883237999999885389700
No 40
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=100.00 E-value=1.4e-34 Score=251.02 Aligned_cols=217 Identities=15% Similarity=0.193 Sum_probs=158.1
Q ss_pred CCCCCEEEEEEEECCCCE--EEEEEECCCCCCCCCCCEEEEEE---ECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCC
Q ss_conf 653106898888479986--99998077899839971799998---4398588766542285768-86058999943888
Q gi|254780363|r 10 VNVYCESVISIKHYTDRL--FRFCITRPKSFRFRSGEFVMLGL---MVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGP 83 (264)
Q Consensus 10 ~~~~~~~V~~v~~~t~~~--~~~~l~~~~~~~f~~GQ~v~i~~---~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~ 83 (264)
.++-..++.++..+|+++ |+|.|..++.+.-.+.--++.+. ...+..+.|+||+.|.+++ +++|++|+++++|+
T Consensus 50 ~k~~~~~L~ev~~~thdt~lfRF~l~~~~~~~l~~~s~l~~~~~~g~~~~~~~~RpYTPIS~~~~~G~fDLlVK~Yp~Gk 129 (325)
T PTZ00274 50 QRYEPYQLGEVIPITHDTALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDGL 129 (325)
T ss_pred CCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 45246574552442566247999668600158611145332241278767677468578998998625999999689995
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH------CCCCCEEEEEECCCHHH
Q ss_conf 566100123885100257887321643223586699997586727789988763410------35785799995199889
Q gi|254780363|r 84 LTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTY------EKFDEVIVTQTCRQVVE 157 (264)
Q Consensus 84 ~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~------~~~~~i~L~~g~R~~~d 157 (264)
+|++|++|++||++.+.| |.|.|.+..- ..+++-|||||||||||++++|..... +...+|+|+|++++++|
T Consensus 130 mS~hl~~Lk~GDtl~fkG-P~~k~~ykpN-~~k~IgMIAGGTGITPMyQvir~Il~nP~d~~~~DkTkvsLlyaN~Te~D 207 (325)
T PTZ00274 130 MTNHLFGMHVGDKLLFRS-VTFKIQYRPN-RWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERH 207 (325)
T ss_pred HHHHHHCCCCCCEEEEEC-CCCCCCCCCC-CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHH
T ss_conf 455763589999898978-8767753698-66668897358776679999999971976567678758999992298788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC--CCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHH
Q ss_conf 8733566898986445777405884389820454--44446567754311047885289988731378999689899999
Q gi|254780363|r 158 LQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE--DYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVD 235 (264)
Q Consensus 158 l~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e--~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~ 235 (264)
++.++++..+. ..++++|+++.+++++ ...|.|.+ +++...-+++.+ +..+.++..+++||||+|+++
T Consensus 208 ILLk~ELD~la-------~~yP~rFkv~Y~Ld~p~~p~~W~g~~-G~ITkEmik~~l--P~P~~~~~~IlvCGPPpM~~a 277 (325)
T PTZ00274 208 ILLKGLFDDLA-------RRYSNRFKVYYTIDQAVEPDKWNHFL-GYVTKEMVRRTM--PAPEEKKKIIMLCGPDQLLNH 277 (325)
T ss_pred HHHHHHHHHHH-------HHCCCCEEEEEEECCCCCCCCCCCCC-CEECHHHHHHHC--CCCCCCCEEEEEECCHHHHHH
T ss_conf 00199999999-------87888579999968999998985776-764899999768--799778738999488789774
Q ss_pred HHH
Q ss_conf 999
Q gi|254780363|r 236 MKD 238 (264)
Q Consensus 236 v~~ 238 (264)
+..
T Consensus 278 isG 280 (325)
T PTZ00274 278 VAG 280 (325)
T ss_pred HCC
T ss_conf 138
No 41
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=6.5e-33 Score=239.86 Aligned_cols=208 Identities=22% Similarity=0.325 Sum_probs=160.0
Q ss_pred CEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEEEEECCCEEEEEEEEECCCCC-CCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 068988884799869999807789-9839971799998439858876654228576-88605899994388856610012
Q gi|254780363|r 14 CESVISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRRISRAYSMASPCW-DDKLEFFSIKVEQGPLTTHLQNI 91 (264)
Q Consensus 14 ~~~V~~v~~~t~~~~~~~l~~~~~-~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~-~~~le~~i~~v~~G~~S~~L~~l 91 (264)
..+|++++++|++++.|++..+.. ++|+||||+.|.++. ..+|+||++|.+. +++++|+++..+.|++|.+++.+
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~ 85 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVALTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGL 85 (252)
T ss_pred CCEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEECCC---CCEEEEECCCCCCCCCCEEEEEEEEECCHHHHHHHHC
T ss_conf 6279999970797499999676534667999789999189---9678732256766678169999997188789999744
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 38851002578873216432235866999975867277899887634103578579999519988987335668989864
Q gi|254780363|r 92 QPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171 (264)
Q Consensus 92 ~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~ 171 (264)
++||.|.+.| |+|.+...+. ..+.+++||||||+||++++++++.......+++++||+|+++|+++.+++..+...
T Consensus 86 k~gd~i~v~G-P~G~~~~~~~-~~~~vlliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~dl~~~~el~~~~~~- 162 (252)
T COG0543 86 KEGDKIRVRG-PLGNGFLREK-IGKPVLLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGARTAKDLLLLDELEELAEK- 162 (252)
T ss_pred CCCCEEEEEC-CCCCCCCCCC-CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCHHHHHHHHCC-
T ss_conf 6798899975-6778713345-687299997634688899999999866898558999941767872538999974166-
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 4577740588438982045444446567754311047885289988731378999689899999999999869853
Q gi|254780363|r 172 EILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 172 ~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264)
.++++++ ..|.|+. +.+....+.+. +..+.+.+|+||||+|++++.+.+.+.|+..
T Consensus 163 -----------~~~~~~~---~~~~G~~-G~v~~~~~~~~-----~~~~~~~v~~cGp~~M~~~v~~~~~~~g~~~ 218 (252)
T COG0543 163 -----------EVHPVTD---DGWKGRK-GFVTTDVLKEL-----LDLEVDDVYICGPPAMVKAVREKLKEYGVPI 218 (252)
T ss_pred -----------EEEEEEC---CCCCCCC-CCCCHHHHHHH-----CCCCCCEEEEECCHHHHHHHHHHHHHCCCCH
T ss_conf -----------0799827---9987644-74128998653-----4566677999798899999999998729830
No 42
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=2.5e-32 Score=235.93 Aligned_cols=191 Identities=24% Similarity=0.374 Sum_probs=146.2
Q ss_pred EEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 68988884799869999807789983997179999843985887665422857688605899994388856610012388
Q gi|254780363|r 15 ESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPG 94 (264)
Q Consensus 15 ~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~l~~G 94 (264)
.||.+++++|+++++|+|. .+|.|+||||+.|.++..++ ||||+++.+. .++|.++++ |++|.+|+++++|
T Consensus 1 ~~i~ev~~et~~v~t~~l~--~~~~~~pGQFv~l~~~~~~~---~p~si~~~~~--~~~~~v~~v--G~~T~~l~~~~~G 71 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFD--WDFDFKPGQFVMVWVPGVDE---IPMSLSYIDG--PNSITVKKV--GEATSALHDLKEG 71 (233)
T ss_pred CEEEEEEHHCCCCEEEEEC--CCCCCCCCCEEEEEECCCCC---EEEEEECCCC--CCEEEEEEE--CHHHHHHHCCCCC
T ss_conf 9899971218982899988--88984899759999899994---6789966899--647999997--8379899708999
Q ss_pred CEEECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 510025788732-1643223586699997586727789988763410357857999951998898733566898986445
Q gi|254780363|r 95 DTILLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEI 173 (264)
Q Consensus 95 d~i~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~ 173 (264)
|+|.+.+ |.|. |.+ ++++++|||||+||||+++|++++. ...+++++||+|+.++++|.+++..
T Consensus 72 d~i~v~G-P~G~~f~~----~~~~~llvaGG~GiaPl~~l~~~l~---~~~~v~~~~G~rs~~~l~~~~el~~------- 136 (233)
T cd06220 72 DKLGIRG-PYGNGFEL----VGGKVLLIGGGIGIAPLAPLAERLK---KAADVTVLLGARTKEELLFLDRLRK------- 136 (233)
T ss_pred CEEEEEE-CCCCCCCC----CCCEEEEEECCEEHHHHHHHHHHHH---HCCCEEEEEECCCHHHHHHHHHHHH-------
T ss_conf 9899983-35774012----7981999917464677799999998---6698799997587688656998863-------
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 7774058843898204544444656775431104788528998873137899968989999999999986985
Q gi|254780363|r 174 LKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 174 ~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
...+++ +..+.+..++|++++.+ +.+... ..+.+|+|||++|++++.+.+.++|+.
T Consensus 137 -----~~~~~i--~tdDGs~G~kG~Vt~~l------~~l~~~----~~d~v~~CGP~~Mmkav~~~~~~~gv~ 192 (233)
T cd06220 137 -----SDELIV--TTDDGSYGFKGFVTDLL------KELDLE----EYDAIYVCGPEIMMYKVLEILDERGVR 192 (233)
T ss_pred -----HCCEEE--EECCCCCCCCCCHHHHH------HHHCCC----CCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf -----271689--94578888643676879------863456----788999979869999999999874998
No 43
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=100.00 E-value=1.6e-31 Score=230.51 Aligned_cols=201 Identities=19% Similarity=0.291 Sum_probs=152.9
Q ss_pred EEEEEECCCCEEEEEEECCCC-CCCCCCCEEEEEEECCCEE-EEEEEEECCCC-CCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 988884799869999807789-9839971799998439858-87665422857-68860589999438885661001238
Q gi|254780363|r 17 VISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRR-ISRAYSMASPC-WDDKLEFFSIKVEQGPLTTHLQNIQP 93 (264)
Q Consensus 17 V~~v~~~t~~~~~~~l~~~~~-~~f~~GQ~v~i~~~~~g~~-~~R~YSiaS~p-~~~~le~~i~~v~~G~~S~~L~~l~~ 93 (264)
|++.+++|++++.|+++.|+. ..++||||+.|+++..++. .+|||||+|.+ .++.++|+++.+ |..|.+|+++++
T Consensus 1 Iv~~~~l~~~~~~l~l~~p~~a~~~~PGQFv~v~~~~~~~~~l~rP~Si~~~~~~~~~l~~~v~~v--G~~T~~l~~l~~ 78 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVV--GKGTRLLSELKA 78 (246)
T ss_pred CEEEEEECCCEEEEEEECCCHHHCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCEEEEEEEEE--CHHHHHHHCCCC
T ss_conf 965699349979999976874315899835999968999731214169840158999999999994--826889961899
Q ss_pred CCEEECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8510025788732-164322358669999758672778998876341035785799995199889873356689898644
Q gi|254780363|r 94 GDTILLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDE 172 (264)
Q Consensus 94 Gd~i~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~ 172 (264)
||+|.+.+ |+|. |.+++ ..++++|||||+||||++++++++.. ...+++++||+|++++++|.+++..+
T Consensus 79 Gd~v~v~G-P~G~~f~~~~--~~~~~llvaGG~GiaPl~~l~~~l~~--~~~~v~~i~G~r~~~~l~~~~el~~~----- 148 (246)
T cd06218 79 GDELDVLG-PLGNGFDLPD--DDGKVLLVGGGIGIAPLLFLAKQLAE--RGIKVTVLLGFRSADDLFLVEEFEAL----- 148 (246)
T ss_pred CCEEEEEE-CCCCCEECCC--CCCCEEEEECCCCHHHHHHHHHHHHH--CCCCEEEEEECCCHHHHHHHHHHHHH-----
T ss_conf 79899995-3578567447--89729999657315439999999997--49928999974776885449999973-----
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 57774058843898204544444656775431104788528998873137899968989999999999986985
Q gi|254780363|r 173 ILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 173 ~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
..++++ +..+.+....|++++.+. +.. .+...+.+|+|||++|++++.+++++.|+.
T Consensus 149 ------~~~v~i--~tdDGs~G~~G~vtd~l~-----~~~----~~~~~~~i~~cGP~~Mmk~v~~~~~~~gi~ 205 (246)
T cd06218 149 ------GAEVYV--ATDDGSAGTKGFVTDLLK-----ELL----AEARPDVVYACGPEPMLKAVAELAAERGVP 205 (246)
T ss_pred ------CCCEEE--EECCCCCCCEEEHHHHHH-----HHH----HCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf ------792999--947899973365479898-----652----226898999979999999999999973996
No 44
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=100.00 E-value=8.2e-31 Score=225.82 Aligned_cols=200 Identities=21% Similarity=0.334 Sum_probs=152.6
Q ss_pred CCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 53106898888479986999980778998399717999984398588766542285768860589999438885661001
Q gi|254780363|r 11 NVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQN 90 (264)
Q Consensus 11 ~~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~ 90 (264)
.+..++|++++++|+++++|+|+.+ +.|+||||+.|+++..+...+|||||++. +++.++|.++.| |+.|.+|++
T Consensus 3 ~p~~~~Iv~~~~~~~~i~~l~l~~~--~~~~PGQFv~l~~~~~~~~l~rP~Si~~~-~~~~~~i~v~~v--G~gT~~l~~ 77 (248)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGD--FVFKPGQFVMVWVWDDPGLLERPISISDI-DKNENTILYRAV--GEGTKKLSK 77 (248)
T ss_pred CCEEEEEEEEEEECCCEEEEEECCC--CCCCCCCEEEEEECCCCCCCCEEEEEEEC-CCCEEEEEEEEE--CHHHHHHHC
T ss_conf 7704799999995799799998466--87799977999978889844364199963-898589999998--879999961
Q ss_pred CCCCCEEECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 2388510025788732-164322358669999758672778998876341035785799995199889873356689898
Q gi|254780363|r 91 IQPGDTILLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEIS 169 (264)
Q Consensus 91 l~~Gd~i~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~ 169 (264)
+++||.|.+.| |+|. |.++. .++++++||||+||||++++++++. ++..++++++|+|+.++++|.+++..+
T Consensus 78 l~~Gd~l~v~G-PlGngf~~~~--~~~~~llVaGGiGiAPl~~l~~~l~--~~~~~v~~i~G~r~~~~l~~~~el~~~-- 150 (248)
T PRK00054 78 LKEGDELDIRG-PLGNGFDLEK--IGGKVLLVGGGIGVAPLYELAKQLK--AKGVEVTTVLGARTKDEVIFEDEFEKY-- 150 (248)
T ss_pred CCCCCEEEEEC-CCCCCCCCCC--CCCEEEEEECCCCCCCHHHHHHHHH--HCCCCEEEEEECCCHHHCCHHHHHHHH--
T ss_conf 88999897452-5688723677--8961999967674576899999999--729977999975887981179999865--
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 6445777405884389820454444465677543110478852899887313789996898999999999998698
Q gi|254780363|r 170 QDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKF 245 (264)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~ 245 (264)
.+++. +..+.+...+|.+|+.+.. .+.+.+.+|.|||++|++++.+.+.+.|.
T Consensus 151 ----------~~~~i--~tddGs~G~~G~vt~~l~~-----------~~~~~d~v~~cGP~~Mmk~v~~~~~~~~~ 203 (248)
T PRK00054 151 ----------GDVYV--ATDDGSYGFKGFVTDVLDE-----------LDLDYDAIYSCGPEIMMKKVVEILKEKKV 203 (248)
T ss_pred ----------CCEEE--EECCCCCCCCCEECHHHHH-----------CCCCCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf ----------47679--8067867665171031232-----------25686899996998999999999875599
No 45
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.98 E-value=1.1e-31 Score=231.73 Aligned_cols=225 Identities=20% Similarity=0.283 Sum_probs=165.6
Q ss_pred CCCCEEEEEEEECCC----CEEEEEEECCCC-------CCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEE
Q ss_conf 531068988884799----869999807789-------983997179999843985887665422857688605899994
Q gi|254780363|r 11 NVYCESVISIKHYTD----RLFRFCITRPKS-------FRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKV 79 (264)
Q Consensus 11 ~~~~~~V~~v~~~t~----~~~~~~l~~~~~-------~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v 79 (264)
.....+++++++.|. .++.++|.+++. .+|++|..+.|. | .+....|.|||||.+.|+.+|+.++++
T Consensus 44 ~~~~~~L~~R~~ln~~~~~~t~ilrl~~~~~~~~~~~~p~f~aGDLl~i~-P-p~~~~~R~YSiAs~~~dg~~~l~Vr~~ 121 (289)
T cd06201 44 RTKALELVERKDYGAAVQAPTAILRFKPAKRKLSGKGLPSFEAGDLLGIL-P-PGSDVPRFYSLASSSSDGFLEICVRKH 121 (289)
T ss_pred CCCCEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEC-C-CCCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 76143898411049877897179998526455444668888877732334-8-999987522404369999799999967
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHH-HH
Q ss_conf 38885661001238851002578873216432235866999975867277899887634103578579999519988-98
Q gi|254780363|r 80 EQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVV-EL 158 (264)
Q Consensus 80 ~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~-dl 158 (264)
++|.+|+||+.+++||+|.+.-.+...|.+.. +..++||||.|||||||++||++.. ...+++||||+|+++ |.
T Consensus 122 ~~GlcS~~L~~L~~Gd~i~~~ir~n~~F~~P~--~~~PvImIg~GTGIAPfrgfl~~~~---~~~~~~LffG~R~~~~D~ 196 (289)
T cd06201 122 PGGLCSGYLHGLKPGDTIKAFIRPNPSFRPAK--GAAPVILIGAGTGIAPLAGFIRANA---ARRPMHLYWGGRDPASDF 196 (289)
T ss_pred CCCCCHHHHHCCCCCCEEEEEEECCCCCCCCC--CCCCEEEEECCCCCHHHHHHHHHHH---HCCCEEEEECCCCCCCCH
T ss_conf 99743677715999898999983499877999--9998899917867188899999765---149849995178888767
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHH
Q ss_conf 733566898986445777405884-3898204544444656775431104788528998873137899968989999999
Q gi|254780363|r 159 QYGIDVMHEISQDEILKDLIGQKL-KFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMK 237 (264)
Q Consensus 159 ~y~~~l~~~~~~~~~~~~~~~~~~-~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~ 237 (264)
+|.+++..+.... .+ ++..+.||+.. +.+|++.|....- . +..+-.++.++||||...|-++|.
T Consensus 197 lY~~el~~~~~~g---------~l~~l~~AfSR~~~--k~YVQd~l~~~~~-~---v~~~l~~ga~iyVCGs~~Ma~~V~ 261 (289)
T cd06201 197 LYEDELDQYLADG---------RLTQLHTAFSRTPD--GAYVQDRLRADAE-R---LRRLIEDGAQIMVCGSRAMAQGVA 261 (289)
T ss_pred HHHHHHHHHHHCC---------CCCEEEEEECCCCC--CCCHHHHHHHHHH-H---HHHHHHCCCEEEEECCCHHHHHHH
T ss_conf 8999999999769---------95257665435887--5128999999899-9---999998898999948960899999
Q ss_pred HHHHHC----CCCCCCCCCCCEEE
Q ss_conf 999986----98531567995099
Q gi|254780363|r 238 DLLIAK----KFREGSNSRPGTFV 257 (264)
Q Consensus 238 ~~L~~~----G~~~~~~~~~g~~~ 257 (264)
+.|.+. |++-...++.|+|.
T Consensus 262 ~aL~~Il~~~gl~~~~l~~~GRy~ 285 (289)
T cd06201 262 AVLEEILAPQPLSLDELKLQGRYA 285 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999997435399999878810
No 46
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.97 E-value=3e-30 Score=222.09 Aligned_cols=223 Identities=18% Similarity=0.221 Sum_probs=161.6
Q ss_pred EEEEEEECCCC-----EEEEEEECC-CCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECC-----CCC
Q ss_conf 89888847998-----699998077-8998399717999984398588766542285768860589999438-----885
Q gi|254780363|r 16 SVISIKHYTDR-----LFRFCITRP-KSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQ-----GPL 84 (264)
Q Consensus 16 ~V~~v~~~t~~-----~~~~~l~~~-~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~-----G~~ 84 (264)
++.++.+.||. +|.++|.++ ...+|+||+.+.|. |. +....|.|||||.|.++.+++.+++++. |.+
T Consensus 2 ~l~~r~~~np~s~g~~~~~l~l~~~~~~~~~~aGDll~I~-p~-~p~~pR~YSIAS~p~dg~v~L~Vr~~~~~~~~~Gvc 79 (245)
T cd06200 2 RLQARVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIG-PR-HPLPHREYSIASLPADGALELLVRQVRHADGGLGLG 79 (245)
T ss_pred CCCCCEECCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEE-CC-CCCCCCCEEEEECCCCCEEEEEEEEEECCCCCCEEE
T ss_conf 4430000598898885589997479999997888877851-79-999875446615699997999999974589996664
Q ss_pred CCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHH-HHHHHH
Q ss_conf 661001-238851002578873216432235866999975867277899887634103578579999519988-987335
Q gi|254780363|r 85 TTHLQN-IQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVV-ELQYGI 162 (264)
Q Consensus 85 S~~L~~-l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~-dl~y~~ 162 (264)
|+||++ +++||+|.+..++...|.+.+ +..++||||+|||||||+|++++....+ ....+||+|+|+++ |.+|.+
T Consensus 80 S~~L~~~~~~Gd~v~~~i~~~~~F~lP~--~~~PvImIg~GTGIAPfrgfl~er~~~~-~~~~wLfFG~R~~~~D~ly~~ 156 (245)
T cd06200 80 SGWLTRHAPIGASVALRLRENPGFHLPD--DGRPLILIGNGTGLAGLRSHLRARARAG-RHRNWLLFGERQAAHDFFCRE 156 (245)
T ss_pred HHHHHCCCCCCCEEEEEECCCCCCCCCC--CCCCEEEEECCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCHHHHH
T ss_conf 8786347889998999944598675899--9998899956857177899999999726-688389950458745424899
Q ss_pred HHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCH-HHHHHHHHHH
Q ss_conf 66898986445777405884-389820454444465677543110478852899887313789996898-9999999999
Q gi|254780363|r 163 DVMHEISQDEILKDLIGQKL-KFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSP-TMIVDMKDLL 240 (264)
Q Consensus 163 ~l~~~~~~~~~~~~~~~~~~-~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp-~Mi~~v~~~L 240 (264)
++..+.... .+ ++..+.||++. .+.+|++.+.... .+. -.+-.+++++||||.. .|-++|.+.|
T Consensus 157 el~~~~~~g---------~l~~l~~AfSRd~~-~k~YVQd~l~e~~-~~v---~~~l~~ga~iyVCG~~~~Ma~~V~~aL 222 (245)
T cd06200 157 ELEAWQAAG---------HLARLDLAFSRDQA-QKRYVQDRLRAAA-DEL---RAWVAEGAAIYVCGSLQGMAPGVDAVL 222 (245)
T ss_pred HHHHHHHCC---------CCCEEEEEECCCCC-CCCCHHHHHHHHH-HHH---HHHHHCCCEEEEECCCHHHHHHHHHHH
T ss_conf 999999709---------97467789803699-9873465688769-999---999987949999899416579999999
Q ss_pred HHC----CCCCCCCCCCCEEEEE
Q ss_conf 986----9853156799509999
Q gi|254780363|r 241 IAK----KFREGSNSRPGTFVVE 259 (264)
Q Consensus 241 ~~~----G~~~~~~~~~g~~~~E 259 (264)
.+. +++ ..++.|+|+.+
T Consensus 223 ~~Il~~~~l~--~L~~~gRY~~D 243 (245)
T cd06200 223 DEILGEEAVE--ALLAAGRYRRD 243 (245)
T ss_pred HHHHHHHHHH--HHHHCCCEECC
T ss_conf 9999999999--99987984111
No 47
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.97 E-value=1.6e-30 Score=223.84 Aligned_cols=233 Identities=18% Similarity=0.303 Sum_probs=169.5
Q ss_pred CCCCCCCCCCCCE-----EEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEEC-----------------------
Q ss_conf 7774436653106-----89888847998699998077--89983997179999843-----------------------
Q gi|254780363|r 3 DVSPKLPVNVYCE-----SVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLMV----------------------- 52 (264)
Q Consensus 3 ~~~~~~p~~~~~~-----~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~~----------------------- 52 (264)
|..-++|++.|.+ ||++......=+..++|..| +..+|+||-|++|.+|.
T Consensus 120 dm~levpEe~fgvkkWectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~l 199 (410)
T COG2871 120 DMDLEVPEEVFGVKKWECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNL 199 (410)
T ss_pred CCEEECHHHHCCCCCEEEEEEECCCHHHHHHHHEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCHHHHCH
T ss_conf 62252427760745315899707756545554125079998366478866999538733031246798467453355231
Q ss_pred ------CCEEEEEEEEECCCCCCCCEEEEEEEE----------CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf ------985887665422857688605899994----------3888566100123885100257887321643223586
Q gi|254780363|r 53 ------NGRRISRAYSMASPCWDDKLEFFSIKV----------EQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGN 116 (264)
Q Consensus 53 ------~g~~~~R~YSiaS~p~~~~le~~i~~v----------~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~ 116 (264)
..+++.|+||+||-|.+..+..+.+++ |-|++|+|++.||+||.+.|+| |+|.|...+ ...
T Consensus 200 f~~vs~v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisG-PfGEfFaKd--tda 276 (410)
T COG2871 200 FRYVSKVDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISG-PFGEFFAKD--TDA 276 (410)
T ss_pred HEEECCCCHHHHHHHHHHCCHHHCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEEC-CCHHHHHCC--CCC
T ss_conf 00121453687877664148123474799888527999899999412110478506997479836-614543126--887
Q ss_pred EEEEEECCCCHHHHHHH-HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--C
Q ss_conf 69999758672778998-87634103578579999519988987335668989864457774058843898204544--4
Q gi|254780363|r 117 RLYLFSTGTGIAPFVSV-IRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED--Y 193 (264)
Q Consensus 117 ~lilIAgGtGItP~~si-i~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~--~ 193 (264)
.++||+||.|.+||+|- +.++......++|.+.||+|+..|.+|.++..++.+. +.||+|..++|++. .
T Consensus 277 emvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae--------~pNF~wH~aLSdplpED 348 (410)
T COG2871 277 EMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAE--------NPNFHWHLALSDPLPED 348 (410)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCC
T ss_conf 3699835867671177899999865036525666220077777778778888753--------89817999736888766
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 4465677543110478852899887313789996898999999999998698531
Q gi|254780363|r 194 LYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREG 248 (264)
Q Consensus 194 ~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~ 248 (264)
.|.|+ |+.+.+ .+..........|++..+|+||||-|..++.++|.++|++..
T Consensus 349 nW~g~-TgFihn-v~~en~Lk~h~aPEDceyYmCGPp~mNasvikmL~dlGVE~e 401 (410)
T COG2871 349 NWDGY-TGFIHN-VLYENYLKDHEAPEDCEYYMCGPPLMNASVIKMLKDLGVERE 401 (410)
T ss_pred CCCCC-HHHHHH-HHHHHHHHCCCCCHHEEEEEECCCHHHHHHHHHHHHCCCCCC
T ss_conf 85442-128999-987635315998013057751750111899999886196400
No 48
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.97 E-value=5.2e-30 Score=220.43 Aligned_cols=238 Identities=18% Similarity=0.201 Sum_probs=167.3
Q ss_pred CCCCCCEEEEEEEECCC-----CEEEEEEEC-CCCCCCCCCCEEEEEE---ECCCEE-EEEEEEECCCCC-----CCCEE
Q ss_conf 66531068988884799-----869999807-7899839971799998---439858-876654228576-----88605
Q gi|254780363|r 9 PVNVYCESVISIKHYTD-----RLFRFCITR-PKSFRFRSGEFVMLGL---MVNGRR-ISRAYSMASPCW-----DDKLE 73 (264)
Q Consensus 9 p~~~~~~~V~~v~~~t~-----~~~~~~l~~-~~~~~f~~GQ~v~i~~---~~~g~~-~~R~YSiaS~p~-----~~~le 73 (264)
|..+..+||+-..+.|+ ++..+-|.- ..+|++--||-+-|-- ..+|++ ..|-|||||+-+ ...+.
T Consensus 139 ~~~p~~atv~gn~r~t~~~~~~d~~hivldfg~~~fpvlEGQSiGIIPPG~d~~GkPH~~RLYSIAS~R~Gd~~~~~tvS 218 (411)
T TIGR03224 139 VKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLA 218 (411)
T ss_pred CCCCEEEEEECEEECCCCCCCCCEEEEEECCCCCCCCEECCCEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEE
T ss_conf 89973689964077145788763048997168985642257576464899898998461267885367578788997788
Q ss_pred EEEEEEC--------CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH---HHCC
Q ss_conf 8999943--------8885661001238851002578873216432235866999975867277899887634---1035
Q gi|254780363|r 74 FFSIKVE--------QGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPG---TYEK 142 (264)
Q Consensus 74 ~~i~~v~--------~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~---~~~~ 142 (264)
+.++++. .|.+|+||++|++||+|.|.||-+..|.+.+. |..+|||||.|||||||++|++... ..+.
T Consensus 219 LcVrR~~~~~~g~~~~GVcSnyLCDlkpGd~V~itGP~Gk~FLLP~D-P~a~IIMIaTGTGIAPFRafl~rr~~~~~~g~ 297 (411)
T TIGR03224 219 LTVKRVTTDHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPNH-PESSIMMICTGTGSAPMRAMTERRRRRRDHGE 297 (411)
T ss_pred EEEEEEEECCCCCCCCCEEECCCCCCCCCCEEEEECCCCCEEECCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99888356578963131630001579989989996787864558899-89886999368774337999999987430389
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCC
Q ss_conf 78579999519988987335668989864457774058843898204544444656775431104788528998873137
Q gi|254780363|r 143 FDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTD 222 (264)
Q Consensus 143 ~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~ 222 (264)
.++++||+|+|+.+++.|.+++....+. .+.+..++||+...-+-+|++.+... -.+. +.-+..+++
T Consensus 298 ~Gk~wLFFGar~t~~lLY~~ele~~~kd----------~~dl~~AfSRe~~~~K~YVQDri~E~-Adev--~~lLqd~ga 364 (411)
T TIGR03224 298 GGKLMLFFGARTKEELPYFGPLQKLPKD----------FIDINFAFSRTPEQPKRYVQDAIRER-AADV--AALLKDPNT 364 (411)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHH----------CCCEEEEEECCCCCCCEEHHHHHHHH-HHHH--HHHHHCCCC
T ss_conf 8618999469883115545899986762----------55258998447899954278899998-9999--999738994
Q ss_pred EEEEECCHHHHHHHHHHH----HHCCCC----CCCCCCCCEEEEEE
Q ss_conf 899968989999999999----986985----31567995099998
Q gi|254780363|r 223 RIMICGSPTMIVDMKDLL----IAKKFR----EGSNSRPGTFVVER 260 (264)
Q Consensus 223 ~vyiCGpp~Mi~~v~~~L----~~~G~~----~~~~~~~g~~~~E~ 260 (264)
++|+||..+|...+.++| .+.|+. ....++.|+.++|.
T Consensus 365 hiYvCGLKGMe~GV~eAl~~iA~~~G~~W~~~~~~Lkk~gRwHVEt 410 (411)
T TIGR03224 365 YIYICGLKGMEEGVLDAFRDVCATNGLSWETLEPRLRAEGRLHLET 410 (411)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 8999660314677999999999973999899999998738504540
No 49
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.97 E-value=8.8e-29 Score=212.23 Aligned_cols=199 Identities=19% Similarity=0.255 Sum_probs=149.8
Q ss_pred EEEEEECCCCEEEEEEECCCC-CCCCCCCEEEEEEECCCEEEEEEEEECCCC-CCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 988884799869999807789-983997179999843985887665422857-688605899994388856610012388
Q gi|254780363|r 17 VISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRRISRAYSMASPC-WDDKLEFFSIKVEQGPLTTHLQNIQPG 94 (264)
Q Consensus 17 V~~v~~~t~~~~~~~l~~~~~-~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p-~~~~le~~i~~v~~G~~S~~L~~l~~G 94 (264)
|++.+++++++|.+++..|.. -.++||||+.|.++.++...+|||||++.+ .++.++|.++.+ |..|.+|+++++|
T Consensus 1 I~~~~~l~~~~~~l~~~ap~~a~~~~PGQFv~v~~~~~~~~~~rP~si~~~~~~~~~i~~~v~~v--G~~T~~l~~l~~G 78 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLAARLFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIR--GPKTKLIAELKPG 78 (243)
T ss_pred CEEEEEECCCEEEEEEECCCHHHCCCCCCEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEEE--CHHHHHHHCCCCC
T ss_conf 92279955987999998817474089996599996898971148799887579899999999967--8579899638999
Q ss_pred CEEECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 510025788732-1643223586699997586727789988763410357857999951998898733566898986445
Q gi|254780363|r 95 DTILLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEI 173 (264)
Q Consensus 95 d~i~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~ 173 (264)
|.+.+.+ |+|. |..+. ..+++++||||+||||++++++++.. ...++.+++|+|+.+++++.+++..
T Consensus 79 d~l~v~G-P~G~~f~~~~--~~~~~llVaGG~GiaPl~~l~~~l~~--~g~~v~~i~g~r~~~~~~~~~~~~~------- 146 (243)
T cd06192 79 EKLDVMG-PLGNGFEGPK--KGGTVLLVAGGIGLAPLLPIAKKLAA--NGNKVTVLAGAKKAKEEFLDEYFEL------- 146 (243)
T ss_pred CEEEEEC-CCCCCCCCCC--CCCEEEEEECCCCHHHHHHHHHHHHH--CCCCEEEEEEECCHHHHHHHHHHHH-------
T ss_conf 9998774-5568703467--89769999567341659999999987--7996699999388899423899997-------
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 777405884389820454444465677543110478852899887313789996898999999999998698
Q gi|254780363|r 174 LKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKF 245 (264)
Q Consensus 174 ~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~ 245 (264)
...++.+ +..+.+..++|++++... ... ..+.+.+|.|||++|++++.+.+.+.|.
T Consensus 147 ----~~~~~~~--~tddgs~g~~g~v~~~~~------~~~----~~~~d~v~~cGP~~Mm~~v~~~~~~~~~ 202 (243)
T cd06192 147 ----PADVEIW--TTDDGELGLEGKVTDSDK------PIP----LEDVDRIIVAGSDIMMKAVVEALDEWLQ 202 (243)
T ss_pred ----HCCEEEE--EECCCCCCCCCEEEEEEE------CCC----CCCCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf ----2884889--836887763517867630------024----5688899997999999999999996099
No 50
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.96 E-value=1.7e-28 Score=210.32 Aligned_cols=187 Identities=17% Similarity=0.232 Sum_probs=126.7
Q ss_pred EEEECCCCEEEEEEECCCC---CCCCCCCEEEEEEECC---CE-------------EEEEEEEECCCCCC----CCEEEE
Q ss_conf 8884799869999807789---9839971799998439---85-------------88766542285768----860589
Q gi|254780363|r 19 SIKHYTDRLFRFCITRPKS---FRFRSGEFVMLGLMVN---GR-------------RISRAYSMASPCWD----DKLEFF 75 (264)
Q Consensus 19 ~v~~~t~~~~~~~l~~~~~---~~f~~GQ~v~i~~~~~---g~-------------~~~R~YSiaS~p~~----~~le~~ 75 (264)
+.+.+|++|.+|++...++ ..|+||||+.|.++.. |. ...|.|||+|+|.. .++++-
T Consensus 2 kke~ltp~i~~F~f~~~d~~~~~~~~pGQ~itl~~~~~l~~gy~hm~d~~P~slndd~vRtyTiSS~P~~~~~~~~~~It 81 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEIT 81 (220)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEE
T ss_conf 64315887016999808976566789965799976655676614404799864567734898862389998877679999
Q ss_pred EEEECCCCCCCCCC-CCCCC----CEEECCCCCCCCCCCCCC--CCCCEEEEEECCCCHHHHHHHHHHHHHHC-CCCCEE
Q ss_conf 99943888566100-12388----510025788732164322--35866999975867277899887634103-578579
Q gi|254780363|r 76 SIKVEQGPLTTHLQ-NIQPG----DTILLHKKSTGTLVLDAL--IPGNRLYLFSTGTGIAPFVSVIRDPGTYE-KFDEVI 147 (264)
Q Consensus 76 i~~v~~G~~S~~L~-~l~~G----d~i~i~~~p~G~f~~d~~--~~~~~lilIAgGtGItP~~sii~~~~~~~-~~~~i~ 147 (264)
++ ++|.+|+||| +++.| +++.+.| |.|.|++++. ...++++|||||+|||||+||++.+.... ...+++
T Consensus 82 vk--~~G~vS~~Lh~~~~~g~~~g~~~p~~G-~~G~F~l~~~~~~~~~~~~~~~~g~gitp~~~~~~~~~~~~~~~~~v~ 158 (220)
T cd06197 82 VR--KKGPVTGFLFQVARRLREQGLEVPVLG-VGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDIT 158 (220)
T ss_pred EE--ECCCCCHHHHHHHHCCCCCCEEEEEEC-CCCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEE
T ss_conf 98--788436889875652577643777553-776657236777767734898246666608999999874557787689
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEE
Q ss_conf 99951998898733566898986445777405884389820454444465677543110478852899887313789996
Q gi|254780363|r 148 VTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMIC 227 (264)
Q Consensus 148 L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiC 227 (264)
|+|++|..++-+..+.+.. . ++ +....+. + ....+|+|
T Consensus 159 l~~s~r~~d~~~~~d~l~~----------~-------------p~--~~~~~~l-~----------------~t~d~YlC 196 (220)
T cd06197 159 LLWSLREDDLPLVMDTLVR----------F-------------PG--LPVSTTL-F----------------ITSEVYLC 196 (220)
T ss_pred EEEECCCCCHHHHHHHHHH----------C-------------CC--CCCCCCC-C----------------CCCCEEEE
T ss_conf 9993564104679998743----------6-------------47--4334445-4----------------45319998
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
Q ss_conf 89899999999999869853156799509999876
Q gi|254780363|r 228 GSPTMIVDMKDLLIAKKFREGSNSRPGTFVVERAF 262 (264)
Q Consensus 228 Gpp~Mi~~v~~~L~~~G~~~~~~~~~g~~~~E~~~ 262 (264)
||++|++++.+.|.+ .+|++|. |
T Consensus 197 GP~~fm~av~~~L~~-----------erIh~E~-F 219 (220)
T cd06197 197 GPPALEKAVLEWLEG-----------KKVHRES-F 219 (220)
T ss_pred CCHHHHHHHHHHHCC-----------CCEEECC-C
T ss_conf 999999999976430-----------7778286-6
No 51
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=8e-29 Score=212.53 Aligned_cols=212 Identities=17% Similarity=0.220 Sum_probs=158.1
Q ss_pred CCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCE-EEEEEEEECCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf 6531068988884799869999807789983997179999843985-887665422857688605899994388856610
Q gi|254780363|r 10 VNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGR-RISRAYSMASPCWDDKLEFFSIKVEQGPLTTHL 88 (264)
Q Consensus 10 ~~~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~-~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L 88 (264)
..+|..+|+.+++.+.+++.++.....++.|+||||+-++++.++. .-.+|||||++....+++|. ||+- |-.|..|
T Consensus 213 s~~y~~~vt~~~r~~~~t~eit~~l~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~sel~Fs-IK~L-GD~Tk~l 290 (438)
T COG4097 213 SFPYLGKVTAPQRGNVDTLEITIGLQGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSHEGSELRFS-IKAL-GDFTKTL 290 (438)
T ss_pred CCCCCEEEECHHHCCCCHHEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCEEEEE-EHHH-HHHHHHH
T ss_conf 6566547742432684241033224786413677458998434456688998235307888669997-0331-0166788
Q ss_pred C-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 0-123885100257887321643223586699997586727789988763410357857999951998898733566898
Q gi|254780363|r 89 Q-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHE 167 (264)
Q Consensus 89 ~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~ 167 (264)
+ |+|+|+++.++| |+|.|..++..+ +-|.||||+|||||+||++.+...+....+.|+|++|+.+|..|.+++...
T Consensus 291 ~dnLk~G~k~~vdG-PYG~F~~~~g~~--~QVWIAGGIGITPFis~l~~l~~~~s~~~V~L~Y~~~n~e~~~y~~eLr~~ 367 (438)
T COG4097 291 KDNLKVGTKLEVDG-PYGKFDFERGLN--TQVWIAGGIGITPFISMLFTLAERKSDPPVHLFYCSRNWEEALYAEELRAL 367 (438)
T ss_pred HHHCCCCCEEEEEC-CCCEEECCCCCC--CCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 87356886588856-853156114774--527983476750699999862422358966999983588416899999999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHH-CCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 98644577740588438982045444446567754311047885289988731-37899968989999999999986985
Q gi|254780363|r 168 ISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPD-TDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~-~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
.+.. .+.++|. . |...+|++ .-..++ .. .+.. ...||.|||++|+++++..|+..+++
T Consensus 368 ~qkl------~~~~lHi--i----DSs~~g~l----~~e~le----r~-~~~~~~~sv~fCGP~~m~dsL~r~l~~~~~~ 426 (438)
T COG4097 368 AQKL------PNVVLHI--I----DSSKDGYL----DQEDLE----RY-PDRPRTRSVFFCGPIKMMDSLRRDLKKQNVP 426 (438)
T ss_pred HHCC------CCEEEEE--E----CCCCCCCC----CHHHHH----CC-CCCCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 7228------9738998--4----37888766----877753----25-3446761289976888999999998871997
Q ss_pred C
Q ss_conf 3
Q gi|254780363|r 247 E 247 (264)
Q Consensus 247 ~ 247 (264)
-
T Consensus 427 i 427 (438)
T COG4097 427 I 427 (438)
T ss_pred H
T ss_conf 7
No 52
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.96 E-value=9.2e-28 Score=205.44 Aligned_cols=208 Identities=17% Similarity=0.242 Sum_probs=152.1
Q ss_pred EEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEEEEECCCEEEEEEEEECCCC-CCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 68988884799869999807789-983997179999843985887665422857-6886058999943888566100123
Q gi|254780363|r 15 ESVISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRRISRAYSMASPC-WDDKLEFFSIKVEQGPLTTHLQNIQ 92 (264)
Q Consensus 15 ~~V~~v~~~t~~~~~~~l~~~~~-~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p-~~~~le~~i~~v~~G~~S~~L~~l~ 92 (264)
.+|++.+++++++|.++|..|.- -.++||||++|.++..++ +||+||++.. .++.++|+.+.| |+.|.+|++++
T Consensus 2 ~kIl~n~~l~~~~~~l~l~ap~ia~~~~PGQFvmv~~~~~~~--r~P~Si~~~d~~~g~i~~~~~vv--G~gT~~L~~l~ 77 (281)
T PRK06222 2 YKIVEKEELAPNVFLMEIEAPRVAKKAKPGQFVIVRIDEKGE--RIPLTIADYDPEKGTITIVFQAV--GKSTKELAELK 77 (281)
T ss_pred CEEEEEEEECCCEEEEEEECHHHHHHCCCCCEEEEEECCCCC--CEEEEEEEECCCCCEEEEEEEEE--CHHHHHHHHCC
T ss_conf 479987995498799999885257138999369999799997--20158888718899999999998--85899997177
Q ss_pred CCCEE-ECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 88510-025788732-1643223586699997586727789988763410357857999951998898733566898986
Q gi|254780363|r 93 PGDTI-LLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQ 170 (264)
Q Consensus 93 ~Gd~i-~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~ 170 (264)
+||+| .+.| |.|. |.++ +.+++++||||+|+||++.+++++... ..++.+++|+|+.+++++.+++..+
T Consensus 78 ~Gd~i~~i~G-PlG~~f~~~---~~~~~llVgGGiGiAPl~~lak~l~~~--g~~v~~~~G~r~~~~l~~~~~~~~~--- 148 (281)
T PRK06222 78 EGDSILDVVG-PLGKPSEIE---KFGTVVCVGGGVGIAPVYPIAKALKEA--GNKVITIIGARNKDLLILEDEMKAV--- 148 (281)
T ss_pred CCCEEEEEEC-CCCCCCCCC---CCCEEEEECCCCCCCCHHHHHHHHHHC--CCCEEEEECCCCHHHEEHHHHHHHH---
T ss_conf 9999836783-798870456---785399995843312279999999974--9916999756976870119999973---
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 44577740588438982045444446567754311047885289988731378999689899999999999869853156
Q gi|254780363|r 171 DEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSN 250 (264)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~ 250 (264)
..++.. +..+.+..++|++|+.+.. .+. . ....+.+|.|||++|++++.+++.+.|+.
T Consensus 149 --------~~~~~v--~TdDGS~G~~G~Vtd~l~~-~l~------~-~~~~d~v~~CGP~~Mmk~v~~~~~~~~v~---- 206 (281)
T PRK06222 149 --------SDELYV--TTDDGSYGFKGFVTDLLKE-LLE------S-GEKVDRVFAIGPVIMMKAVAELTKPYGIK---- 206 (281)
T ss_pred --------CCEEEE--ECCCCCCCCCCCHHHHHHH-HHH------C-CCCCCEEEEECCHHHHHHHHHHHHHCCCC----
T ss_conf --------791899--8268988852205689999-874------4-67753899989999999999999876997----
Q ss_pred CCCCEEEEEE
Q ss_conf 7995099998
Q gi|254780363|r 251 SRPGTFVVER 260 (264)
Q Consensus 251 ~~~g~~~~E~ 260 (264)
.+++.|+
T Consensus 207 ---~~vSLE~ 213 (281)
T PRK06222 207 ---TIVSLNP 213 (281)
T ss_pred ---EEEECCC
T ss_conf ---9996545
No 53
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.96 E-value=5.8e-28 Score=206.78 Aligned_cols=203 Identities=16% Similarity=0.249 Sum_probs=145.4
Q ss_pred CEEEEEEEC--CCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC--CCEEEEEEEEC---------CCCCCCCCCCCC
Q ss_conf 869999807--78998399717999984398588766542285768--86058999943---------888566100123
Q gi|254780363|r 26 RLFRFCITR--PKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD--DKLEFFSIKVE---------QGPLTTHLQNIQ 92 (264)
Q Consensus 26 ~~~~~~l~~--~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~--~~le~~i~~v~---------~G~~S~~L~~l~ 92 (264)
+++.+.|.. +..++|.+||++.|- + .+....|.|||||+|.. +.+++.+..|. .|.+|+||++++
T Consensus 16 ~~~h~e~d~~~~~~~~y~~Gd~lgv~-p-~~Pl~pR~YSIsSsp~~~p~~i~l~v~vv~~~~~~g~~~~GvcS~yL~~l~ 93 (267)
T cd06182 16 STRHLEFDLSGNSVLKYQPGDHLGVI-P-PNPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQ 93 (267)
T ss_pred EEEEEEEECCCCCCCCCCCCCEEEEE-C-CCCCCCCCEEECCCCCCCCCEEEEEEEEEEEECCCCCEEEEEEHHHHCCCC
T ss_conf 06999997689987860789989997-8-999987606203788799697999999999888999992054013551699
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH----CCCCCEEEEEECCCH-HHHHHHHHHHHH
Q ss_conf 885100257887321643223586699997586727789988763410----357857999951998-898733566898
Q gi|254780363|r 93 PGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTY----EKFDEVIVTQTCRQV-VELQYGIDVMHE 167 (264)
Q Consensus 93 ~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~----~~~~~i~L~~g~R~~-~dl~y~~~l~~~ 167 (264)
+||+|.+..++...|.+... +..++||||.|||||||+|+|++.... ...++++||||+|++ .|++|.+++..+
T Consensus 94 ~g~~v~~~i~~~~~F~lP~~-~~~PiImIg~GTGiAPfr~flq~r~~~~~~~~~~g~~~LffGcR~~~~D~lY~~El~~~ 172 (267)
T cd06182 94 LGAKVTVFIRPAPSFRLPKD-PTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEA 172 (267)
T ss_pred CCCEEEEEECCCCCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHH
T ss_conf 97989999716986789888-89988999478660678999999999874366767679997158865440699999999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECC-HHHHHHHHHHHHHC
Q ss_conf 98644577740588438982045444446567754311047885289988731378999689-89999999999986
Q gi|254780363|r 168 ISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGS-PTMIVDMKDLLIAK 243 (264)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGp-p~Mi~~v~~~L~~~ 243 (264)
.... ...++..+.||++...+-+|++.+.... +.. +.-+ .++.++||||+ ..|-.+|.+.|.+.
T Consensus 173 ~~~g--------~l~~l~~AfSRd~~~~k~YVQd~i~e~~-~~v--~~ll-~~~a~iYvCG~~~~M~~~V~~~l~~i 237 (267)
T cd06182 173 LKDG--------ALTRLDVAFSREQAEPKVYVQDKLKEHA-EEL--RRLL-NEGAHIYVCGDAKSMAKDVEDALVKI 237 (267)
T ss_pred HHCC--------CCCEEEEEECCCCCCCCCHHHHHHHHHH-HHH--HHHH-HCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8679--------9746989963578777500668999989-999--9999-77979999788321068999999999
No 54
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.96 E-value=1.3e-27 Score=204.36 Aligned_cols=200 Identities=18% Similarity=0.221 Sum_probs=149.4
Q ss_pred EEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEEEEECCCEEEEEEEEECCC-CCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 8988884799869999807789-98399717999984398588766542285-768860589999438885661001238
Q gi|254780363|r 16 SVISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRRISRAYSMASP-CWDDKLEFFSIKVEQGPLTTHLQNIQP 93 (264)
Q Consensus 16 ~V~~v~~~t~~~~~~~l~~~~~-~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~-p~~~~le~~i~~v~~G~~S~~L~~l~~ 93 (264)
+|++.+++|++++.|+|..|.- -.++||||+.|+++..++ +||+||++. +.++.++|+++.| |..|.+|+++++
T Consensus 2 kI~~~~~i~~~~~~l~l~ap~~a~~~~PGQFvml~~~~~~e--r~P~Si~~~d~~~g~i~~~~~~v--G~gT~~L~~l~~ 77 (248)
T cd06219 2 KILEKEELAPNVKLFEIEAPLIAKKAKPGQFVIVRADEKGE--RIPLTIADWDPEKGTITIVVQVV--GKSTRELATLEE 77 (248)
T ss_pred EEEEEEEECCCEEEEEEECCCHHHHCCCCCEEEEEECCCCC--EEEEEEEEECCCCCEEEEEEEEE--CCHHHHHHCCCC
T ss_conf 68789992598899999870847508998179999799996--44289888769999999999963--905989961889
Q ss_pred CCEE-ECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 8510-025788732-16432235866999975867277899887634103578579999519988987335668989864
Q gi|254780363|r 94 GDTI-LLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171 (264)
Q Consensus 94 Gd~i-~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~ 171 (264)
||++ .+.| |.|. |.++ +.+++++||||+|+||++.+++++.. ...+++++||+|+.+++++.+++...
T Consensus 78 Gd~l~~v~G-PlG~~f~~~---~~~~~llVaGGiG~APl~~la~~l~~--~g~~v~~i~G~r~~~~~~~~~~~~~~---- 147 (248)
T cd06219 78 GDKIHDVVG-PLGKPSEIE---NYGTVVFVGGGVGIAPIYPIAKALKE--AGNRVITIIGARTKDLVILEDEFRAV---- 147 (248)
T ss_pred CCEEEEEEC-CCCCCCCCC---CCCEEEEECCCEECCCHHHHHHHHHH--CCCEEEEEECCCCHHHCCCHHHHHHH----
T ss_conf 998837874-688874507---89619998473522535999999998--79958999579997985109898740----
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 457774058843898204544444656775431104788528998873137899968989999999999986985
Q gi|254780363|r 172 EILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 172 ~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
..++.+ +..+.+..++|++++.+.. .+. . ....+.+|.|||++|++++.+++.+.|+.
T Consensus 148 -------~~~~~~--~tddgs~g~~G~vt~~l~~-~l~-----~--~~~~d~i~~cGP~~Mm~~v~~~~~~~~~~ 205 (248)
T cd06219 148 -------SDELII--TTDDGSYGEKGFVTDPLKE-LIE-----S--GEKVDLVIAIGPPIMMKAVSELTRPYGIP 205 (248)
T ss_pred -------CCEEEE--ECCCCCCCCCCCHHHHHHH-HHH-----C--CCCCCEEEEECCHHHHHHHHHHHHHCCCC
T ss_conf -------876999--8578888851401068999-874-----5--67864899849999999999999862983
No 55
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.95 E-value=2.1e-26 Score=196.33 Aligned_cols=186 Identities=22% Similarity=0.386 Sum_probs=131.8
Q ss_pred CCEEEEEEECCCCCCCCCCCEEEEEEECC-CEEEEEEEEECCCCCC--CCEEEEEEEECCCCCCCCC-CCCCC----CC-
Q ss_conf 98699998077899839971799998439-8588766542285768--8605899994388856610-01238----85-
Q gi|254780363|r 25 DRLFRFCITRPKSFRFRSGEFVMLGLMVN-GRRISRAYSMASPCWD--DKLEFFSIKVEQGPLTTHL-QNIQP----GD- 95 (264)
Q Consensus 25 ~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~-g~~~~R~YSiaS~p~~--~~le~~i~~v~~G~~S~~L-~~l~~----Gd- 95 (264)
+++.++++..+..+.|+||||+.|.++.. +...++||||+|.|.+ +.++|++ |+.+| .|..| .++.. +.
T Consensus 10 ~~~~~l~i~~~~~~~~~pGq~v~l~~p~~~~~~~~HPFTias~p~~~~~~l~~~I-r~~~G-~t~~l~~~~~~~~~~~~~ 87 (210)
T cd06186 10 SDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLII-RAKKG-FTTRLLRKALKSPGGGVS 87 (210)
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEE-EECCC-CHHHHHHHHHHCCCCCCC
T ss_conf 9979999967998977899769999888897311377066506778997699999-95798-255899998617787774
Q ss_pred -EEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH----CCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf -100257887321643223586699997586727789988763410----357857999951998898733566898986
Q gi|254780363|r 96 -TILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTY----EKFDEVIVTQTCRQVVELQYGIDVMHEISQ 170 (264)
Q Consensus 96 -~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~----~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~ 170 (264)
++.+.| |+|.+..+. ...++++||||||||||++||++++... ...++|.|+|++|+.+++.+..+.+.....
T Consensus 88 ~~v~veG-PyG~~~~~~-~~~~~vlliaGG~GItp~ls~l~~l~~~~~~~~~~~~i~lvw~~R~~~~~~~~~~~l~~~~~ 165 (210)
T cd06186 88 LKVLVEG-PYGSSSEDL-LSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDELRAAQE 165 (210)
T ss_pred EEEEEEC-CCCCCCCCH-HHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 4999987-999986562-11781899913757036899999998600246888419999997999999999999987662
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 44577740588438982045444446567754311047885289988731378999689899999999999869853156
Q gi|254780363|r 171 DEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSN 250 (264)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~ 250 (264)
. ....+++. + -+.||+|||++|++++.+.+.+.|...
T Consensus 166 ~-----~~~~~~~i-------------y----------------------vT~v~~CGp~~m~~~~~~~~~~~~~~~--- 202 (210)
T cd06186 166 L-----EVDGEIEI-------------Y----------------------VTRVVVCGPPGLVDDVRNAVAKKGGTG--- 202 (210)
T ss_pred C-----CCCCCEEE-------------E----------------------EEEEEEECCHHHHHHHHHHHHHCCCCH---
T ss_conf 4-----44574499-------------9----------------------848999997999999999999849986---
Q ss_pred CCCCEEEEEE
Q ss_conf 7995099998
Q gi|254780363|r 251 SRPGTFVVER 260 (264)
Q Consensus 251 ~~~g~~~~E~ 260 (264)
.+++.|.
T Consensus 203 ---~~~~~E~ 209 (210)
T cd06186 203 ---VEFHEES 209 (210)
T ss_pred ---HHEEEEE
T ss_conf ---6789864
No 56
>TIGR02911 sulfite_red_B sulfite reductase, subunit B; InterPro: IPR014260 This entry represents subunit B, one of the three subunits of the anaerobic sulphite reductase of Salmonella, and close homologues from various Clostridium species, where the three-gene neighbourhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substrates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulphite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulphide gas from sulphite..
Probab=99.95 E-value=7.3e-27 Score=199.43 Aligned_cols=208 Identities=17% Similarity=0.281 Sum_probs=166.1
Q ss_pred CCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 53106898888479986999980778998399717999984398588766542285768860589999438885661001
Q gi|254780363|r 11 NVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQN 90 (264)
Q Consensus 11 ~~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~ 90 (264)
-++..++.+++++|+--|+||+. -.+.-+||||+.+.+|.-|+. |-|+|. -.++++.+.|++| |++|+.+++
T Consensus 4 lP~~~~Il~i~~HT~iey~FR~~--~~g~vkpGQF~EVSlPk~GEa---PISV~~-~Ge~~~DL~IR~V--G~VT~~~f~ 75 (261)
T TIGR02911 4 LPFKSEILEIIKHTDIEYTFRMS--YDGEVKPGQFFEVSLPKYGEA---PISVSG-IGEGYIDLTIRRV--GKVTDEVFT 75 (261)
T ss_pred CCCCHHEEEEECCCCCCEEEEEE--EEEEECCCCEEEEECCCCCCC---CEEEEC-CCCCEEEEEEECC--CCEEHHHEE
T ss_conf 76201000100368874257788--742215766699823875888---515413-6886588987213--401111200
Q ss_pred CCCCCEEECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 2388510025788732-1643223586699997586727789988763410-3578579999519988987335668989
Q gi|254780363|r 91 IQPGDTILLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTY-EKFDEVIVTQTCRQVVELQYGIDVMHEI 168 (264)
Q Consensus 91 l~~Gd~i~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~-~~~~~i~L~~g~R~~~dl~y~~~l~~~~ 168 (264)
+.+||.++++| |+|. |-+|.++ .|.|+.+|||||+||...++++.... +.-..+.++-|-+++++++|++++..|.
T Consensus 76 ~~~G~~~flRG-pYGNGf~vd~yk-~Kel~vvAGGTGvaPVkG~~~yF~~N~~e~k~l~~i~GfK~~~~iLfk~d~~~W~ 153 (261)
T TIGR02911 76 LKEGDKLFLRG-PYGNGFDVDNYK-DKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILFKEDIAEWK 153 (261)
T ss_pred ECCCCEEEEEC-CCCCCCCHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHCHHHCCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 03797269864-888985523306-8617998279776603477777530601103477997225711100077899887
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCC---CCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 86445777405884389820454444---465677543110478852899887313789996898999999999998698
Q gi|254780363|r 169 SQDEILKDLIGQKLKFYRTVTQEDYL---YKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKF 245 (264)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~s~e~~~---~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~ 245 (264)
.. ..++.|+...+.. ..|+||+++.. +.+. +.++..+.+-|||-||+.+.+.|++.|+
T Consensus 154 ~~-----------~n~~lT~D~ae~d~~~~~G~vT~~~~~------l~l~--~~~~~~~ivVGPPiM~~F~v~~lL~~G~ 214 (261)
T TIGR02911 154 EN-----------INLVLTLDEAEEDYKGNIGLVTKYIPE------LKLK--DIEEVQAIVVGPPIMMKFTVQELLKKGL 214 (261)
T ss_pred HC-----------CCEEEEEECCCCCCCCCEEEEECCCCC------CCCC--CCCEEEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 22-----------677999833677765333010200023------5412--3332579997798466788999987068
Q ss_pred CC
Q ss_conf 53
Q gi|254780363|r 246 RE 247 (264)
Q Consensus 246 ~~ 247 (264)
++
T Consensus 215 K~ 216 (261)
T TIGR02911 215 KE 216 (261)
T ss_pred CC
T ss_conf 60
No 57
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.93 E-value=1.8e-24 Score=183.45 Aligned_cols=169 Identities=17% Similarity=0.283 Sum_probs=120.4
Q ss_pred EEEEEECCCCCC--CCEEEEEEEE--------CCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 766542285768--8605899994--------3888566100-1238851002578873216432235866999975867
Q gi|254780363|r 58 SRAYSMASPCWD--DKLEFFSIKV--------EQGPLTTHLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTG 126 (264)
Q Consensus 58 ~R~YSiaS~p~~--~~le~~i~~v--------~~G~~S~~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtG 126 (264)
.|.|||||+|.. +.+.+.+-.| ..|.+|+||. .+++|++|.+.-.+...|.++. .+..++||||.|||
T Consensus 385 PR~YSIsSS~~~~p~~vhltv~vV~y~~~g~~r~G~cS~yLa~~l~~g~~v~v~i~~~~~FrLP~-d~~~PiIMIGpGTG 463 (599)
T PRK10953 385 PRLYSIASSQAEVENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPA-NPETPVIMIGPGTG 463 (599)
T ss_pred CCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCC-CCCCCEEEECCCCC
T ss_conf 74101225777789837999999997627975578647156644799987899995289878998-99997699717866
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCCCC
Q ss_conf 27789988763410357857999951998-898733566898986445777405884-3898204544444656775431
Q gi|254780363|r 127 IAPFVSVIRDPGTYEKFDEVIVTQTCRQV-VELQYGIDVMHEISQDEILKDLIGQKL-KFYRTVTQEDYLYKGRITNHIL 204 (264)
Q Consensus 127 ItP~~sii~~~~~~~~~~~i~L~~g~R~~-~dl~y~~~l~~~~~~~~~~~~~~~~~~-~~~~~~s~e~~~~~grit~~i~ 204 (264)
||||+|++++.......++.+||||||+. .|++|.+|+..+.... -+ +...+.||++.. +.+|++.|.
T Consensus 464 IAPFRsFlqeR~~~~~~G~~~LfFGcR~~~~DflY~~E~~~~~~~G---------~L~~l~~AFSRDq~~-K~YVQd~l~ 533 (599)
T PRK10953 464 IAPFRAFMQQRAADGAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEG---------VLTRIDLAWSRDQKE-KIYVQDKLR 533 (599)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCC---------CCCCEEEEECCCCCC-CCCHHHHHH
T ss_conf 1667999999885357798799965889874342899999999779---------864146797767999-871788999
Q ss_pred CCH--HHHHCCCCCCCHHCCEEEEECCH-HHHHHHHHHHHHC
Q ss_conf 104--78852899887313789996898-9999999999986
Q gi|254780363|r 205 SGE--FYRNMDLSPLNPDTDRIMICGSP-TMIVDMKDLLIAK 243 (264)
Q Consensus 205 ~g~--l~~~~~~~~~~~~~~~vyiCGpp-~Mi~~v~~~L~~~ 243 (264)
... +.+- + .+++++||||.. .|-++|.+.|.+.
T Consensus 534 e~~~~v~~~-----l-~~gA~iYVCGda~~Ma~dV~~aL~~I 569 (599)
T PRK10953 534 EQGAELWRW-----I-NDGAHIYVCGDANRMAKDVEQALLEV 569 (599)
T ss_pred HHHHHHHHH-----H-HCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 809999999-----9-86989999899753059999999999
No 58
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.92 E-value=7.6e-25 Score=185.94 Aligned_cols=173 Identities=17% Similarity=0.271 Sum_probs=122.4
Q ss_pred EEEEEEECCCCC--CCCEEEEEEEEC----------CCCCCCCCCCCCCCCEEECCC-CCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 876654228576--886058999943----------888566100123885100257-8873216432235866999975
Q gi|254780363|r 57 ISRAYSMASPCW--DDKLEFFSIKVE----------QGPLTTHLQNIQPGDTILLHK-KSTGTLVLDALIPGNRLYLFST 123 (264)
Q Consensus 57 ~~R~YSiaS~p~--~~~le~~i~~v~----------~G~~S~~L~~l~~Gd~i~i~~-~p~G~f~~d~~~~~~~lilIAg 123 (264)
..|.|||||+|. .+.+++.+..|+ .|.+|+||.++++||++.+.- +..+.|.+.. .+.+++||||.
T Consensus 160 ~PR~YSIaSSp~~~p~~v~ltv~vv~~~t~~~~~r~~GlcS~~L~~l~~g~~v~~~i~~~~~~F~lP~-d~~~PiImIgp 238 (384)
T cd06206 160 RPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHSAFRPPS-DPSTPLIMIAA 238 (384)
T ss_pred CCCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCEECCEEHHHHHHCCCCCEEEEEEECCCCCCCCCC-CCCCCEEEEEC
T ss_conf 88412011686579996899999999651689811413325878706898879999975898767999-99998899935
Q ss_pred CCCHHHHHHHHHHHHHH----CCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
Q ss_conf 86727789988763410----3578579999519988-987335668989864457774058843898204544444656
Q gi|254780363|r 124 GTGIAPFVSVIRDPGTY----EKFDEVIVTQTCRQVV-ELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGR 198 (264)
Q Consensus 124 GtGItP~~sii~~~~~~----~~~~~i~L~~g~R~~~-dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~gr 198 (264)
|||||||+|++++.... ...++++||||||+++ |.+|.+++..+... ..+....+.||+++....+
T Consensus 239 GTGIAPfr~flqeR~~~~~~~~~~g~~~LffGcR~~~~D~ly~~E~~~~~~~---------g~l~l~~AFSRd~~~k~~Y 309 (384)
T cd06206 239 GTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAA---------GVVSVRRAYSRPPGGGCRY 309 (384)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHC---------CCEEEEEEEECCCCCCCCC
T ss_conf 8670778999999999986386768769994157855226789999999867---------9859999995589999975
Q ss_pred CCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf 775431104788528998873137899968989999999999986
Q gi|254780363|r 199 ITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAK 243 (264)
Q Consensus 199 it~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~ 243 (264)
|++.+....- .. ..-+ .+++++||||+..|-++|.+.|.+.
T Consensus 310 VQd~i~e~~~-~v--~~ll-~~ga~iYVCG~~~M~~~V~~~l~~I 350 (384)
T cd06206 310 VQDRLWAERE-EV--WELW-EQGARVYVCGDGRMAPGVREVLKRI 350 (384)
T ss_pred HHHHHHHHHH-HH--HHHH-HCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 7999998499-99--9999-8798999927995478999999999
No 59
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.91 E-value=4.4e-24 Score=180.80 Aligned_cols=175 Identities=22% Similarity=0.303 Sum_probs=119.0
Q ss_pred EEEEEEECCCCC--CCCEEEEEE--EE---------CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 876654228576--886058999--94---------38885661001238851002578873216432235866999975
Q gi|254780363|r 57 ISRAYSMASPCW--DDKLEFFSI--KV---------EQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFST 123 (264)
Q Consensus 57 ~~R~YSiaS~p~--~~~le~~i~--~v---------~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAg 123 (264)
..|.|||||+|. .+.+++.+. +. ..|.+|+||.++++||+|.+.-.+...|.+.. .+..++||||.
T Consensus 176 ~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~~~~~~r~GlcS~~L~~l~~g~~v~~~vr~~~~F~lP~-d~~~PiImIg~ 254 (406)
T cd06202 176 QPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAPSFHLPE-DPSVPVIMVGP 254 (406)
T ss_pred CCEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEEHHHHHHCCCCCCEEEEEEECCCCCCCCC-CCCCCEEEEEC
T ss_conf 86026751686679987999999998664788874553011077755899798999994798788988-89998799807
Q ss_pred CCCHHHHHHHHHHHHH--------HCCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCC
Q ss_conf 8672778998876341--------03578579999519988-98733566898986445777405884-38982045444
Q gi|254780363|r 124 GTGIAPFVSVIRDPGT--------YEKFDEVIVTQTCRQVV-ELQYGIDVMHEISQDEILKDLIGQKL-KFYRTVTQEDY 193 (264)
Q Consensus 124 GtGItP~~sii~~~~~--------~~~~~~i~L~~g~R~~~-dl~y~~~l~~~~~~~~~~~~~~~~~~-~~~~~~s~e~~ 193 (264)
|||||||+|++++... ....++++||||||+++ |.+|.+|+..+... ..+ +...+.||+++
T Consensus 255 GTGiAPFR~FlqeR~~~~~~~~~~~~~~G~~~LffGcR~~~~D~ly~~El~~~~~~---------g~l~~l~~AfSRd~~ 325 (406)
T cd06202 255 GTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNK---------GVLTEVYTALSREPG 325 (406)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHC---------CCCCEEEEEEECCCC
T ss_conf 87717789999999998875542168878759996078753225589999999875---------985058998754799
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCC
Q ss_conf 446567754311047885289988731378999689899999999999869
Q gi|254780363|r 194 LYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKK 244 (264)
Q Consensus 194 ~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G 244 (264)
..+-+|++.+....- .. ..-+..+++++||||...|.++|.+.|.+.-
T Consensus 326 ~~k~YVQd~i~e~~~-~v--~~~l~~~ga~iYVCG~~~M~~~V~~~l~~i~ 373 (406)
T cd06202 326 KPKTYVQDLLKEQAE-SV--YDALVREGGHIYVCGDVTMAEDVSQTIQRIL 373 (406)
T ss_pred CCCCCHHHHHHHHHH-HH--HHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 898746899997499-99--9999819979999799824889999999999
No 60
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.90 E-value=1.5e-23 Score=177.24 Aligned_cols=173 Identities=18% Similarity=0.267 Sum_probs=121.0
Q ss_pred EEEEEEECCCCCC--CCEEEEEEEE--------CCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 8766542285768--8605899994--------3888566100-123885100257887321643223586699997586
Q gi|254780363|r 57 ISRAYSMASPCWD--DKLEFFSIKV--------EQGPLTTHLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGT 125 (264)
Q Consensus 57 ~~R~YSiaS~p~~--~~le~~i~~v--------~~G~~S~~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGt 125 (264)
..|.|||||+|.. +.+++.+..| ..|.+|+||. .+++|++|.+.-.++..|.++. .+..++||||.||
T Consensus 145 ~PR~YSIsSSp~~~p~~i~ltv~vv~~~~~~~~r~GlcS~~L~~~l~~g~~v~~~i~~~~~F~lP~-~~~~PiImIg~GT 223 (360)
T cd06199 145 QPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQPNPHFRLPE-DPDAPIIMVGPGT 223 (360)
T ss_pred CCCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCCCCCC-CCCCCEEEEECCC
T ss_conf 883001125865799869999999887579973587520888721779998899995489889998-9999869983685
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 727789988763410357857999951998-8987335668989864457774058843898204544444656775431
Q gi|254780363|r 126 GIAPFVSVIRDPGTYEKFDEVIVTQTCRQV-VELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHIL 204 (264)
Q Consensus 126 GItP~~sii~~~~~~~~~~~i~L~~g~R~~-~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~ 204 (264)
|||||+|++++....+..++.+||+|||++ .|.+|.+++..+.... .-.++..+.||++.. +.+|++.+.
T Consensus 224 GiAPfR~FlqeR~~~~~~G~~~LffGCR~~~~D~lY~~El~~~~~~g--------~l~~l~~AFSRd~~~-k~YVQd~l~ 294 (360)
T cd06199 224 GIAPFRAFLQEREATGAKGKNWLFFGERHFATDFLYQDELQQWLKDG--------VLTRLDTAFSRDQAE-KVYVQDRMR 294 (360)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC--------CCEEEEEEEECCCCC-CCCHHHHHH
T ss_conf 60878999999998258898799960578323235899999999749--------834899999458888-886789999
Q ss_pred CCHHHHHCCCCCCCHHCCEEEEECCH-HHHHHHHHHHHHC
Q ss_conf 10478852899887313789996898-9999999999986
Q gi|254780363|r 205 SGEFYRNMDLSPLNPDTDRIMICGSP-TMIVDMKDLLIAK 243 (264)
Q Consensus 205 ~g~l~~~~~~~~~~~~~~~vyiCGpp-~Mi~~v~~~L~~~ 243 (264)
... .... .-+ .+++++|+||+. .|-.+|.+.|.+.
T Consensus 295 e~~-~~v~--~ll-~~ga~iYVCG~a~~M~~~V~~~l~~i 330 (360)
T cd06199 295 EQG-AELW--AWL-EEGAHFYVCGDAKRMAKDVDAALLDI 330 (360)
T ss_pred HHH-HHHH--HHH-HCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 819-9999--999-78979999899524479999999999
No 61
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.90 E-value=2.7e-23 Score=175.60 Aligned_cols=176 Identities=19% Similarity=0.308 Sum_probs=120.3
Q ss_pred EEEEEEEECCCCCC--CCEEEEEEEE---CCCCCCCCCCCC-----CCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 88766542285768--8605899994---388856610012-----3885100257887321643223586699997586
Q gi|254780363|r 56 RISRAYSMASPCWD--DKLEFFSIKV---EQGPLTTHLQNI-----QPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGT 125 (264)
Q Consensus 56 ~~~R~YSiaS~p~~--~~le~~i~~v---~~G~~S~~L~~l-----~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGt 125 (264)
...|.|||||+|.. +.+++.+..| ..|.+|+||..+ +.|++|.+...+.+.|.+....+.+++||||.||
T Consensus 172 l~PR~YSISSSp~~~p~~v~ltv~vv~~~~~GlcS~~L~~l~~~~~~~g~~v~~~i~~~~~F~lP~~~~~~PiImIg~GT 251 (398)
T cd06203 172 LQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIMVGPGT 251 (398)
T ss_pred CCCCCCEECCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCC
T ss_conf 67744200367456998799999999718997233577751423357998799998658876789656789779981686
Q ss_pred CHHHHHHHHHHHHH------HCCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCC--CC
Q ss_conf 72778998876341------03578579999519988-98733566898986445777405884-38982045444--44
Q gi|254780363|r 126 GIAPFVSVIRDPGT------YEKFDEVIVTQTCRQVV-ELQYGIDVMHEISQDEILKDLIGQKL-KFYRTVTQEDY--LY 195 (264)
Q Consensus 126 GItP~~sii~~~~~------~~~~~~i~L~~g~R~~~-dl~y~~~l~~~~~~~~~~~~~~~~~~-~~~~~~s~e~~--~~ 195 (264)
|||||+|++++... .+..++++||+|||+++ |.+|.+|+..+.... .+ ++..+.||++. ..
T Consensus 252 GIAPfRaFlqeR~~~~~~~~~~~~g~~~LffGcR~~~~D~lY~dEl~~~~~~G---------~l~~l~~AFSRd~~~~~~ 322 (398)
T cd06203 252 GVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEG---------ILTRLIVAFSRDENDGST 322 (398)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC---------CCCEEEEEEECCCCCCCC
T ss_conf 62437999999999876212578787589971577220225899999999749---------972468999667887899
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCH-HHHHHHHHHHHHC
Q ss_conf 65677543110478852899887313789996898-9999999999986
Q gi|254780363|r 196 KGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSP-TMIVDMKDLLIAK 243 (264)
Q Consensus 196 ~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp-~Mi~~v~~~L~~~ 243 (264)
+.+|++.|....- .. +..+..++.++||||+. .|-.+|.+.|.+.
T Consensus 323 k~YVQd~i~e~~~-~v--~~~l~~~ga~iYVCG~a~~M~~~V~~al~~i 368 (398)
T cd06203 323 PKYVQDKLEERGK-KL--VDLLLNSNAKIYVCGDAKGMAKDVRDTFVDI 368 (398)
T ss_pred CCCHHHHHHHHHH-HH--HHHHHCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8534789998599-99--9999729949999799523368999999999
No 62
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.6e-23 Score=174.77 Aligned_cols=171 Identities=19% Similarity=0.288 Sum_probs=124.8
Q ss_pred EEEEEECCCCCCC--CEEEEEEEE--C------CCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 7665422857688--605899994--3------8885661001238-851002578873216432235866999975867
Q gi|254780363|r 58 SRAYSMASPCWDD--KLEFFSIKV--E------QGPLTTHLQNIQP-GDTILLHKKSTGTLVLDALIPGNRLYLFSTGTG 126 (264)
Q Consensus 58 ~R~YSiaS~p~~~--~le~~i~~v--~------~G~~S~~L~~l~~-Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtG 126 (264)
.|-|||||+|... .+++++..| + -|.+|.||.++.. ||+|.+..++.-.|.+...+ .++||||+.|||
T Consensus 373 PR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~~~-~~PiIMIG~GTG 451 (587)
T COG0369 373 PRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPEDP-ETPIIMIGPGTG 451 (587)
T ss_pred CEEEEECCCCCCCCCEEEEEEEEEEECCCCCCEEEECHHHHHHHHCCCCEEEEEECCCCCCCCCCCC-CCCEEEECCCCC
T ss_conf 7035651688888985799999997105888530002688986412798379995368751068999-986699868977
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 2778998876341035785799995199-889873356689898644577740588438982045444446567754311
Q gi|254780363|r 127 IAPFVSVIRDPGTYEKFDEVIVTQTCRQ-VVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILS 205 (264)
Q Consensus 127 ItP~~sii~~~~~~~~~~~i~L~~g~R~-~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~ 205 (264)
||||++++++....+..++.|||||+|+ ..|++|.+|+.++... +..++...+.||++. .+-+|++.+..
T Consensus 452 IAPFRafvq~r~~~~~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~--------G~~~~l~~AfSRdq~-~KiYVQd~lre 522 (587)
T COG0369 452 IAPFRAFVQERAANGAEGKNWLFFGCRHFTEDFLYQEEWEEYLKD--------GVLTRLDLAFSRDQE-EKIYVQDRLRE 522 (587)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHC--------CCCEEEEEEEEECCC-CCCCHHHHHHH
T ss_conf 253899999998646657548996588886343259999999744--------870577889960578-87618879987
Q ss_pred -C-HHHHHCCCCCCCHHCCEEEEEC-CHHHHHHHHHHHHHCC
Q ss_conf -0-4788528998873137899968-9899999999999869
Q gi|254780363|r 206 -G-EFYRNMDLSPLNPDTDRIMICG-SPTMIVDMKDLLIAKK 244 (264)
Q Consensus 206 -g-~l~~~~~~~~~~~~~~~vyiCG-pp~Mi~~v~~~L~~~G 244 (264)
+ ++.+-+ .+.+++|+|| ...|..+|.++|.+.=
T Consensus 523 ~~del~~~l------~~ga~~YVCGd~~~Ma~dV~~AL~~il 558 (587)
T COG0369 523 QADELWEWL------EEGAHIYVCGDAKGMAKDVEEALLDIL 558 (587)
T ss_pred HHHHHHHHH------HCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 389999999------779889996887555077999999999
No 63
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.90 E-value=2.4e-23 Score=175.89 Aligned_cols=173 Identities=17% Similarity=0.281 Sum_probs=118.8
Q ss_pred EEEEEEECCCCCC--CCEEEEEEEEC---------CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 8766542285768--86058999943---------888566100123885100257887321643223586699997586
Q gi|254780363|r 57 ISRAYSMASPCWD--DKLEFFSIKVE---------QGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGT 125 (264)
Q Consensus 57 ~~R~YSiaS~p~~--~~le~~i~~v~---------~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGt 125 (264)
..|.|||||+|.. +.+++.+..|. .|.+|+||.++++||+|.+.-.+. .|.++. .+..++||||.||
T Consensus 163 ~PR~YSIsSSp~~~~~~i~ltv~~v~~~t~~~~~r~GlcS~~L~~l~~g~~v~~~i~~s-~F~lP~-d~~~PiImIg~GT 240 (382)
T cd06207 163 KPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKS-SFKLPK-DPKKPIIMVGPGT 240 (382)
T ss_pred CCCEEEECCCCCCCCCEEEEEEEEEEECCCCCCEEECCHHHHHHHCCCCCEEEEEEECC-CCCCCC-CCCCCEEEEECCC
T ss_conf 76223412464569986899999987107999864050537887189999799998578-877999-9999858995697
Q ss_pred CHHHHHHHHHHHHHH----CCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 727789988763410----3578579999519988-98733566898986445777405884389820454444465677
Q gi|254780363|r 126 GIAPFVSVIRDPGTY----EKFDEVIVTQTCRQVV-ELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRIT 200 (264)
Q Consensus 126 GItP~~sii~~~~~~----~~~~~i~L~~g~R~~~-dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit 200 (264)
|||||+|+|++.... ...++++||||+|+++ |.+|.+++..+.... .-.+...+.||++.. +-+|+
T Consensus 241 GIAPfr~flqeR~~~~~~~~~~g~~~LffGcR~~~~D~lY~dEl~~~~~~g--------~l~~l~~AfSRd~~~-k~YVQ 311 (382)
T cd06207 241 GLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSG--------VLTTLGTAFSRDQPK-KVYVQ 311 (382)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCC--------CCCEEEEEEECCCCC-CCCHH
T ss_conf 716689999999999852867787699951568655652799999999749--------873599998058999-87378
Q ss_pred CCCCCCHHHHHCCCCCCCHHCCEEEEECCH-HHHHHHHHHHHHC
Q ss_conf 543110478852899887313789996898-9999999999986
Q gi|254780363|r 201 NHILSGEFYRNMDLSPLNPDTDRIMICGSP-TMIVDMKDLLIAK 243 (264)
Q Consensus 201 ~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp-~Mi~~v~~~L~~~ 243 (264)
+.+.... ... +.-+...+.++||||.. .|-++|.+.|.+.
T Consensus 312 d~l~~~~-~~v--~~~l~~~~~~iYVCG~a~~M~~~V~~~l~~i 352 (382)
T cd06207 312 DLIRENS-DLV--YQLLEEGAGVIYVCGSTWKMPPDVQEAFEEI 352 (382)
T ss_pred HHHHHHH-HHH--HHHHHCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 8999789-999--9999759989999389405579999999999
No 64
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.88 E-value=2.9e-21 Score=161.99 Aligned_cols=200 Identities=17% Similarity=0.265 Sum_probs=146.5
Q ss_pred EEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEEEEECCCEEEEEEEEECCC-CCCCCEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 8988884799869999807789-98399717999984398588766542285-768860589999438885661001238
Q gi|254780363|r 16 SVISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRRISRAYSMASP-CWDDKLEFFSIKVEQGPLTTHLQNIQP 93 (264)
Q Consensus 16 ~V~~v~~~t~~~~~~~l~~~~~-~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~-p~~~~le~~i~~v~~G~~S~~L~~l~~ 93 (264)
+|++.+++++++|.|.++.|.- -.-+||||+.|++...|+ ++|.|||.. +..+.+++....| |+-|.+|.++++
T Consensus 3 kIl~k~~La~~v~~~~i~AP~IA~~akPGQFVivr~~e~gE--RiPltIad~D~e~gtitiv~q~v--G~sT~~L~~l~~ 78 (760)
T PRK12778 3 KIISKEHFSEKVFKLVIEAPLIAKSRKAGHFVIVRVGEKGE--RMPLTIAGADPKKGTITLVVQEV--GLSSTRLCELNE 78 (760)
T ss_pred HHHHHHCCCCCEEEEEEECHHHHHHCCCCCEEEEEECCCCC--CCCEEEEEEECCCCEEEEEEEEE--CHHHHHHHCCCC
T ss_conf 32100314776089999886888458999769998589985--33206564607899799999996--856999962789
Q ss_pred CCEE-ECCCCCCC-CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 8510-02578873-216432235866999975867277899887634103578579999519988987335668989864
Q gi|254780363|r 94 GDTI-LLHKKSTG-TLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171 (264)
Q Consensus 94 Gd~i-~i~~~p~G-~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~ 171 (264)
||.+ .+.| |.| .|.++. .+++++|+||+|+||++.+++.+.. ...+++.++|+|+.+.+++.+++..
T Consensus 79 Gd~i~dvvG-PLG~p~~i~~---~g~vv~VgGGvG~Ap~~piakalk~--~Gn~v~~I~Gar~k~~vilede~~~----- 147 (760)
T PRK12778 79 GDYITDVVG-PLGQATHIEN---FGTVVCAGGGVGVAPMLPIVQALKA--AGNRVITVLAGRSKELIILEKEMRE----- 147 (760)
T ss_pred CCEEEEEEC-CCCCCCCCCC---CCEEEEEECCEEHHHHHHHHHHHHH--CCCEEEEEEECCCHHHEEHHHHHHH-----
T ss_conf 987725565-7999805677---8739999586968987999999998--6995999984266334035999997-----
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 4577740588438982045444446567754311047885289988731378999689899999999999869853
Q gi|254780363|r 172 EILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 172 ~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264)
...++.+ +..+.+...+|.+|+.+. ++.+. . .-+.+|.|||.+||+.+.++-++.|++-
T Consensus 148 ------~~d~~~i--tTDDGS~G~kG~VT~~L~--~ll~~---~----~~D~v~aiGP~~MMk~v~~~t~~~~i~t 206 (760)
T PRK12778 148 ------SSDEVII--MTDDGSYGRKGLVTEGVE--EVIKR---E----KVNKCFAIGPAIMMKFVCLLTKKYEIPT 206 (760)
T ss_pred ------HCCEEEE--ECCCCCCCCCCEECHHHH--HHHHC---C----CCCEEEEECCHHHHHHHHHHHCCCCCCE
T ss_conf ------4386999--858999972745667799--99748---8----9878999797899999998726058974
No 65
>KOG1158 consensus
Probab=99.88 E-value=1.4e-22 Score=170.71 Aligned_cols=174 Identities=20% Similarity=0.271 Sum_probs=116.7
Q ss_pred EEEEEEECCCCCC--CCEEEEEEEE----CC------CCCCCCCCCCCCCCEEE--CCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 8766542285768--8605899994----38------88566100123885100--257887321643223586699997
Q gi|254780363|r 57 ISRAYSMASPCWD--DKLEFFSIKV----EQ------GPLTTHLQNIQPGDTIL--LHKKSTGTLVLDALIPGNRLYLFS 122 (264)
Q Consensus 57 ~~R~YSiaS~p~~--~~le~~i~~v----~~------G~~S~~L~~l~~Gd~i~--i~~~p~G~f~~d~~~~~~~lilIA 122 (264)
..|.|||+|+|.- ..+.+.+.-| ++ |.+|+||.++++|+.+. +-..+.. |.++. .|..++||||
T Consensus 421 ~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~-frlp~-dp~~PiIMIG 498 (645)
T KOG1158 421 QPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSM-FRLPS-DPSTPIIMIG 498 (645)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEHHHHHHHCCCCCCCCCCEEECCCC-EECCC-CCCCCEEEEC
T ss_conf 565411356755688878999999651367888762123136687447755567643555523-01599-9999679983
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC-----CEEEEEECCCHHHH-HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
Q ss_conf 5867277899887634103578-----57999951998898-73356689898644577740588438982045444446
Q gi|254780363|r 123 TGTGIAPFVSVIRDPGTYEKFD-----EVIVTQTCRQVVEL-QYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYK 196 (264)
Q Consensus 123 gGtGItP~~sii~~~~~~~~~~-----~i~L~~g~R~~~dl-~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~ 196 (264)
.|||||||+|++++.......+ .+|||||||+.++. +|.+|+..+... ...++...+.||++...+
T Consensus 499 pGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d~LY~eE~~~~~~~--------~~l~~l~~A~SReq~~~k 570 (645)
T KOG1158 499 PGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDEDYLYREEWEEYKKA--------GILTRLDVAFSREQTPKK 570 (645)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC--------CCCHHHEEEEECCCCCCC
T ss_conf 787613049999999986521766786559998278824888889999988746--------840122146502678870
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHH-HHHHHHHHHHHC
Q ss_conf 56775431104788528998873137899968989-999999999986
Q gi|254780363|r 197 GRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPT-MIVDMKDLLIAK 243 (264)
Q Consensus 197 grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~-Mi~~v~~~L~~~ 243 (264)
-+|++.+.. .-.+ .+..+..++.++|+||... |.++|.++|.+.
T Consensus 571 ~YVQd~l~e-~~d~--v~~~L~~~~g~iYvCGd~~~Ma~dV~~~L~~i 615 (645)
T KOG1158 571 IYVQDRLRE-YADE--VWELLKKEGGHIYVCGDAKGMAKDVQDALVRI 615 (645)
T ss_pred EEHHHHHHH-HHHH--HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 351659998-7999--99998458968999668763157799999999
No 66
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.87 E-value=1.8e-21 Score=163.41 Aligned_cols=172 Identities=19% Similarity=0.345 Sum_probs=113.9
Q ss_pred EEEEEEECCCCC--CCCEEEEEEEE---------CCCCCCCCCCCCCC---------------------CCEEECCCCCC
Q ss_conf 876654228576--88605899994---------38885661001238---------------------85100257887
Q gi|254780363|r 57 ISRAYSMASPCW--DDKLEFFSIKV---------EQGPLTTHLQNIQP---------------------GDTILLHKKST 104 (264)
Q Consensus 57 ~~R~YSiaS~p~--~~~le~~i~~v---------~~G~~S~~L~~l~~---------------------Gd~i~i~~~p~ 104 (264)
..|.|||||+|. .+.+++.+..| ..|.+|+||.++++ |++|.+.-.+
T Consensus 177 ~PR~YSIsSSp~~~p~~v~ltv~vv~~~~~~~~~~~GlcS~~L~~l~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~ir~- 255 (416)
T cd06204 177 QPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRR- 255 (416)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC-
T ss_conf 7740002467446999699999999844599973020013667623422234433444433444334678658999834-
Q ss_pred CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH----CCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 321643223586699997586727789988763410----3578579999519988-98733566898986445777405
Q gi|254780363|r 105 GTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTY----EKFDEVIVTQTCRQVV-ELQYGIDVMHEISQDEILKDLIG 179 (264)
Q Consensus 105 G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~----~~~~~i~L~~g~R~~~-dl~y~~~l~~~~~~~~~~~~~~~ 179 (264)
+.|.+... +..++||||.|||||||+|+|++.... ...++++||+|||+++ |.+|.+|+..+....
T Consensus 256 s~F~LP~~-~~~PiIMIgpGTGiAPFr~FlqeR~~~~~~~~~~G~~~LffGcR~~~~D~lY~~El~~~~~~g-------- 326 (416)
T cd06204 256 SNFRLPTK-PSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIYKDELEEYAKLG-------- 326 (416)
T ss_pred CCCCCCCC-CCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCC--------
T ss_conf 76668988-888769981686618789999999999851876576699952688652415899999999759--------
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECC-HHHHHHHHHHHHHC
Q ss_conf 88438982045444446567754311047885289988731378999689-89999999999986
Q gi|254780363|r 180 QKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGS-PTMIVDMKDLLIAK 243 (264)
Q Consensus 180 ~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGp-p~Mi~~v~~~L~~~ 243 (264)
.-.++..+.||++.. +.+|++.+.... +.... -+ .+++++||||+ ..|-++|.+.|.+.
T Consensus 327 ~l~~l~~AFSRd~~~-k~YVQd~i~e~~-~~v~~--ll-~~ga~iYVCG~a~~M~~~V~~~l~~i 386 (416)
T cd06204 327 GLLELVTAFSREQPK-KVYVQHRLAEHA-EQVWE--LI-NEGAYIYVCGDAKNMARDVEKTLLEI 386 (416)
T ss_pred CCEEEEEEEECCCCC-CCCHHHHHHHHH-HHHHH--HH-HCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 945999899578988-885799999719-99999--99-87979999899641158999999999
No 67
>KOG3378 consensus
Probab=99.86 E-value=7.9e-22 Score=165.75 Aligned_cols=214 Identities=16% Similarity=0.211 Sum_probs=139.0
Q ss_pred CCCEEEEEEEECCCCEEEEEEECCCC-C---CCCCCCEEEEEEECCCEE----EEEEEEECCCCCCCCEEEEEEEECCCC
Q ss_conf 31068988884799869999807789-9---839971799998439858----876654228576886058999943888
Q gi|254780363|r 12 VYCESVISIKHYTDRLFRFCITRPKS-F---RFRSGEFVMLGLMVNGRR----ISRAYSMASPCWDDKLEFFSIKVEQGP 83 (264)
Q Consensus 12 ~~~~~V~~v~~~t~~~~~~~l~~~~~-~---~f~~GQ~v~i~~~~~g~~----~~R~YSiaS~p~~~~le~~i~~v~~G~ 83 (264)
...-+|++...++.|+.+|++.+-.+ | +-.||||+.+-..+.|.. -.|+||.+++...+.+.|-++++.+|.
T Consensus 149 ~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~G~ 228 (385)
T KOG3378 149 EVEFKVTELINESSDVKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAGGV 228 (385)
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEHHCHH
T ss_conf 56545432100135516898558885413225899846898612776301688988876404664155268875011105
Q ss_pred CCCCCC-CCCCCCEEECCCCCCCCCCCCCC--CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHH
Q ss_conf 566100-12388510025788732164322--358669999758672778998876341035785799995199889873
Q gi|254780363|r 84 LTTHLQ-NIQPGDTILLHKKSTGTLVLDAL--IPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQY 160 (264)
Q Consensus 84 ~S~~L~-~l~~Gd~i~i~~~p~G~f~~d~~--~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y 160 (264)
+|+++| ++|+||.|.+++ |-|+|.+... ..+++++++|||+||||++.||++.. +.|++|-..-
T Consensus 229 VS~~~H~~~KVGD~v~~S~-PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~---------~C~~~RP~~~--- 295 (385)
T KOG3378 229 VSNFVHDNLKVGDIVGVSP-PAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETAL---------LCYSSRPFKQ--- 295 (385)
T ss_pred HHHHHHCCCCCCCEEECCC-CCCCCEEEHHHHCCCCCEEEECCCCCCCCCHHHHHHHH---------HCCCCCCHHH---
T ss_conf 6877602443355330168-87663200234436875588637767541089999887---------4078986799---
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHH
Q ss_conf 35668989864457774058843898204544444656775431104788528998873137899968989999999999
Q gi|254780363|r 161 GIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLL 240 (264)
Q Consensus 161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L 240 (264)
.+... +..+..+++..-..+.|...-.-.|-+.. ..++.+.-.+..+++..+.+|.|||-.+|++|++.|
T Consensus 296 --~~~~~-------~~K~k~~~K~~e~~~~E~s~~~~~IV~~~-~~~iI~~~~L~~~~~s~~DiY~~G~~~~M~~~~~~L 365 (385)
T KOG3378 296 --WLEQL-------KLKYKENLKLKEFFSEESSVTKEQIVDEV-MTRIINEEDLEKLDLSECDIYMLGPNNYMRFVKQEL 365 (385)
T ss_pred --HHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHCCHHHHHHCCHHHCCEEEECCHHHHHHHHHHH
T ss_conf --99998-------89899889899999876512103331002-353058988623683117566637389999999999
Q ss_pred HHCCCCCC
Q ss_conf 98698531
Q gi|254780363|r 241 IAKKFREG 248 (264)
Q Consensus 241 ~~~G~~~~ 248 (264)
+++|.+.+
T Consensus 366 ~~L~~~~~ 373 (385)
T KOG3378 366 VKLGVEPN 373 (385)
T ss_pred HHHCCCCC
T ss_conf 98467866
No 68
>PRK06214 sulfite reductase; Provisional
Probab=99.86 E-value=2.7e-21 Score=162.17 Aligned_cols=221 Identities=15% Similarity=0.198 Sum_probs=150.9
Q ss_pred CCCCCCCCEEEEEEEECCC-----CEEEEEEECC-CCCCCCCCCEEEEEEECCC--------------------------
Q ss_conf 4366531068988884799-----8699998077-8998399717999984398--------------------------
Q gi|254780363|r 7 KLPVNVYCESVISIKHYTD-----RLFRFCITRP-KSFRFRSGEFVMLGLMVNG-------------------------- 54 (264)
Q Consensus 7 ~~p~~~~~~~V~~v~~~t~-----~~~~~~l~~~-~~~~f~~GQ~v~i~~~~~g-------------------------- 54 (264)
.--.++|.++|+..+.+|. ++..+.+... .++.|+||.++-|. |.|.
T Consensus 170 ~sk~nP~~A~l~~n~~Lt~~gS~KetrHiE~dl~gSgl~Y~~GDaLgV~-P~N~p~lV~~~l~~lgl~~d~~v~~~~L~e 248 (537)
T PRK06214 170 YSRDNPVEATFLSRRRLNKPGSEKETWHIEFDLEGSGIDYEVGDSFGLF-PANDPALVDAVIAALGAPPEFPIAGKTLRE 248 (537)
T ss_pred CCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEE-ECCCHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 6767985325530022068998844799999618998830689978996-169999999999985889874127733999
Q ss_pred -----------------------------------------------------------------------EEEEEEEEE
Q ss_conf -----------------------------------------------------------------------588766542
Q gi|254780363|r 55 -----------------------------------------------------------------------RRISRAYSM 63 (264)
Q Consensus 55 -----------------------------------------------------------------------~~~~R~YSi 63 (264)
....|.|||
T Consensus 249 aL~~~~~i~~~~~~l~~~~a~~~~~~~~~~l~~l~~~~~~~~~~~~~~vld~L~~fp~~~~~~~~ll~~L~pL~PR~YSI 328 (537)
T PRK06214 249 ALLDDVSLKPAPDMLFQLISYITGGARRKKARALAAGEDPDGDAATLDVLAALEKFPGIRPDPEAFVEALDPLQPRLYSI 328 (537)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEC
T ss_conf 98532314589889999999982873349999764355702345328899999867567999999997514678723320
Q ss_pred CCCCCC--CCEEEEEEEE--------CCCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
Q ss_conf 285768--8605899994--------3888566100-1238851002578873216432235866999975867277899
Q gi|254780363|r 64 ASPCWD--DKLEFFSIKV--------EQGPLTTHLQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVS 132 (264)
Q Consensus 64 aS~p~~--~~le~~i~~v--------~~G~~S~~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~s 132 (264)
||+|.. +.+.+.+-.| ..|.+|+||. ++++|++|.|--.+...|.+.. .+..++|||+.|||||||++
T Consensus 329 SSSp~~~p~~VhLTV~vVry~~~gr~R~Gv~StyLadrl~~g~~V~vfv~~~~~FrlP~-d~~~PiIMIGpGTGiAPFR~ 407 (537)
T PRK06214 329 SSSPKATPGRLSLTVDAVRYEIGKRLRLGVASTFLGERVAPGTKVRVYVQKAHGFALPA-DPNTPIIMVGPGTGIAPFRA 407 (537)
T ss_pred CCCCCCCCCEEEEEEEEEEEECCCCCCCCEECHHHHHCCCCCCEEEEEEEECCCCCCCC-CCCCCEEEECCCCCCHHHHH
T ss_conf 47866799967999999985169841487625323302689997899984378866898-99987489647877277899
Q ss_pred HHHHHHHHCCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 887634103578579999519988-98733566898986445777405884-3898204544444656775431104788
Q gi|254780363|r 133 VIRDPGTYEKFDEVIVTQTCRQVV-ELQYGIDVMHEISQDEILKDLIGQKL-KFYRTVTQEDYLYKGRITNHILSGEFYR 210 (264)
Q Consensus 133 ii~~~~~~~~~~~i~L~~g~R~~~-dl~y~~~l~~~~~~~~~~~~~~~~~~-~~~~~~s~e~~~~~grit~~i~~g~l~~ 210 (264)
++++....+..++.|||+|+|+.+ |++|++++..+.... .+ +.....||++.. +-+|++.+.... .+
T Consensus 408 FlqeR~a~~~~G~~wLfFG~r~~~~DflY~~E~~~~~~~G---------~Lt~l~~AfSRdq~~-KvYVQdri~e~~-~~ 476 (537)
T PRK06214 408 FLHERAATKAPGRNWLFFGHQRSATDFFYEDELNGMKTAG---------VLTRLSLAWSRDGGE-KTYVQDRMRENG-RE 476 (537)
T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCC---------CCCEEEEEECCCCCC-CCCHHHHHHHHH-HH
T ss_conf 9999996138887389874456888821399999999669---------863057797668999-770788999829-99
Q ss_pred HCCCCCCCHHCCEEEEECC-HHHHHHHHHHHHHC
Q ss_conf 5289988731378999689-89999999999986
Q gi|254780363|r 211 NMDLSPLNPDTDRIMICGS-PTMIVDMKDLLIAK 243 (264)
Q Consensus 211 ~~~~~~~~~~~~~vyiCGp-p~Mi~~v~~~L~~~ 243 (264)
.. .+-.+..++||||. ..|-++|.+.|.+.
T Consensus 477 v~---~~l~~Ga~iYVCGda~~Ma~dV~~aL~~i 507 (537)
T PRK06214 477 LW---AWLEEGAHFYVCGDAKRMAKDVERALVDI 507 (537)
T ss_pred HH---HHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99---99987989999789643069999999999
No 69
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component; InterPro: IPR010199 This entry describes an NADPH-dependent sulphite reductase flavoprotein subunit. Most members of the proteins of this entry are found in Cys biosynthesis gene clusters. The closest homologues are designated as subunits nitrate reductase.; GO: 0004783 sulfite reductase (NADPH) activity, 0000103 sulfate assimilation, 0019344 cysteine biosynthetic process.
Probab=99.86 E-value=3.2e-22 Score=168.42 Aligned_cols=193 Identities=17% Similarity=0.250 Sum_probs=132.8
Q ss_pred CCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCC----CEEEEEEEE------CCCCCCCCCCC-CCCCCEEECCCCCCC
Q ss_conf 9983997179999843985887665422857688----605899994------38885661001-238851002578873
Q gi|254780363|r 37 SFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDD----KLEFFSIKV------EQGPLTTHLQN-IQPGDTILLHKKSTG 105 (264)
Q Consensus 37 ~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~----~le~~i~~v------~~G~~S~~L~~-l~~Gd~i~i~~~p~G 105 (264)
+.+..|=|++.| |. ....|-|||||+-.+- +|..-.++. .-|.+|.+|.. |++||+|.|=-.+.-
T Consensus 397 p~~l~a~~li~l-LR---PL~PRLYSIaSSq~ev~dEVHlTVg~V~y~~~G~~r~GgaS~fLA~rl~~gd~v~vyve~N~ 472 (628)
T TIGR01931 397 PADLDAEQLISL-LR---PLTPRLYSIASSQAEVDDEVHLTVGVVRYEAEGRARLGGASGFLAERLEEGDTVKVYVERND 472 (628)
T ss_pred CCCCCHHHHHHH-HC---CCCCCHHHHHHHHHHCCCEEEEEEEEEEEEECCEEEECCCHHHHHHHCCCCCEEEEEEEECC
T ss_conf 863597999997-47---78851121888986568806887668898205647744105778865088976778875177
Q ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 2164322358669999758672778998876341035785799995199-889873356689898644577740588438
Q gi|254780363|r 106 TLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQ-VVELQYGIDVMHEISQDEILKDLIGQKLKF 184 (264)
Q Consensus 106 ~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~-~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~ 184 (264)
.|.+++. +.++||||+.|||||||+|++++....+-.++-|||||+.+ ..|++|..|+.+++......+ +
T Consensus 473 nFRLP~d-~dtPiIMIGpGTGvAPFRaF~QeR~~~~A~GknWLFFGnpHF~~DFLYQ~EWQ~ylK~G~LT~--------~ 543 (628)
T TIGR01931 473 NFRLPED-PDTPIIMIGPGTGVAPFRAFMQERAEDGAKGKNWLFFGNPHFTTDFLYQVEWQKYLKKGVLTR--------M 543 (628)
T ss_pred CCCCCCC-CCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEE--------E
T ss_conf 8888888-897878736877800002357887634899862532178871321357899999983565310--------0
Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECC-HHHHHHHHHHHHHCCCCC
Q ss_conf 982045444446567754311047885289988731378999689-899999999999869853
Q gi|254780363|r 185 YRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGS-PTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 185 ~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGp-p~Mi~~v~~~L~~~G~~~ 247 (264)
=.+-||++.. +=||++.|.. .-.+ +-.+-.+.++|||||. .-|-+||.+.|++.=-+.
T Consensus 544 DlAfSRDq~e-KiYVQhrirE-~g~E---Lw~Wlq~GA~iYVCGDA~~MAKDVh~aLL~vi~~~ 602 (628)
T TIGR01931 544 DLAFSRDQAE-KIYVQHRIRE-QGAE---LWQWLQEGAHIYVCGDAKKMAKDVHQALLDVIAKE 602 (628)
T ss_pred CCCCCCCCCC-CCHHHHHHHH-HHHH---HHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 2300326565-3115567787-4899---99998589748982682010347999999999961
No 70
>KOG0039 consensus
Probab=99.83 E-value=2e-18 Score=142.95 Aligned_cols=232 Identities=18% Similarity=0.288 Sum_probs=146.9
Q ss_pred CEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCC-CC
Q ss_conf 06898888479986999980778998399717999984398588766542285768860589999438885661001-23
Q gi|254780363|r 14 CESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQN-IQ 92 (264)
Q Consensus 14 ~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~-l~ 92 (264)
..+++++.=...++..+++.+|..|+|+||||+.|.+|.-....++||||+|+|+|+++.++|+.. |..|..|.+ +.
T Consensus 356 ~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p~ls~~qwHPFTItSsp~dd~lsvhIk~~--g~wT~~L~~~~~ 433 (646)
T KOG0039 356 NVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCPSLSKLEWHPFTITSAPEDDFLSVHIKAL--GDWTEKLRNAFS 433 (646)
T ss_pred CCEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCEEEEEEEEC--CCHHHHHHHHHH
T ss_conf 834668998079837999736988877888889997760345245785743589899799999944--856699999863
Q ss_pred C------------CCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC----------------CCC
Q ss_conf 8------------851002578873216432235866999975867277899887634103----------------578
Q gi|254780363|r 93 P------------GDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYE----------------KFD 144 (264)
Q Consensus 93 ~------------Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~----------------~~~ 144 (264)
. .-++.+.| |+|.-..| .....+++||+||+|+||+.|+++++.... ..+
T Consensus 434 ~~~~~~~~~~~~~~~~i~IdG-PYG~~s~d-~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~ 511 (646)
T KOG0039 434 EVSQPPESDKSYPFPKILIDG-PYGAPSQD-VFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLK 511 (646)
T ss_pred CCCCCCCCCCCCCCCEEEEEC-CCCCCCCC-HHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 413565545444686599878-99997404-3224638998378775864777899984156677767644666431114
Q ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCC---------------------------
Q ss_conf 57999951998898733566898986445777405884389820--4544444---------------------------
Q gi|254780363|r 145 EVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTV--TQEDYLY--------------------------- 195 (264)
Q Consensus 145 ~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~--s~e~~~~--------------------------- 195 (264)
++.++|-+|...++....++........... . ...+-+.+- ...+..+
T Consensus 512 ~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~--~-~e~~~~~t~~~~~~d~~~~~~~~~~~~~~~~~~~di~~g~~~~~~ 588 (646)
T KOG0039 512 KVYFYWVTREQRSFEWFKGLLTEVEEYDSSG--V-IELHNYVTSSYEEGDARSALIQMVQKLLHAKNGVDIVTGLKVETH 588 (646)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
T ss_conf 5159997042002799998989978775148--7-211100001055543255688998754034578751144367882
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 65677543110478852899887313789996898999999999998698531567995099998
Q gi|254780363|r 196 KGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGTFVVER 260 (264)
Q Consensus 196 ~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~~~~E~ 260 (264)
.||- .. ..+.+......-.. ..-|+.||||.|.+.+++...+...+ .++--+++-|.
T Consensus 589 ~gRP--n~--~~~~~~~~~~~~~~-~vgVf~CGp~~l~~~~~~~~~~~~~~---~~~~~~f~~E~ 645 (646)
T KOG0039 589 FGRP--NW--KEVFKEIAKSHPNV-RVGVFSCGPPGLVKELRKLCNDFSSS---TATRFEFHKEN 645 (646)
T ss_pred CCCC--CH--HHHHHHHHHHCCCC-EEEEEEECCHHHHHHHHHHHHHCCCC---CCCEEEEEEEC
T ss_conf 7899--77--99999998608884-59999959778999999999853545---67526886305
No 71
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.83 E-value=3.2e-18 Score=141.70 Aligned_cols=207 Identities=18% Similarity=0.285 Sum_probs=146.6
Q ss_pred EEEECCCCCC---CCCCCEEEEEEECCCEEEEEEEEECCCCCCC-CEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 9980778998---3997179999843985887665422857688-60589999438885661001238851002578873
Q gi|254780363|r 30 FCITRPKSFR---FRSGEFVMLGLMVNGRRISRAYSMASPCWDD-KLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTG 105 (264)
Q Consensus 30 ~~l~~~~~~~---f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~-~le~~i~~v~~G~~S~~L~~l~~Gd~i~i~~~p~G 105 (264)
+++..|-.++ ...|||+-|+-+-+|....--||+-.-|+|. -+-++.+. ..|.+-.|+..|+|||.+.+.. .+|
T Consensus 935 l~f~~p~~~q~~g~~~~~~~~~r~~~~g~~~~~~~~p~~~p~~~g~~~~~~~~-~~~~~~~w~~~~~pg~~ve~k~-~~g 1012 (1167)
T PTZ00306 935 LRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARG-DKGTLKEWISALRPGDSVEMKA-CGG 1012 (1167)
T ss_pred EEEECCCHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEC-CCCCHHHHHHHCCCCCEEEEEC-CCC
T ss_conf 99746625643564422069995022575024555563367767447899634-7776898998359998067631-574
Q ss_pred CCCCCCC----------CCCCEEEEEECCCCHHHHHHHHHHHHHH---CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2164322----------3586699997586727789988763410---35785799995199889873356689898644
Q gi|254780363|r 106 TLVLDAL----------IPGNRLYLFSTGTGIAPFVSVIRDPGTY---EKFDEVIVTQTCRQVVELQYGIDVMHEISQDE 172 (264)
Q Consensus 106 ~f~~d~~----------~~~~~lilIAgGtGItP~~sii~~~~~~---~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~ 172 (264)
+.++.- ..-+.+.+||||||+|||+.|||..... +....|.|+|.+....++.|++-+...
T Consensus 1013 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~apm~q~~~aa~~~~~~~~~~~~~~~y~a~~~~~~~~r~~l~~~----- 1086 (1167)
T PTZ00306 1013 -LRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESY----- 1086 (1167)
T ss_pred -EEEECCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHCHHHHHHHHH-----
T ss_conf -68843635533221354100157882587632699999998528654650016778661301012099999998-----
Q ss_pred HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHC-CEEEEECCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5777405884389820454444465677543110478852899887313-789996898999999999998698531567
Q gi|254780363|r 173 ILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDT-DRIMICGSPTMIVDMKDLLIAKKFREGSNS 251 (264)
Q Consensus 173 ~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~-~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~ 251 (264)
.+...++|++..++.+|+..|.+-+ +.+....+...+ + .|.+ -.+.|||||.|-.+++..|+++|+.....+
T Consensus 1087 --~~~~~~~f~~~f~~~~p~~~w~~~v-~~~~~~~~~~~~--~--~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 1159 (1167)
T PTZ00306 1087 --RKENPGKFKCHFVLNNPPEGWTDGV-GFVDRALLQSAL--Q--PPSKDLLVAICGPPVMQRAVKADLLALGYNMELVR 1159 (1167)
T ss_pred --HHHCCCCEEEEEEECCCCCCCCCCC-CCHHHHHHHHCC--C--CCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHEE
T ss_conf --8758876478998069985543654-400068786246--9--98867179983878988999999997177787855
No 72
>pfam00970 FAD_binding_6 Oxidoreductase FAD-binding domain.
Probab=99.81 E-value=3.3e-19 Score=148.21 Aligned_cols=94 Identities=23% Similarity=0.386 Sum_probs=84.8
Q ss_pred CEEEEEEEECCCCEEEEEEECC---CCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-CCEEEEEEEECCCCCCCCCC
Q ss_conf 0689888847998699998077---8998399717999984398588766542285768-86058999943888566100
Q gi|254780363|r 14 CESVISIKHYTDRLFRFCITRP---KSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-DKLEFFSIKVEQGPLTTHLQ 89 (264)
Q Consensus 14 ~~~V~~v~~~t~~~~~~~l~~~---~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-~~le~~i~~v~~G~~S~~L~ 89 (264)
+++|++++++|+++++|+|..+ ..+.|.||||+.|.++.+|..++|+|||+|.|.+ +.+||+++++++|.+|+||+
T Consensus 1 p~kv~~~~~lt~dv~~~~f~~~~~~~~~~f~pGQ~v~l~~~~~g~~~~R~YS~~s~p~~~~~~e~~Vk~~~~G~~S~~l~ 80 (99)
T pfam00970 1 PAKLVEKESLSHDTRRFRFALPSPDQVLGLPPGQHIFLRLPIDGKLVVRAYSPASSPDDVGELELLVKVYPGGKMSQYLD 80 (99)
T ss_pred CCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCCCCCCCCEEEEEEEEECCCCHHHHHH
T ss_conf 94999999858995999999799864348899609999976599899877221566578985999999970796677875
Q ss_pred CCCCCCEEECCCCCCCCCC
Q ss_conf 1238851002578873216
Q gi|254780363|r 90 NIQPGDTILLHKKSTGTLV 108 (264)
Q Consensus 90 ~l~~Gd~i~i~~~p~G~f~ 108 (264)
++++||+|.+++ |.|.|.
T Consensus 81 ~l~~Gd~v~i~g-P~G~F~ 98 (99)
T pfam00970 81 SLKVGDTVEVKG-PLGHFE 98 (99)
T ss_pred CCCCCCEEEEEC-CCEEEE
T ss_conf 289999999984-358667
No 73
>pfam00175 NAD_binding_1 Oxidoreductase NAD-binding domain. Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity.
Probab=99.80 E-value=1.3e-19 Score=151.04 Aligned_cols=103 Identities=21% Similarity=0.306 Sum_probs=76.3
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---
Q ss_conf 99758672778998876341035785799995199889873356689898644577740588438982045444446---
Q gi|254780363|r 120 LFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYK--- 196 (264)
Q Consensus 120 lIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~--- 196 (264)
|||||||||||+||++++...+...+++|+||+|+.+|++|.+++..+....+ ++.++++.+ ++..|.
T Consensus 1 lIAgG~GitP~~sml~~~~~~~~~~~v~l~~g~r~~~d~~~~~~l~~~~~~~~--------~~~~~~~~~-~~~~~~~~~ 71 (106)
T pfam00175 1 MIAGGTGIAPLYSVLKALLEDEDGTEVYLVYGNRTEDDLLLREELEELAKKYP--------NLKVVAVSR-TDDGWYGRK 71 (106)
T ss_pred CEEEEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC--------CEEEEEEEC-CCCCCCCCC
T ss_conf 90889659999999999997189986899995499899981899999999889--------909999971-478888877
Q ss_pred CCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHH
Q ss_conf 567754311047885289988731378999689899999999
Q gi|254780363|r 197 GRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKD 238 (264)
Q Consensus 197 grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~ 238 (264)
|||++.+ +.+. ...+++++.+|+||||+||+++++
T Consensus 72 G~v~~~~----~~~~---~~~~~~~~~~y~CGP~~M~~av~~ 106 (106)
T pfam00175 72 GYVTDAL----LEEH---LSEDLGDTDVYVCGPPPMMKAVRK 106 (106)
T ss_pred CCCCHHH----HHHH---CCCCCCCCEEEEECCHHHHHHHCC
T ss_conf 5589999----9863---578889938999099999997259
No 74
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.78 E-value=5.7e-18 Score=139.97 Aligned_cols=221 Identities=15% Similarity=0.206 Sum_probs=151.4
Q ss_pred CCEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEEEEECCCEEEEEEEEECCC-CCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 1068988884799869999807789-98399717999984398588766542285-768860589999438885661001
Q gi|254780363|r 13 YCESVISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRRISRAYSMASP-CWDDKLEFFSIKVEQGPLTTHLQN 90 (264)
Q Consensus 13 ~~~~V~~v~~~t~~~~~~~l~~~~~-~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~-p~~~~le~~i~~v~~G~~S~~L~~ 90 (264)
.++|+++.+++++.++.|++..|.- -.-+|||||.|++...|+.+ |.|||.. +..+.+.+....| |+-|..|..
T Consensus 649 ~~~kIl~k~~La~~i~ef~V~AP~VAkkakPGQFVIvr~dEkGERI--PLTIaD~D~EkGtItiV~Q~v--GkST~~L~~ 724 (944)
T PRK12779 649 IPQTIVGKVPLAGGIVEFTVRAPMVARSAQAGQFVRVLPWEKGELI--PLTLADWDAEKGTIDLVVQGM--GTSSLEINR 724 (944)
T ss_pred CHHHHHHHHHCCCCEEEEEEECHHHHHHCCCCCEEEEEECCCCCCC--CCCCCCCCCCCCEEEEEEEEC--CHHHHHHHC
T ss_conf 6487875551457459999978577602699987999858998736--864134556789799999963--876999863
Q ss_pred CCCCCEEE-CCCCCCCCC-CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 23885100-257887321-6432235866999975867277899887634103578579999519988987335668989
Q gi|254780363|r 91 IQPGDTIL-LHKKSTGTL-VLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEI 168 (264)
Q Consensus 91 l~~Gd~i~-i~~~p~G~f-~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~ 168 (264)
+++||.+. +.| |.|.- .++.+...++++++|||+||||++.+++.++..+ .+++.+.|+|+.+-+++.++.....
T Consensus 725 l~~GD~i~D~vG-PLG~Psei~~~~~~~~Vv~vgGGvGiA~vyPiaKalke~G--N~V~~IiGaR~kdllilede~~~vs 801 (944)
T PRK12779 725 MAIGDAFSGIAG-PLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG--NHVTLISGFRAKEFLFWTGDDERVG 801 (944)
T ss_pred CCCCCEEEECCC-CCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEEHHHHHHH
T ss_conf 689987632257-8999722235067874999915112414469999999859--9369997235611277500456666
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 8644577740588438982045444446567754311047885289988731378999689899999999999869853
Q gi|254780363|r 169 SQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264)
.. ...+.+.+..+.+..+.+...+|.+|+.+.. .+++.. ......-++|+.-||+.||+++.++-++.|++-
T Consensus 802 ~l----~~e~~d~l~viitTDDGS~G~KG~VTd~Lk~-lle~~~--~~~G~~~d~V~aIGP~iMMK~vs~~Tk~ygI~T 873 (944)
T PRK12779 802 KL----KAEFGDQLSVIYTTNDGSFGVKGFVTGPLEE-MLKANQ--QGKGRTIAEVIAIGPPLMMRAVSDLTKPYGVKT 873 (944)
T ss_pred HH----HHHHCCCCCEEEECCCCCCCCCCCHHHHHHH-HHHHCC--CCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCE
T ss_conf 66----6652353427997689998745613089999-997332--124776338999898899999998605469973
No 75
>KOG1159 consensus
Probab=99.78 E-value=2.7e-19 Score=148.83 Aligned_cols=166 Identities=25% Similarity=0.348 Sum_probs=115.2
Q ss_pred EEEEEECCCCCCCCEEEEEEEEC---------CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHH
Q ss_conf 76654228576886058999943---------888566100123885100257887321643223586699997586727
Q gi|254780363|r 58 SRAYSMASPCWDDKLEFFSIKVE---------QGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIA 128 (264)
Q Consensus 58 ~R~YSiaS~p~~~~le~~i~~v~---------~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGIt 128 (264)
.|+|||||.|..-.||+++-.|+ .|.||+||..|++||+|.+.-.| |++..+.. ..+++|||+-|||+|
T Consensus 368 PR~fSIas~~~~~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~-g~l~~p~~-~~~PlImVGPGTGvA 445 (574)
T KOG1159 368 PRAFSIASSPGAHHLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRP-GTLYFPSD-LNKPLIMVGPGTGVA 445 (574)
T ss_pred CCEEEECCCCCCCCEEEEEEEEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEEEC-CCCCCCCC-CCCCEEEECCCCCCC
T ss_conf 5224621688887606899999986400465310658998636898857888855-83426877-788769975898753
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCC-
Q ss_conf 7899887634103578579999519988-98733566898986445777405884389820454444465677543110-
Q gi|254780363|r 129 PFVSVIRDPGTYEKFDEVIVTQTCRQVV-ELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSG- 206 (264)
Q Consensus 129 P~~sii~~~~~~~~~~~i~L~~g~R~~~-dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g- 206 (264)
|++|++++... +...+..|++|||+.+ |++|.+++...... -...+.||++. .+-+|++.+...
T Consensus 446 PfRa~i~er~~-q~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~------------~~~~AFSRDqe-~kvYVQh~i~e~g 511 (574)
T KOG1159 446 PFRALIQERIY-QGDKENVLFFGCRNKDKDFLYEDEWTELNKR------------AFHTAFSRDQE-QKVYVQHKIRENG 511 (574)
T ss_pred CHHHHHHHHHH-HCCCCCEEEEECCCCCCCCCCCCHHHHHHCC------------HHHHHCCCCCC-CCEEHHHHHHHHH
T ss_conf 17999999886-2457846998424677662251113432100------------22200064566-6253899998745
Q ss_pred HHHHHCCCCCCCHHCCEEEEECCH-HHHHHHHHHHHHC
Q ss_conf 478852899887313789996898-9999999999986
Q gi|254780363|r 207 EFYRNMDLSPLNPDTDRIMICGSP-TMIVDMKDLLIAK 243 (264)
Q Consensus 207 ~l~~~~~~~~~~~~~~~vyiCGpp-~Mi~~v~~~L~~~ 243 (264)
.... .-++..++.+|+||+- .|-.+|+++|.+.
T Consensus 512 ~~v~----~ll~~~~a~~fvaGsS~kMP~~Vk~a~~~I 545 (574)
T KOG1159 512 EEVW----DLLDNLGAYFFVAGSSGKMPKDVKEALIEI 545 (574)
T ss_pred HHHH----HHHHCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 9999----998525978999358887768999999999
No 76
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.73 E-value=1.1e-16 Score=131.49 Aligned_cols=200 Identities=16% Similarity=0.216 Sum_probs=141.7
Q ss_pred EEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEEEEECCCEEEEEEEEECCC-CCCCCEEEEEEEECCCCCCCCC-CCCC
Q ss_conf 8988884799869999807789-98399717999984398588766542285-7688605899994388856610-0123
Q gi|254780363|r 16 SVISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRRISRAYSMASP-CWDDKLEFFSIKVEQGPLTTHL-QNIQ 92 (264)
Q Consensus 16 ~V~~v~~~t~~~~~~~l~~~~~-~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~-p~~~~le~~i~~v~~G~~S~~L-~~l~ 92 (264)
|+++.+++++.+|.|.++.|.- -.-+|||||.|++..+|+.+ |.|||.. +..+.+.+.+..| |+-|..| .+++
T Consensus 3 KIl~K~~Ls~~v~l~eVeAP~IAk~akpGQFVIvr~~E~GERI--PLTIad~D~ekGtItiV~q~v--GksT~~L~~~l~ 78 (993)
T PRK12775 3 SIVRREQFSDTTFLWDVEAPDIAASAEPGHFVMLRLYDGAERI--PLTVADFDRKKGLVTMVVQAL--GKTTREMRDKFK 78 (993)
T ss_pred CHHHHHHCCCCEEEEEEECHHHHHHCCCCCEEEEEECCCCCCC--CCCHHCCCCCCCEEEEEEEEC--CHHHHHHHHHCC
T ss_conf 0232343576338999977687835789987999838998746--765300466788799999964--872999996225
Q ss_pred CCCEE-ECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 88510-02578873216432235866999975867277899887634103578579999519988987335668989864
Q gi|254780363|r 93 PGDTI-LLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQD 171 (264)
Q Consensus 93 ~Gd~i-~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~ 171 (264)
+||.+ .+.| |.|.-+ .....+++++|+||+|+||++-+++.++. .-.+++.+.|+|+.+-+++.+++..
T Consensus 79 ~GD~i~DivG-PLG~Ps--~Ie~~G~Vv~VgGGvGiApv~PiakaLke--~GN~V~~IiGaR~kdlvilede~~~----- 148 (993)
T PRK12775 79 AGDTFEDFVG-PLGLPQ--HIDKAGHVVFVGGGLGVAPIFPQLRAFKE--AGARTTAIMGFRNKDLVFWEDKFRE----- 148 (993)
T ss_pred CCCEEEECCC-CCCCCC--CCCCCCEEEEEECCEEHHHHHHHHHHHHH--CCCEEEEEEECCCCCCEEHHHHHHH-----
T ss_conf 8987733266-799964--10257739999087743023899999998--5990899984266002334999986-----
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 457774058843898204544444656775431104788528998873137899968989999999999986985
Q gi|254780363|r 172 EILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 172 ~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
..+++.+ +..+.+...+|.+|+.+. .+.+. . .-+.++.-||++||+.+.++-+..|+.
T Consensus 149 ------~sdel~i--~TDDGS~G~kG~VTd~L~--elle~---~----k~D~V~aIGP~~MMK~vs~~Tk~ygIp 206 (993)
T PRK12775 149 ------YADDLII--CTDDGSYGEPGFVTAALK--RVCEK---Q----KPDKVVAIGPMPMMHACVETTRPFGVK 206 (993)
T ss_pred ------HCCCEEE--ECCCCCCCCCCEEHHHHH--HHHHC---C----CCCEEEEECCHHHHHHHHHHHCCCCCC
T ss_conf ------4683899--768999875642069999--99866---8----988899989889999999872525997
No 77
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.36 E-value=1.2e-10 Score=91.14 Aligned_cols=201 Identities=13% Similarity=0.174 Sum_probs=137.1
Q ss_pred EEEEEECCCCEEEEEEECCCC--C-CCCCCCEEEEEEECCCE-------------------EEEEEEEECC-CCCCCCEE
Q ss_conf 988884799869999807789--9-83997179999843985-------------------8876654228-57688605
Q gi|254780363|r 17 VISIKHYTDRLFRFCITRPKS--F-RFRSGEFVMLGLMVNGR-------------------RISRAYSMAS-PCWDDKLE 73 (264)
Q Consensus 17 V~~v~~~t~~~~~~~l~~~~~--~-~f~~GQ~v~i~~~~~g~-------------------~~~R~YSiaS-~p~~~~le 73 (264)
|++++++|+...+++|..+.- | ...+|||+.|-++..|. +..|.||+-+ .|..+.|+
T Consensus 1 V~~~~~lsp~~~Ritl~g~~l~~~~~~~~~~~vkl~~p~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~~l~ 80 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELD 80 (235)
T ss_pred CCCEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEE
T ss_conf 90169769996999996686100888999887999847999877778766642357878888787774011778789799
Q ss_pred EEEEEECC-CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 89999438-88566100123885100257887321643223586699997586727789988763410357857999951
Q gi|254780363|r 74 FFSIKVEQ-GPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTC 152 (264)
Q Consensus 74 ~~i~~v~~-G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~ 152 (264)
+-...+.+ |..|.|..++++||+|.+.+ |+|.+.++. ..+.++|+|==|++--+.+||+++- ...+.+.+.-+
T Consensus 81 iDfvlH~~~Gpas~WA~~a~~GD~i~i~g-P~g~~~~~~--~~~~~ll~gDeTAlPAia~iLe~lp---~~~~~~~~iev 154 (235)
T cd06193 81 IDFVLHGDEGPASRWAASAQPGDTLGIAG-PGGSFLPPP--DADWYLLAGDETALPAIAAILEELP---ADARGTALIEV 154 (235)
T ss_pred EEEEECCCCCCHHHHHHHCCCCCEEEEEC-CCCCCCCCC--CCCEEEEEECCCCHHHHHHHHHHCC---CCCEEEEEEEE
T ss_conf 99996799985799998589999778886-898878999--8777999824424899999998688---99849999997
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHH
Q ss_conf 99889873356689898644577740588438982045444446567754311047885289988731378999689899
Q gi|254780363|r 153 RQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTM 232 (264)
Q Consensus 153 R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~M 232 (264)
.+.+|... + .....-+++++. +++..- + ..+...+........+.+++++|-..+
T Consensus 155 ~~~~d~~~---l----------~~~~~~~v~wl~---r~~~~~-~--------~~~~~~~~~~~~~~~~~~~w~AgE~~~ 209 (235)
T cd06193 155 PDAADEQP---L----------PAPAGVEVTWLH---RGGAEA-G--------ELALLAVRALAPPAGDGYVWIAGEAGA 209 (235)
T ss_pred CCHHHCCC---C----------CCCCCCEEEEEE---CCCCCC-C--------HHHHHHHHHCCCCCCCCEEEEECCHHH
T ss_conf 98787256---7----------798996699984---799886-3--------689999974558878828999664589
Q ss_pred HHHHHHHHHHC-CCCCC
Q ss_conf 99999999986-98531
Q gi|254780363|r 233 IVDMKDLLIAK-KFREG 248 (264)
Q Consensus 233 i~~v~~~L~~~-G~~~~ 248 (264)
++++++.|++. |+.+.
T Consensus 210 ~r~lR~~l~~~~g~~r~ 226 (235)
T cd06193 210 VRALRRHLREERGVPRA 226 (235)
T ss_pred HHHHHHHHHHHHCCCHH
T ss_conf 99999999985199879
No 78
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1.1e-08 Score=77.79 Aligned_cols=215 Identities=14% Similarity=0.186 Sum_probs=140.4
Q ss_pred CCCCCCCEEEEEEEECCCCEEEEEEECCCCCCC---CCC-CEEEEEEECCCE--------------------EEEEEEEE
Q ss_conf 366531068988884799869999807789983---997-179999843985--------------------88766542
Q gi|254780363|r 8 LPVNVYCESVISIKHYTDRLFRFCITRPKSFRF---RSG-EFVMLGLMVNGR--------------------RISRAYSM 63 (264)
Q Consensus 8 ~p~~~~~~~V~~v~~~t~~~~~~~l~~~~~~~f---~~G-Q~v~i~~~~~g~--------------------~~~R~YSi 63 (264)
.....+.++|+.++++||...++.|..+....| .+| ||+.|-++..+. ++.|.|||
T Consensus 13 ~~~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTi 92 (265)
T COG2375 13 LGPRLHEATVTRVTQLSPHMVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTI 92 (265)
T ss_pred CCCCCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 56665489999888628973999994555255555567873069982586578777764333223576334777645300
Q ss_pred CCC-CCCCCEEEEEEEE-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf 285-7688605899994-38885661001238851002578873216432235866999975867277899887634103
Q gi|254780363|r 64 ASP-CWDDKLEFFSIKV-EQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYE 141 (264)
Q Consensus 64 aS~-p~~~~le~~i~~v-~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~ 141 (264)
.+. +..+++.+-.+.+ ++|..|.|-.+.++||+|.+.+ |.|.+.++. ....++|++==|++--+.+||+++-.
T Consensus 93 R~~d~~~~e~~vDfVlH~~~gpas~WA~~a~~GD~l~i~G-P~g~~~p~~--~~~~~lLigDetAlPAIa~iLE~lp~-- 167 (265)
T COG2375 93 RAVDAAAGELDVDFVLHGEGGPASRWARTAQPGDTLTIMG-PRGSLVPPE--AADWYLLIGDETALPAIARILETLPA-- 167 (265)
T ss_pred EEECCCCCEEEEEEEECCCCCCCHHHHHHCCCCCEEEEEC-CCCCCCCCC--CCCEEEEECCCCCHHHHHHHHHHCCC--
T ss_conf 4531666679899997179986306686488999899857-888777998--75528996352125899999986888--
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHC
Q ss_conf 57857999951998898733566898986445777405884389820454444465677543110478852899887313
Q gi|254780363|r 142 KFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDT 221 (264)
Q Consensus 142 ~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~ 221 (264)
..+...+-.+...+|. .++. ....-.+++++ +.+.. ....+..+. .....|+.
T Consensus 168 -~~~~~a~lev~d~ad~---~~l~----------~~~~l~~~Wl~---r~~~~---------~~~ll~~a~-~~~~~P~~ 220 (265)
T COG2375 168 -DTPAEAFLEVDDAADR---DELP----------SPDDLELEWLA---RDDAP---------TEQLLAAAL-AQAALPAG 220 (265)
T ss_pred -CCCEEEEEEECCHHHH---HCCC----------CCCCEEEEEEC---CCCCC---------CHHHHHHHH-HCCCCCCC
T ss_conf -8835899993886883---1247----------88760599842---88852---------037999987-31147877
Q ss_pred -CEEEEECCHHHHHHHHHHHHHC-CCCCCCCCCCC
Q ss_conf -7899968989999999999986-98531567995
Q gi|254780363|r 222 -DRIMICGSPTMIVDMKDLLIAK-KFREGSNSRPG 254 (264)
Q Consensus 222 -~~vyiCGpp~Mi~~v~~~L~~~-G~~~~~~~~~g 254 (264)
.+++|.|-..++.++++.|++. ||.+...+.-|
T Consensus 221 ~~~vwiagE~~~v~~~Rk~L~~e~g~dk~~i~a~g 255 (265)
T COG2375 221 DYYVWIAGEASAVKAIRKFLRNERGFDKSRVRAIG 255 (265)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 42899954588999999998642289979812114
No 79
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.13 E-value=1.2e-08 Score=77.71 Aligned_cols=121 Identities=19% Similarity=0.276 Sum_probs=86.5
Q ss_pred CCCEEEEEEEECCCCEEEEEEECCCC-CCCCCCCEEEEEEECCC-EE--EEEEEEECCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf 31068988884799869999807789-98399717999984398-58--8766542285768860589999438885661
Q gi|254780363|r 12 VYCESVISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNG-RR--ISRAYSMASPCWDDKLEFFSIKVEQGPLTTH 87 (264)
Q Consensus 12 ~~~~~V~~v~~~t~~~~~~~l~~~~~-~~f~~GQ~v~i~~~~~g-~~--~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~ 87 (264)
.+.++|++|.+.|+.++.+.+..|-. -.|+||||..+.-..+. .. ..=+-|-++...++.+.-+|+. +-| .|+.
T Consensus 810 ~l~a~V~~V~~lt~~ivElvV~APlAArnF~PGQFyRLQN~~~~~~~lmE~lALTga~vD~e~glis~ivl-e~G-~Ss~ 887 (1048)
T PRK06567 810 LLTSRVNKINILDDKTFELIIHSPLAAKNFKFGQFFRLQNYSEDIAKLIEPVALSPIDIDVEKGLISFIVY-EVG-KSTS 887 (1048)
T ss_pred HHCCEEEEEECCCCCEEEEEEECHHHHHCCCCCCEEEEEECCCCCHHHHCCEEEECCCCCCCCCEEEEEEE-ECC-CCHH
T ss_conf 52128999981699779999967657852899757887402455432301246411322356884899999-418-8556
Q ss_pred CC-CCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 00-123885100257887321643223586699997586727789988763
Q gi|254780363|r 88 LQ-NIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDP 137 (264)
Q Consensus 88 L~-~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~ 137 (264)
|+ .|++|+.|-+.| |.|.- -+++.++++++|+||.|=+-+.|+++..
T Consensus 888 Lc~~L~pgepvvLMG-PTG~P--TeIp~~etV~lvgGg~GnavLf~ilr~~ 935 (1048)
T PRK06567 888 LCKTLSENEKVVLMG-PTGSP--LEIPQNKKIVIVDSEVGNIGLLKVLKEN 935 (1048)
T ss_pred HHHHCCCCCEEEEEC-CCCCC--CCCCCCCEEEEECCCCHHHHHHHHHHHC
T ss_conf 786378998069857-99998--5379997699986873088999999976
No 80
>pfam08030 NAD_binding_6 Ferric reductase NAD binding domain.
Probab=99.10 E-value=1.7e-09 Score=83.41 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=37.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHC---CCCCEEEEEECCCHHHHH-HHHHH
Q ss_conf 66999975867277899887634103---578579999519988987-33566
Q gi|254780363|r 116 NRLYLFSTGTGIAPFVSVIRDPGTYE---KFDEVIVTQTCRQVVELQ-YGIDV 164 (264)
Q Consensus 116 ~~lilIAgGtGItP~~sii~~~~~~~---~~~~i~L~~g~R~~~dl~-y~~~l 164 (264)
++++|||||+||||++++++++.... ..+++.|+|.+|+.+.+- |.+++
T Consensus 2 d~vlliaGG~GIT~~~~~~~~l~~~~~~~~~~~v~~iW~vR~~~~l~wf~~eL 54 (148)
T pfam08030 2 DNLLLVAGGSGITPFISILRDLINKSKKNTLKSIKFYWVVRDLSSLEWFKKEL 54 (148)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHH
T ss_conf 77999814637859999999999841456665489999977855889999999
No 81
>PRK05802 hypothetical protein; Provisional
Probab=99.03 E-value=2e-08 Score=76.23 Aligned_cols=212 Identities=19% Similarity=0.262 Sum_probs=128.9
Q ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEECCCCCC---CCCCCEEEEEEECCCEEEEEEEEECCCCCCCC-EEEEEEEECCC
Q ss_conf 436653106898888479986999980778998---39971799998439858876654228576886-05899994388
Q gi|254780363|r 7 KLPVNVYCESVISIKHYTDRLFRFCITRPKSFR---FRSGEFVMLGLMVNGRRISRAYSMASPCWDDK-LEFFSIKVEQG 82 (264)
Q Consensus 7 ~~p~~~~~~~V~~v~~~t~~~~~~~l~~~~~~~---f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~-le~~i~~v~~G 82 (264)
+.--..+..+|+++...++.+..|++..|..+. .+||-||-|+-+.+....--|-||-.+..++. +.. .+.+ .|
T Consensus 60 k~~R~t~~~~Ii~k~~i~d~l~il~~kvp~kLa~~L~~PGSfVFlR~~~~~~yfd~PISIM~~d~~~~ii~v-aiei-~G 137 (328)
T PRK05802 60 KEGRKTYECKIIKKEEIEDNLIVLTLKVPHKLARDLVYPGSFVFLRNKNSNPFFDVPISIMESDTEENIIKV-AIEV-RG 137 (328)
T ss_pred CCCCCEEEEEEEEEEECCCCEEEEEEECCHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCEEEE-EEEE-EC
T ss_conf 041205899987656427856999971868999970689758998579888752465488761555675999-9997-12
Q ss_pred CCCCCCCCCCCCCEEECCCCCC-CCCCCCCCC--CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
Q ss_conf 8566100123885100257887-321643223--5866999975867277899887634103578579999519988987
Q gi|254780363|r 83 PLTTHLQNIQPGDTILLHKKST-GTLVLDALI--PGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQ 159 (264)
Q Consensus 83 ~~S~~L~~l~~Gd~i~i~~~p~-G~f~~d~~~--~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~ 159 (264)
.=|..|.+++.||.|.++||-. |-|-+.... ..++.+.||.|.|.||+...+|.+...+ .+|.++..-..
T Consensus 138 ~KTk~i~~~~~~~~i~iRGPywNGifGlk~I~~~kn~k~LvIaRGIgqAP~vpVikkL~~n~--NkV~vIid~~~----- 210 (328)
T PRK05802 138 IKTKKILNLNKGEEILIRGPYWNGVFGLKNIKSTKNGKSLVIARGIGQAPAVPVIKKLYSNG--NKVIVILDKGP----- 210 (328)
T ss_pred CCCHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCC--CEEEEEECCCC-----
T ss_conf 34030331246876999677424403705675057973999935623255559999998689--97999985885-----
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHH
Q ss_conf 33566898986445777405884389820454444465677543110478852899887313789996898999999999
Q gi|254780363|r 160 YGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDL 239 (264)
Q Consensus 160 y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~ 239 (264)
|...++.. .++++ +........++ .|..++... ..+.+.+.. .+-..+|+-||--+...+.+.
T Consensus 211 ~~~~fI~e-----yl~~~-~~~~i~~~~l~------~g~lsee~K-~~i~~~ik~----~~~~lI~~~G~D~l~~~ii~~ 273 (328)
T PRK05802 211 FENNFIKE-----YLEEY-NIEVIECNLLD------KGELSEEGK-DILKEIIKK----EDINLIHCGGSDILTYKIIEY 273 (328)
T ss_pred CCCHHHHH-----HHHHC-CCEEEEECCCC------CCCCCHHHH-HHHHHHHHH----CCCCEEEECCHHHHHHHHHHH
T ss_conf 53165999-----99857-83699831422------344578899-999999973----796689966718999999998
Q ss_pred HHHCC
Q ss_conf 99869
Q gi|254780363|r 240 LIAKK 244 (264)
Q Consensus 240 L~~~G 244 (264)
+.+..
T Consensus 274 l~~~~ 278 (328)
T PRK05802 274 LDREN 278 (328)
T ss_pred HCCCC
T ss_conf 45477
No 82
>pfam08022 FAD_binding_8 FAD-binding domain.
Probab=98.81 E-value=2.5e-08 Score=75.59 Aligned_cols=84 Identities=21% Similarity=0.455 Sum_probs=62.9
Q ss_pred EEECCCCEEEEEEECCC-CCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCC--CC--C
Q ss_conf 88479986999980778-9983997179999843985887665422857688605899994388856610012--38--8
Q gi|254780363|r 20 IKHYTDRLFRFCITRPK-SFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQNI--QP--G 94 (264)
Q Consensus 20 v~~~t~~~~~~~l~~~~-~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~l--~~--G 94 (264)
++-..+++.++++.++. .++|+||||+.|.++.-....+++|||+|+|+++.+.|+ +|.. |.+|..|++. +. +
T Consensus 9 v~~lp~~v~~l~i~rp~~~~~~~pGq~vyl~~p~is~~q~HPFTI~s~p~~~~l~~~-ik~~-gg~T~~L~~~~~~~~~~ 86 (103)
T pfam08022 9 VSLLPDNVVELIVSKPKKPFKYKPGQYIFINFPPISFLQSHPFTITSAPEDDKLSVH-IKAK-GGWTKKLAKYLSSSPEN 86 (103)
T ss_pred EEECCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEECCCCCCCEEEEE-EEEC-CCHHHHHHHHHHHCCCC
T ss_conf 999789969999988999788999839999979657653488230346769989999-9969-98779999998745136
Q ss_pred ----CEEECCCCCCCC
Q ss_conf ----510025788732
Q gi|254780363|r 95 ----DTILLHKKSTGT 106 (264)
Q Consensus 95 ----d~i~i~~~p~G~ 106 (264)
-++.|.| |+|.
T Consensus 87 ~~~~~~v~ieG-PYG~ 101 (103)
T pfam08022 87 NKDKPRVLIEG-PYGP 101 (103)
T ss_pred CCCCCEEEEEC-CCCC
T ss_conf 88753899999-8789
No 83
>pfam08021 FAD_binding_9 Siderophore-interacting FAD-binding domain.
Probab=98.45 E-value=8.4e-07 Score=65.33 Aligned_cols=91 Identities=22% Similarity=0.356 Sum_probs=71.1
Q ss_pred EEEEEEECCCCEEEEEEECCCCCCC---CCCCEEEEEEECCCE--------------------EEEEEEEECC-CCCCCC
Q ss_conf 8988884799869999807789983---997179999843985--------------------8876654228-576886
Q gi|254780363|r 16 SVISIKHYTDRLFRFCITRPKSFRF---RSGEFVMLGLMVNGR--------------------RISRAYSMAS-PCWDDK 71 (264)
Q Consensus 16 ~V~~v~~~t~~~~~~~l~~~~~~~f---~~GQ~v~i~~~~~g~--------------------~~~R~YSiaS-~p~~~~ 71 (264)
||++++++|+...+++|..+.--.| .+|||+.|-++..|. +..|.||+-+ .+..+.
T Consensus 1 TV~~~~~lsP~m~Rvtl~g~~l~~f~~~~~d~~vkL~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~~ 80 (116)
T pfam08021 1 TVVRVTRLSPHMRRITFTGPGLAGFPSDGPDDHIKLFFPPPGQTPPVPPTLGEDGIWLPGEQRPIMRTYTVRSFDPAAGE 80 (116)
T ss_pred CCEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCE
T ss_conf 93337977999899999688721087789987799996699987566851364432377777886867525538687997
Q ss_pred EEEEEEEE-CCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 05899994-3888566100123885100257887321
Q gi|254780363|r 72 LEFFSIKV-EQGPLTTHLQNIQPGDTILLHKKSTGTL 107 (264)
Q Consensus 72 le~~i~~v-~~G~~S~~L~~l~~Gd~i~i~~~p~G~f 107 (264)
|.+-...+ .+|..|.|..+.++||+|.+.+ |+|.|
T Consensus 81 idiDfvlHg~~Gpas~WA~~A~pGD~i~i~G-P~g~~ 116 (116)
T pfam08021 81 LDIDFVLHGDEGPASRWAARAQPGDTLGIGG-PGGSF 116 (116)
T ss_pred EEEEEEEECCCCCHHHHHHHCCCCCEEEEEC-CCCCC
T ss_conf 9999998089981688997589999999978-88889
No 84
>pfam00667 FAD_binding_1 FAD binding domain. This domain is found in sulfite reductase, NADPH cytochrome P450 reductase, Nitric oxide synthase and methionine synthase reductase.
Probab=90.27 E-value=1.1 Score=24.40 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=36.0
Q ss_pred CCCCCCCCCEEEEEEEECCC-----CEEEEEEECC-CCCCCCCCCEEEEEEECCC
Q ss_conf 44366531068988884799-----8699998077-8998399717999984398
Q gi|254780363|r 6 PKLPVNVYCESVISIKHYTD-----RLFRFCITRP-KSFRFRSGEFVMLGLMVNG 54 (264)
Q Consensus 6 ~~~p~~~~~~~V~~v~~~t~-----~~~~~~l~~~-~~~~f~~GQ~v~i~~~~~g 54 (264)
|.-..++|.++|++.+.+|. +++.+.+..+ .++.|+||.++.|- +.|.
T Consensus 1 ~y~~~nP~~a~v~~n~~Lt~~~s~k~~~Hie~dl~~s~l~Y~pGD~l~V~-P~N~ 54 (217)
T pfam00667 1 PFDAKNPFLASVVVNRELTKPGSDRSCIHLELDISGSGLRYQTGDHLGVY-PPNN 54 (217)
T ss_pred CCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEE-CCCC
T ss_conf 98889971718877887279998836999999748999714358989997-4799
No 85
>TIGR01408 Ube1 ubiquitin-activating enzyme E1; InterPro: IPR000011 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation , , . Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade . The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction.; GO: 0008641 small protein activating enzyme activity, 0006464 protein modification process, 0006512 ubiquitin cycle.
Probab=83.45 E-value=3.6 Score=21.03 Aligned_cols=89 Identities=20% Similarity=0.366 Sum_probs=52.6
Q ss_pred CCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEEC-------CCE----EEEEEEEECCCCCCC
Q ss_conf 777744366531068988884799869999807789983997179999843-------985----887665422857688
Q gi|254780363|r 2 CDVSPKLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMV-------NGR----RISRAYSMASPCWDD 70 (264)
Q Consensus 2 ~~~~~~~p~~~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~-------~g~----~~~R~YSiaS~p~~~ 70 (264)
.|+..+.|..-+. .+|++.|+.+.+. ..++.+.++-||||... ++ +|+ .+.||||.+=....+
T Consensus 169 lDtdGeEP~~g~I---asIt~~N~g~vtc--le~~rh~lE~Gdfv~F~-Ev~GMtgLNdG~prki~v~~PysFsig~~~~ 242 (1033)
T TIGR01408 169 LDTDGEEPKTGII---ASITDENQGVVTC--LEDERHELEDGDFVKFS-EVEGMTGLNDGKPRKIKVKSPYSFSIGDVTE 242 (1033)
T ss_pred EECCCCCCCCEEE---EEECCCCCEEEEE--EECCCCCCCCCCEEEEE-EECCCCCCCCCCEEEEEEECCEEEECCCCCC
T ss_conf 7267998762024---2012578827987--50776656577667898-6156677888833588982665563377510
Q ss_pred CEEEEEEEECCCCCCC----------CCC-CC-CCCCEEEC
Q ss_conf 6058999943888566----------100-12-38851002
Q gi|254780363|r 71 KLEFFSIKVEQGPLTT----------HLQ-NI-QPGDTILL 99 (264)
Q Consensus 71 ~le~~i~~v~~G~~S~----------~L~-~l-~~Gd~i~i 99 (264)
+++-+ +.+|.+|. -|. .| .||+-|..
T Consensus 243 nlg~y---~~gGi~tQVK~Pk~~~FksLre~LKdPG~~l~~ 280 (1033)
T TIGR01408 243 NLGSY---VKGGIVTQVKVPKKVSFKSLREALKDPGEYLYS 280 (1033)
T ss_pred CCCHH---HCCCEEEEECCCCEECCHHHHHHCCCCCCEEEC
T ss_conf 11211---118768984267511021178624699857832
No 86
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=82.95 E-value=3.2 Score=21.35 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=30.0
Q ss_pred HHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 4788528998873137899968989999999999986985315679950
Q gi|254780363|r 207 EFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGT 255 (264)
Q Consensus 207 ~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~ 255 (264)
.+.+......+++++..++.|+...=-..+...|.++||+. ...-.|.
T Consensus 53 ~~~~~~~~~~~~~~~~iv~yC~~G~rS~~a~~~l~~~Gy~~-v~~~~GG 100 (106)
T cd01519 53 EFEKKYGFPKPSKDKELIFYCKAGVRSKAAAELARSLGYEN-VGNYPGS 100 (106)
T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC-EEECCCC
T ss_conf 99999702158889968998399973999999999869988-5886698
No 87
>PRK12446 N-acetylglucosaminyl transferase; Reviewed
Probab=82.60 E-value=2.4 Score=22.24 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=11.8
Q ss_pred CCEEEEEECCCCHHHHHH
Q ss_conf 866999975867277899
Q gi|254780363|r 115 GNRLYLFSTGTGIAPFVS 132 (264)
Q Consensus 115 ~~~lilIAgGtGItP~~s 132 (264)
.+.++||=|||-=|-.+.
T Consensus 184 ~~~~iLV~GGSqGA~~iN 201 (352)
T PRK12446 184 KKPVITIMGGSLGAKKIN 201 (352)
T ss_pred CCCEEEEECCCHHHHHHH
T ss_conf 785799973751179999
No 88
>PRK00726 murG N-acetylglucosaminyl transferase; Provisional
Probab=79.95 E-value=3.4 Score=21.13 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=18.5
Q ss_pred CEEEEEECCC-CHHHHHHHHHH-HHHHCCCCCEEEEEECCCH
Q ss_conf 6699997586-72778998876-3410357857999951998
Q gi|254780363|r 116 NRLYLFSTGT-GIAPFVSVIRD-PGTYEKFDEVIVTQTCRQV 155 (264)
Q Consensus 116 ~~lilIAgGt-GItP~~sii~~-~~~~~~~~~i~L~~g~R~~ 155 (264)
+..+||-||| |=..+--++.+ +.......++.++|-+...
T Consensus 182 ~~~iLV~GGSqGa~~~N~~v~~~l~~l~~~~~~~i~~~~G~~ 223 (359)
T PRK00726 182 PPTLLVVGGSQGARVLNEAVPEALALLPEELRIQVIHQTGKK 223 (359)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 857999768520478999999999987652590899982840
No 89
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; InterPro: IPR006009 The murG gene of Escherichia coli encodes the N-acetylglucosaminyltransferase, UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase, responsible for the final step in the formation of the lipid-linked disaccharide-pentapeptide subunit of peptidoglycan. The enzyme is peripherally associated with the inner face of the cytoplasmic membrane. Therefore, the peptidoglycan subunit is completely assembled before it traverses the cytoplasmic membrane .; GO: 0050511 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity, 0019277 UDP-N-acetylgalactosamine biosynthetic process, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=77.82 E-value=3.4 Score=21.21 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=13.1
Q ss_pred CEEEEEECCCC-HHHHHHHHHHHHH
Q ss_conf 66999975867-2778998876341
Q gi|254780363|r 116 NRLYLFSTGTG-IAPFVSVIRDPGT 139 (264)
Q Consensus 116 ~~lilIAgGtG-ItP~~sii~~~~~ 139 (264)
+.+++.||||| |-|-+++++++..
T Consensus 6 ~~~~~~gGGTGG~fPAlA~a~~l~~ 30 (368)
T TIGR01133 6 KKVALAGGGTGGIFPALAVAEELIK 30 (368)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 2899972783026899999999997
No 90
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=71.76 E-value=7.7 Score=18.79 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=33.5
Q ss_pred CCCCCCC-CCCCCCCCC--CCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 4544444-656775431--1047885289988731378999689899999999999869853
Q gi|254780363|r 189 TQEDYLY-KGRITNHIL--SGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 189 s~e~~~~-~grit~~i~--~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264)
-|+..+| .|+|++.+. .+.+...+.....+++...|..|....--.-+.+.|+++||+-
T Consensus 32 VRe~~E~~~~hIPGA~~iP~~~l~~r~~~l~pd~~~~ivv~C~~G~RS~~aa~~L~~~G~~n 93 (109)
T cd01533 32 GRRFDEYRKMTIPGSVSCPGAELVLRVGELAPDPRTPIVVNCAGRTRSIIGAQSLINAGLPN 93 (109)
T ss_pred CCCHHHHHHCCCCCCEECCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 98988886075899888772378776987388999859998899849999999999869988
No 91
>pfam08877 MepB MepB protein. MepB is a functionally uncharacterized protein in the mepRAB gene cluster of Staphylococcus aureus.
Probab=71.69 E-value=7.7 Score=18.78 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=32.0
Q ss_pred CCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECC
Q ss_conf 106898888479986999980778998399717999984398588766542285768860589999438
Q gi|254780363|r 13 YCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQ 81 (264)
Q Consensus 13 ~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~ 81 (264)
|.+-...+ +...+++|+. +.-+=++||||.+--...+. ..+||+... ..++++|.|.+
T Consensus 7 Y~a~~f~l---~~~~i~~R~A--K~TP~K~G~FVt~Wkr~~~g-~~~Pf~~~d-----~~d~lvI~v~d 64 (123)
T pfam08877 7 YEAGLFQL---NGHTIRFRLA--KKTPTKPGYFVAFWEKDENG-QNQPFDYDD-----APDLLIIVVID 64 (123)
T ss_pred CCEEEEEE---CCEEEEEEEC--CCCCCCCEEEEEEEEECCCC-CCCCCCCCC-----CCCEEEEEEEC
T ss_conf 32499999---9979999842--46899850699999878999-847874334-----78979999972
No 92
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=71.25 E-value=6.4 Score=19.34 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=18.7
Q ss_pred CCCEEEEEECCC-CHHHHHHHHHH-HHHHCCCCCEEEEEECCC
Q ss_conf 586699997586-72778998876-341035785799995199
Q gi|254780363|r 114 PGNRLYLFSTGT-GIAPFVSVIRD-PGTYEKFDEVIVTQTCRQ 154 (264)
Q Consensus 114 ~~~~lilIAgGt-GItP~~sii~~-~~~~~~~~~i~L~~g~R~ 154 (264)
+++..+||-||| |=..+--.+.+ +.... ..++.++|-+..
T Consensus 179 ~~~~~iLv~GGSqGa~~ln~~v~~~~~~l~-~~~~~ii~~~G~ 220 (350)
T cd03785 179 PGKPTLLVFGGSQGARAINEAVPEALAELL-RKRLQVIHQTGK 220 (350)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHH-HCCCEEEEECCC
T ss_conf 897399998487204789999999999876-449689998384
No 93
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=70.69 E-value=8.1 Score=18.64 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=60.8
Q ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCC--------CCCCEEEEEEE
Q ss_conf 4366531068988884799869999807789983997179999843985887665422857--------68860589999
Q gi|254780363|r 7 KLPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPC--------WDDKLEFFSIK 78 (264)
Q Consensus 7 ~~p~~~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p--------~~~~le~~i~~ 78 (264)
..+..+..++|++|++.-- =-|...|.-=.+++|+-+.++-...+-.+..+=|+.|+. +.+-..-| +.
T Consensus 165 ~~~l~L~~a~Vt~V~~~G~---GdRvCVDt~sll~~gEGmLVGS~s~~~fLVhsEt~~s~yv~~RPFRVNAGavHaY-v~ 240 (347)
T PRK02290 165 RESLELVEAEVTAVEPVGM---GDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHSETEENPYVAPRPFRVNAGAVHAY-VR 240 (347)
T ss_pred CCCCCEEEEEEEEEEECCC---EEEEEEEEHHCCCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCEECCCCHHEE-EE
T ss_conf 7752106999999987574---3079997011278997389610366179997154568988887721327621168-97
Q ss_pred ECCCCCCCCCCCCCCCCEEECCCCCCCCCCC---CC-CCCCCEEEEEEC
Q ss_conf 4388856610012388510025788732164---32-235866999975
Q gi|254780363|r 79 VEQGPLTTHLQNIQPGDTILLHKKSTGTLVL---DA-LIPGNRLYLFST 123 (264)
Q Consensus 79 v~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~---d~-~~~~~~lilIAg 123 (264)
.++| -|.||..|+.||++.+-. ..|.-.. -. ....+++++|-+
T Consensus 241 ~p~g-~T~YLSEL~sG~~Vl~v~-~~G~tR~~~VGRvKIE~RPl~li~a 287 (347)
T PRK02290 241 VPGG-KTRYLSELKAGDEVLIVD-ADGRTREAVVGRVKIEKRPLLLIEA 287 (347)
T ss_pred CCCC-CEEEHHHCCCCCEEEEEE-CCCCEEEEEEEEEEEECCCEEEEEE
T ss_conf 4898-262013404898799997-9998789996088863175699999
No 94
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=70.11 E-value=5.4 Score=19.81 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=33.2
Q ss_pred CCCCCCCCC--CCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 656775431--104788528998873137899968989999999999986985315
Q gi|254780363|r 196 KGRITNHIL--SGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGS 249 (264)
Q Consensus 196 ~grit~~i~--~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~ 249 (264)
.|+|++++. -+.+.+.+.....+++...+..|.+..=-..+.+.|.++||+.=.
T Consensus 34 ~GHI~gAiNIPl~ei~~~~~el~~dK~~~IvvyC~sG~RS~~A~~~L~~~Gy~nV~ 89 (104)
T PRK10287 34 QEHVQGAINIPLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVE 89 (104)
T ss_pred CCCCCCCEECCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 08976578575889999998704477993899869983899999999976997378
No 95
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=69.29 E-value=8.7 Score=18.44 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=43.2
Q ss_pred CCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 31068988884799869999807789983997179999843985887665422857688605899994388856610012
Q gi|254780363|r 12 VYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQNI 91 (264)
Q Consensus 12 ~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~l 91 (264)
+--|+|++-.+...++.+| |--|.+.-..+|+ .+.|+|+.+ .+-.+.-..+.+- -.+...|-.+
T Consensus 39 L~rA~Vvd~~~ip~dvV~~------------gS~V~~~d~~~g~--~~~~~LV~p-~ead~~~gkISv~-SPiG~ALlG~ 102 (135)
T PRK05753 39 LDRAQVVPPAEMPADVVTM------------NSRVRFRDLSSGE--ERVVTLVYP-ADADISNGQVSVL-APVGAALLGL 102 (135)
T ss_pred HCCCEEECHHHCCCCEEEE------------CCEEEEEECCCCC--EEEEEEECH-HHCCCCCCCCCCC-CHHHHHHHCC
T ss_conf 7487895822079998998------------9899999889998--999999490-2649447920101-6999997389
Q ss_pred CCCCEEECCCCCCCC
Q ss_conf 388510025788732
Q gi|254780363|r 92 QPGDTILLHKKSTGT 106 (264)
Q Consensus 92 ~~Gd~i~i~~~p~G~ 106 (264)
++||++.+.. |.|.
T Consensus 103 ~~Gd~i~~~~-P~G~ 116 (135)
T PRK05753 103 SVGQSIDWPL-PGGK 116 (135)
T ss_pred CCCCEEEEEC-CCCC
T ss_conf 9999999988-9997
No 96
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=67.92 E-value=9.3 Score=18.26 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=28.3
Q ss_pred CHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 04788528998873137899968989999999999986985315679950
Q gi|254780363|r 206 GEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGT 255 (264)
Q Consensus 206 g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~ 255 (264)
..+.+.+....+++++..|.-|+...--..+.-+|..+|++ +.+-..|.
T Consensus 64 ~~l~~~~~~~gi~~~~~iV~yC~sG~rA~~~~~~l~~lG~~-nv~~ydGs 112 (118)
T cd01449 64 EELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYK-NVRLYDGS 112 (118)
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCC-CCEEECCC
T ss_conf 99999987608998886777479988999999999980899-84692695
No 97
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=64.90 E-value=11 Score=17.87 Aligned_cols=77 Identities=25% Similarity=0.402 Sum_probs=34.8
Q ss_pred CCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECC--CC------------CCCC---C--CCCCCCC
Q ss_conf 78998399717999984398588766542285768860589999438--88------------5661---0--0123885
Q gi|254780363|r 35 PKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQ--GP------------LTTH---L--QNIQPGD 95 (264)
Q Consensus 35 ~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~--G~------------~S~~---L--~~l~~Gd 95 (264)
...-.|+||.+|.- ..| ||-|++++... .+|+.. .. +|.| | -+.|.|+
T Consensus 86 S~~~~f~~GD~V~~---~~G---Wq~y~i~~~~~-------l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~Ge 152 (340)
T COG2130 86 SNHPGFQPGDIVVG---VSG---WQEYAISDGEG-------LRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGE 152 (340)
T ss_pred CCCCCCCCCCEEEE---CCC---CEEEEEECHHH-------CEECCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 47988888888985---045---26887306644-------256688788832687634783188899998726899998
Q ss_pred EEECCCCC--CCCCCCC-CCCCCCEEEEEECC
Q ss_conf 10025788--7321643-22358669999758
Q gi|254780363|r 96 TILLHKKS--TGTLVLD-ALIPGNRLYLFSTG 124 (264)
Q Consensus 96 ~i~i~~~p--~G~f~~d-~~~~~~~lilIAgG 124 (264)
++.|++.. .|...-. ...++-+++=||||
T Consensus 153 tvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg 184 (340)
T COG2130 153 TVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG 184 (340)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCEEEEECCC
T ss_conf 89997346653068899988607759996588
No 98
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=60.34 E-value=0.65 Score=25.97 Aligned_cols=46 Identities=26% Similarity=0.243 Sum_probs=36.5
Q ss_pred CCHHCCEEEEECCHHHHHHHHHHHHH--CCCCCCCCC-CCCEEEEEEEE
Q ss_conf 87313789996898999999999998--698531567-99509999876
Q gi|254780363|r 217 LNPDTDRIMICGSPTMIVDMKDLLIA--KKFREGSNS-RPGTFVVERAF 262 (264)
Q Consensus 217 ~~~~~~~vyiCGpp~Mi~~v~~~L~~--~G~~~~~~~-~~g~~~~E~~~ 262 (264)
+.++.+++++|+-++|..++...+.. .+.+....+ .||+.+.|.+|
T Consensus 218 ~g~~~~~vh~E~F~~~~~~~~~~~~~~~~~~s~~~~~~~~g~t~lea~~ 266 (266)
T COG1018 218 LGVPDDRVHLEGFGPMLKDTAALLPFTTLARSGKEVRVPPGQTLLEAAE 266 (266)
T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCEECCCCCHHHHHHHC
T ss_conf 5998014888028887753001221012214675431798652886539
No 99
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B; InterPro: IPR013484 MoaB is thought to be involved in molybdopterin biosynthesis, though its exact role is not known. Structural studies of this polypeptide suggest that it may play a role in substrate-shuttling during biosynthesis . MoaB was capable of binding GTP, and it was suggested that the putative active site could also bind precursor Z and/or molybdenum. Potential protein interaction domains were also found, implying that MoaB may play a transport and/or storage role in molybdopterin biosynthesis. .
Probab=59.11 E-value=3.9 Score=20.76 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=11.0
Q ss_pred EEEEEECCCCHHH
Q ss_conf 6999975867277
Q gi|254780363|r 117 RLYLFSTGTGIAP 129 (264)
Q Consensus 117 ~lilIAgGtGItP 129 (264)
+.|++.||||+|+
T Consensus 65 qVil~TGGTGfTg 77 (163)
T TIGR02667 65 QVILITGGTGFTG 77 (163)
T ss_pred CEEEECCCCCCCC
T ss_conf 5688718823467
No 100
>KOG4576 consensus
Probab=58.80 E-value=9.4 Score=18.21 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=30.9
Q ss_pred CCCCCCEEECCCCCCCCCCCC---CCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 123885100257887321643---22358669999758672778998876
Q gi|254780363|r 90 NIQPGDTILLHKKSTGTLVLD---ALIPGNRLYLFSTGTGIAPFVSVIRD 136 (264)
Q Consensus 90 ~l~~Gd~i~i~~~p~G~f~~d---~~~~~~~lilIAgGtGItP~~sii~~ 136 (264)
+-++-+.|+|.- ..|-|-.. +..|+.+-+|+|+|.-|-||+++-.+
T Consensus 90 H~s~e~rIWVTy-g~gVyDVTdFv~~HPGGdKillAAG~a~dPFWalY~q 138 (167)
T KOG4576 90 HTSPETRIWVTY-GSGVYDVTDFVDLHPGGDKILLAAGGALDPFWALYAQ 138 (167)
T ss_pred CCCCCCCEEEEE-CCCCEEHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH
T ss_conf 399764168983-5863247889870899561432068876718999988
No 101
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=54.77 E-value=16 Score=16.73 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=27.9
Q ss_pred CCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 873137899968989999999999986985315679950
Q gi|254780363|r 217 LNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGT 255 (264)
Q Consensus 217 ~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~ 255 (264)
.+++...+.+|....--..+.+.|.++||+.+...-.|.
T Consensus 69 ~~~d~~Ivv~C~~G~rS~~Aa~~L~~~G~~~~V~~l~GG 107 (122)
T cd01526 69 NDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGG 107 (122)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCH
T ss_conf 689987899849996599999999981998647876486
No 102
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=54.23 E-value=16 Score=16.68 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCHHCCEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 8731378999689899999999999869853
Q gi|254780363|r 217 LNPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 217 ~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264)
++++...|..|.....-..+.+.|.++||+.
T Consensus 53 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~ 83 (96)
T cd01444 53 LDRDRPVVVYCYHGNSSAQLAQALREAGFTD 83 (96)
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 5689818998089668999999999828983
No 103
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=53.73 E-value=16 Score=16.62 Aligned_cols=36 Identities=19% Similarity=0.189 Sum_probs=20.2
Q ss_pred CCEE-EEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 8669-999758672778998876341035785799995199889
Q gi|254780363|r 115 GNRL-YLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVE 157 (264)
Q Consensus 115 ~~~l-ilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~d 157 (264)
++++ ++=|||++-|=..++++.. ..+|++ -+|+.+-
T Consensus 126 ~~~vlilGAGGAarAv~~aL~~~g-----~~~i~V--~NRt~~r 162 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALAEAG-----AKRITV--VNRTRER 162 (283)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC-----CCEEEE--EECCHHH
T ss_conf 888999897689999999999869-----987999--9588899
No 104
>pfam04954 SIP Siderophore-interacting protein.
Probab=53.71 E-value=16 Score=16.62 Aligned_cols=105 Identities=9% Similarity=0.141 Sum_probs=61.0
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 66999975867277899887634103578579999519988987335668989864457774058843898204544444
Q gi|254780363|r 116 NRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLY 195 (264)
Q Consensus 116 ~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~ 195 (264)
+..+|+|==|++--+.+||+++ ....+.+.+.-+.+.+|... + .....-+++++. |++..
T Consensus 2 ~~~llvgDeTAlPAi~~iLe~l---p~~~~~~~~iev~~~~d~~~---l----------~~~~~~~v~Wl~---r~~~~- 61 (118)
T pfam04954 2 DWYLLVGDETALPAIARILEEL---PADARGTAVIEVPDAADEQP---L----------AAPAGVEVTWLH---RDGAA- 61 (118)
T ss_pred CEEEEECCCCHHHHHHHHHHHC---CCCCEEEEEEEECCHHHCCC---C----------CCCCCCEEEEEE---CCCCC-
T ss_conf 7799964400099999999868---99984999999898676156---7----------899997899975---79987-
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHH-CCCCCC
Q ss_conf 65677543110478852899887313789996898999999999998-698531
Q gi|254780363|r 196 KGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIA-KKFREG 248 (264)
Q Consensus 196 ~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~-~G~~~~ 248 (264)
.| ..+.+.+........+.+++++|--.+++.+++.|++ .|+.+.
T Consensus 62 ~~--------~~L~~al~~l~~~~~~~~~wvAgE~~~~r~lR~~l~~~~g~~~~ 107 (118)
T pfam04954 62 AG--------ALLLDALRALELPAGDGYVWIAGEAGAVRALRRHLRNERGLPRE 107 (118)
T ss_pred CH--------HHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCHH
T ss_conf 50--------79999998165888976999972578999999999985399979
No 105
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=49.66 E-value=9.3 Score=18.25 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=8.2
Q ss_pred ECCCCHHHHHHHHHH
Q ss_conf 758672778998876
Q gi|254780363|r 122 STGTGIAPFVSVIRD 136 (264)
Q Consensus 122 AgGtGItP~~sii~~ 136 (264)
+||-||||+++||++
T Consensus 209 ~g~gGiaaLltMLqS 223 (254)
T COG1691 209 AGGGGIAALLTMLQS 223 (254)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 687658899999973
No 106
>pfam03033 Glyco_transf_28 Glycosyltransferase family 28 N-terminal domain. The glycosyltransferase family 28 includes monogalactosyldiacylglycerol synthase (EC 2.4.1.46) and UDP-N-acetylglucosamine transferase (EC 2.4.1.-). This N-terminal domain contains the acceptor binding site and likely membrane association site. This family also contains a large number of proteins that probably have quite distinct activities.
Probab=49.63 E-value=13 Score=17.36 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=19.9
Q ss_pred EEEEECCCC--HHHHHHHHHHHHHHCC
Q ss_conf 999975867--2778998876341035
Q gi|254780363|r 118 LYLFSTGTG--IAPFVSVIRDPGTYEK 142 (264)
Q Consensus 118 lilIAgGtG--ItP~~sii~~~~~~~~ 142 (264)
+++.||||| +-|.+++.+++...+.
T Consensus 1 Ilia~GGTGGHv~Palala~~L~~~g~ 27 (136)
T pfam03033 1 VLLAGGGTRGHVFPAVALAWALRRRGH 27 (136)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHCCC
T ss_conf 989944157999999999999998599
No 107
>TIGR01687 moaD_arch MoaD family protein; InterPro: IPR010038 Members of this family appear to be archaeal and bacterial (proteobacteria and Thermus) versions of MoaD, subunit 1 of molybdopterin converting factor..
Probab=49.62 E-value=16 Score=16.72 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=22.6
Q ss_pred EEEEECCCC-CCCC---CC-CCCCCCEEECCCCCCC
Q ss_conf 999943888-5661---00-1238851002578873
Q gi|254780363|r 75 FSIKVEQGP-LTTH---LQ-NIQPGDTILLHKKSTG 105 (264)
Q Consensus 75 ~i~~v~~G~-~S~~---L~-~l~~Gd~i~i~~~p~G 105 (264)
+++.| ||+ =.++ |. .||-||.|-|-+|+.|
T Consensus 58 v~ilv-NGran~~~l~GL~~~LkdGD~vai~PPVsG 92 (93)
T TIGR01687 58 VIILV-NGRANVDWLEGLETELKDGDVVAIFPPVSG 92 (93)
T ss_pred EEEEE-CCCCCCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 78985-164143220365752327875675069989
No 108
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=49.19 E-value=19 Score=16.16 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=24.8
Q ss_pred CCCHHCCEEEEECCHHHHHHHHHHHHHCCCC
Q ss_conf 8873137899968989999999999986985
Q gi|254780363|r 216 PLNPDTDRIMICGSPTMIVDMKDLLIAKKFR 246 (264)
Q Consensus 216 ~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~ 246 (264)
.++++...+..|....--..+...|.++||+
T Consensus 47 ~l~k~~~ivv~C~~G~rS~~aa~~L~~~G~~ 77 (90)
T cd01524 47 ELPKDKEIIVYCAVGLRGYIAARILTQNGFK 77 (90)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 8615870999889980599999999986998
No 109
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=48.42 E-value=7.1 Score=19.03 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=13.8
Q ss_pred CEEEEEECCCCHHHHHHH
Q ss_conf 669999758672778998
Q gi|254780363|r 116 NRLYLFSTGTGIAPFVSV 133 (264)
Q Consensus 116 ~~lilIAgGtGItP~~si 133 (264)
-++++.-||||+||==-.
T Consensus 68 ~DvvlttGGTG~t~RDvT 85 (169)
T COG0521 68 VDVVLTTGGTGITPRDVT 85 (169)
T ss_pred CCEEEECCCCCCCCCCCC
T ss_conf 779997598368988678
No 110
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=48.42 E-value=20 Score=16.08 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=31.2
Q ss_pred EEEECCCCCCCC-CCCCCCCCCC--CHHHHHCCCCCCCHHCCEEEEECCHHH--HHHHHHHHHHCCCC
Q ss_conf 898204544444-6567754311--047885289988731378999689899--99999999986985
Q gi|254780363|r 184 FYRTVTQEDYLY-KGRITNHILS--GEFYRNMDLSPLNPDTDRIMICGSPTM--IVDMKDLLIAKKFR 246 (264)
Q Consensus 184 ~~~~~s~e~~~~-~grit~~i~~--g~l~~~~~~~~~~~~~~~vyiCGpp~M--i~~v~~~L~~~G~~ 246 (264)
++.+=.|+...+ .|+|++++.- +.+... ....++++...|..|..+.- -..+...|.++||+
T Consensus 26 ~vlIDvR~~~ey~~gHIpGAiniP~~~l~~~-~~~~l~~d~~iVvyC~~~~~~~s~~aA~~L~~~Gf~ 92 (110)
T cd01521 26 FVLVDVRSAEAYARGHVPGAINLPHREICEN-ATAKLDKEKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred EEEEECCCHHHHHCCCCCCCCCCCHHHHHHH-HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCC
T ss_conf 8999799989997589887000887888777-897679997189997899864179999999977997
No 111
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 protein; InterPro: IPR005695 Gram-negative bacteria have evolved transport complexes that export macromolecules and toxic substances such as heavy metals across the two membranes of the cell envelope in a single energy coupled step. The process requires (1) a cytoplasmic membrane export system, (2) a membrane fusion protein (MFP), and (3) an outer membrane factor. Phylogenetic analyses reveal that the MFPs cluster in accordance with the type of cytoplasmic membrane transport systems with which they function - proteins in this family are associated with reisistance to heavy metal poisoning. ; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport.
Probab=48.08 E-value=20 Score=16.05 Aligned_cols=91 Identities=18% Similarity=0.258 Sum_probs=49.5
Q ss_pred CCCCCCCCEEEEEEEECCC---CEEEEEEE-CCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCC-------CCEEE-
Q ss_conf 4366531068988884799---86999980-778998399717999984398588766542285768-------86058-
Q gi|254780363|r 7 KLPVNVYCESVISIKHYTD---RLFRFCIT-RPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWD-------DKLEF- 74 (264)
Q Consensus 7 ~~p~~~~~~~V~~v~~~t~---~~~~~~l~-~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~-------~~le~- 74 (264)
+.--..+.+||..|.++-+ +.+..++. .++...++||-|+.+.++...... -+.+| |.+ ..+-|
T Consensus 166 ~~~g~~~~~rV~~v~p~v~~~~R~~kVr~~~~n~~~~lk~G~fV~v~~~~~~~~~-~a~~v---Pe~AV~~~~~~~~VFV 241 (284)
T TIGR00999 166 ENDGKKLPARVDYVGPEVDKSSRTAKVRVLLKNENLKLKPGLFVKVEVETKIEEA-PAIAV---PEDAVQDLGGRKVVFV 241 (284)
T ss_pred CCCCCEEEEEEEEEEEEECCCCCEEEEEEEEECCCCEEECCCCEEEEEECCCCCC-CEEEC---CHHHEEECCCCEEEEE
T ss_conf 3689622169999700136653589999999789864603763389973022352-44765---6057056389589999
Q ss_pred ---------EEEEE--CCCCCCCCCCCCCCCCEEECCC
Q ss_conf ---------99994--3888566100123885100257
Q gi|254780363|r 75 ---------FSIKV--EQGPLTTHLQNIQPGDTILLHK 101 (264)
Q Consensus 75 ---------~i~~v--~~G~~S~~L~~l~~Gd~i~i~~ 101 (264)
--+++ .+|..-.-|+.||+|++|-+.+
T Consensus 242 ~~~~G~f~~~~V~vg~~~ggy~~vl~GLk~G~rvvv~n 279 (284)
T TIGR00999 242 RTEEGGFRPRPVKVGRRLGGYYEVLEGLKPGERVVVEN 279 (284)
T ss_pred EECCCEEEEEEEEEEEECCCEEEEECCCCCCCEEEEEE
T ss_conf 83698388889999976397999963789885698850
No 112
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=47.31 E-value=8.6 Score=18.47 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=34.6
Q ss_pred CCCC-CEEECCCCCCCCCCCCCCC----CCCEEEEEECCCCHHHHHHHHHHHH--HHCCCCCEEEEEECCC
Q ss_conf 2388-5100257887321643223----5866999975867277899887634--1035785799995199
Q gi|254780363|r 91 IQPG-DTILLHKKSTGTLVLDALI----PGNRLYLFSTGTGIAPFVSVIRDPG--TYEKFDEVIVTQTCRQ 154 (264)
Q Consensus 91 l~~G-d~i~i~~~p~G~f~~d~~~----~~~~lilIAgGtGItP~~sii~~~~--~~~~~~~i~L~~g~R~ 154 (264)
.+.| +.+.+-....+..+-+.+. ..++=|+++|.|||||++-++.... +.+.-.|..++||-=+
T Consensus 34 ~~AG~~d~~f~DA~~~~l~de~l~e~lr~~~Pd~v~~GhtaiTp~~y~a~~~lk~~rE~lPN~~~vlGGih 104 (506)
T TIGR02026 34 KDAGYDDVTFLDAMTDPLTDEKLVERLRAHRPDLVLIGHTAITPAIYIAEETLKVARERLPNAIIVLGGIH 104 (506)
T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCC
T ss_conf 74687663776223688874899999972598689972655542018999999999862443553424646
No 113
>pfam10396 TrmE_N GTP-binding protein TrmE N-terminus. This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein.
Probab=46.70 E-value=21 Score=15.91 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=28.7
Q ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf 899968989999999999986985315679950999
Q gi|254780363|r 223 RIMICGSPTMIVDMKDLLIAKKFREGSNSRPGTFVV 258 (264)
Q Consensus 223 ~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~~~~ 258 (264)
++.+=|.+..++.+.+.|.+.|. +.++||.|+-
T Consensus 75 Ei~~HG~~~i~~~il~~l~~~G~---R~A~pGEFT~ 107 (114)
T pfam10396 75 EIHCHGGPAVVQAILQALLKLGA---RLAEPGEFTR 107 (114)
T ss_pred EEEECCCHHHHHHHHHHHHHCCC---EECCCCHHHH
T ss_conf 99824987999999999987698---2259970658
No 114
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=44.16 E-value=23 Score=15.65 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=21.6
Q ss_pred CEEEEEECC-CCHHHHHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 669999758-6727789988763410357857999951998
Q gi|254780363|r 116 NRLYLFSTG-TGIAPFVSVIRDPGTYEKFDEVIVTQTCRQV 155 (264)
Q Consensus 116 ~~lilIAgG-tGItP~~sii~~~~~~~~~~~i~L~~g~R~~ 155 (264)
+..|||.|| -|-..+-.++.+....-.. ++.++|-+...
T Consensus 183 ~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~ 222 (357)
T COG0707 183 KKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN 222 (357)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCC-CEEEEEECCCC
T ss_conf 84899988824279999999999872121-66999976973
No 115
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=44.08 E-value=23 Score=15.65 Aligned_cols=15 Identities=47% Similarity=1.037 Sum_probs=12.5
Q ss_pred EEEEECCHHHHHHHH
Q ss_conf 899968989999999
Q gi|254780363|r 223 RIMICGSPTMIVDMK 237 (264)
Q Consensus 223 ~vyiCGpp~Mi~~v~ 237 (264)
.|++||+|..+..+.
T Consensus 211 VVimC~~p~~ir~l~ 225 (380)
T cd06369 211 VIIMCGTPEDIVNLK 225 (380)
T ss_pred EEEEECCHHHHHHHH
T ss_conf 899968879999998
No 116
>PRK09417 mogA molybdenum cofactor biosynthesis protein; Provisional
Probab=42.62 E-value=9.6 Score=18.17 Aligned_cols=15 Identities=40% Similarity=0.321 Sum_probs=12.5
Q ss_pred CEEEEEECCCCHHHH
Q ss_conf 669999758672778
Q gi|254780363|r 116 NRLYLFSTGTGIAPF 130 (264)
Q Consensus 116 ~~lilIAgGtGItP~ 130 (264)
=++|+..||||++|=
T Consensus 67 ~dLIlTTGGTG~spR 81 (192)
T PRK09417 67 CDLVLTTGGTGPARR 81 (192)
T ss_pred CCEEEECCCCCCCCC
T ss_conf 889997785467976
No 117
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=41.55 E-value=25 Score=15.39 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=27.4
Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 789996898999999999998698531567995099998763
Q gi|254780363|r 222 DRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGTFVVERAFS 263 (264)
Q Consensus 222 ~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~~~~E~~~~ 263 (264)
+.++||.|+.+-.++...+.+.|. ++.+||-++
T Consensus 64 D~v~I~tp~~~H~~~~~~~l~~g~---------~v~~EKP~~ 96 (120)
T pfam01408 64 DAVSVATPPGLHFELALAALEAGK---------HVLVEKPLA 96 (120)
T ss_pred CEEEECCCHHHHHHHHHHHHHHCC---------EEEEECCCC
T ss_conf 989990874618999999998199---------899968981
No 118
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=40.23 E-value=18 Score=16.41 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=31.0
Q ss_pred CCCCCCCC---CCCCCCEEECCCCCCCC-CCCCCCC----------------------------------CCCEEEEEEC
Q ss_conf 88566100---12388510025788732-1643223----------------------------------5866999975
Q gi|254780363|r 82 GPLTTHLQ---NIQPGDTILLHKKSTGT-LVLDALI----------------------------------PGNRLYLFST 123 (264)
Q Consensus 82 G~~S~~L~---~l~~Gd~i~i~~~p~G~-f~~d~~~----------------------------------~~~~lilIAg 123 (264)
.+||+++. +-.||= =+||+||+=+ +.++++. -+-++|+|+|
T Consensus 949 ~KV~~~IA~~R~stPGV-~LISPPPHHDIYSIEDLaQLI~DLK~~Np~ArVsVKLVs~~GVGTIAaGVAKA~AD~I~ISG 1027 (1483)
T PRK11750 949 DKVNPLIAKLRYSVPGV-TLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISG 1027 (1483)
T ss_pred CCCCHHHHHHCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCHHHCCCCEEEECC
T ss_conf 64579999870799997-80489996652127789999999863587754567740236743112011204788899816
Q ss_pred ---CCCHHHHHHHH
Q ss_conf ---86727789988
Q gi|254780363|r 124 ---GTGIAPFVSVI 134 (264)
Q Consensus 124 ---GtGItP~~sii 134 (264)
|||=+|.-||=
T Consensus 1028 ~dGGTGAsp~tSik 1041 (1483)
T PRK11750 1028 YDGGTGASPLTSVK 1041 (1483)
T ss_pred CCCCCCCCCHHHHC
T ss_conf 88987767323420
No 119
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase; InterPro: IPR002082 Aspartate carbamoyltransferase (ATCase) catalyses the formation of carbamoyl-aspartate in the pyrimidine biosynthesis pathway, by the association of aspartate and carbamoyl-phosphate. This is the commitment step in the Escherichia coli pathway and is regulated by feedback inhibition by CTP, the final product of the pathway. The structural organisation of the ATCase protein varies considerably between different organisms. In bacteria such as E. coli, Salmonella typhimurium and Serratia marcescens, the ATCase is a dodecamer of 2 catalytic (c) trimers and 3 regulatory (r) dimers. The catalytic domains are coded for by the pyrB gene, and the regulatory domains by pyrI. In Gram-positive bacteria such as Bacillus subtilis, ATCase exists as a trimer of catalytic subunits, but unlike in E. coli, it neither contains nor binds to regulatory subunits. In eukaryotes, ATCase is found as a single domain in a multifunctional enzyme that contains activity for glutamine amidotransferase, carbamoylphosphate synthetase, dihydroorotase, and aspartate carbamoyltransferase. ; GO: 0004070 aspartate carbamoyltransferase activity, 0006207 'de novo' pyrimidine base biosynthetic process.
Probab=39.27 E-value=27 Score=15.16 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=22.7
Q ss_pred CCEEEEECCHH--HHHHHHHHHHHCCCCCC
Q ss_conf 37899968989--99999999998698531
Q gi|254780363|r 221 TDRIMICGSPT--MIVDMKDLLIAKKFREG 248 (264)
Q Consensus 221 ~~~vyiCGpp~--Mi~~v~~~L~~~G~~~~ 248 (264)
+.++|+|||+. |=+.+.+.+.+.|++-.
T Consensus 201 ~~~v~l~sP~~LrmP~~~~e~~~~~G~~~~ 230 (336)
T TIGR00670 201 NAEVYLISPEELRMPKEILEDLKAKGVKVR 230 (336)
T ss_pred CCEEEEECCHHHHCHHHHHHHHHHCCCEEE
T ss_conf 956998677243061788999852896289
No 120
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=38.33 E-value=25 Score=15.43 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=21.3
Q ss_pred EEEEEEECCCCCCCCEEEEEEEECCCCCCCCC-C-CCCCCCEEECCC
Q ss_conf 87665422857688605899994388856610-0-123885100257
Q gi|254780363|r 57 ISRAYSMASPCWDDKLEFFSIKVEQGPLTTHL-Q-NIQPGDTILLHK 101 (264)
Q Consensus 57 ~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L-~-~l~~Gd~i~i~~ 101 (264)
+-|+|-+-. |..+. ....+|.+..-| . .+++||+|.|++
T Consensus 10 V~RSFDvNk-PGt~~-----~~L~GGViGGSl~~G~lkvgDeIEIrP 50 (113)
T cd03688 10 VIRSFDVNK-PGTEV-----DDLKGGVAGGSLLQGVLKVGDEIEIRP 50 (113)
T ss_pred EEEEEECCC-CCCCH-----HHCCEEEEEEEEEEEEEECCCEEEECC
T ss_conf 998864268-99987-----885300898998787995799999748
No 121
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=37.73 E-value=28 Score=15.00 Aligned_cols=30 Identities=13% Similarity=0.130 Sum_probs=22.4
Q ss_pred CHHCCEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 731378999689899999999999869853
Q gi|254780363|r 218 NPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 218 ~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264)
+++.-.+..|....--..+.+.|.++||+.
T Consensus 54 ~~~~~ivv~C~~G~Rs~~Aa~~L~~~G~~~ 83 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKP 83 (96)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 999979998699846999999999858988
No 122
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=37.49 E-value=29 Score=14.98 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=17.4
Q ss_pred EEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf 9943888566100123885100257
Q gi|254780363|r 77 IKVEQGPLTTHLQNIQPGDTILLHK 101 (264)
Q Consensus 77 ~~v~~G~~S~~L~~l~~Gd~i~i~~ 101 (264)
+++|+| -|.||+.|+.||.+.+-.
T Consensus 268 i~vPg~-kTkYLaEL~aGDeV~iVD 291 (376)
T COG1465 268 IRVPGG-KTKYLAELKAGDEVLIVD 291 (376)
T ss_pred EECCCC-CEEEHHHHCCCCEEEEEE
T ss_conf 994799-647723406998699993
No 123
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket . This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=36.95 E-value=26 Score=15.29 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=41.2
Q ss_pred CCCEEEEEEEEECC---CCCCCCEEEEEEEECCCCCC--CC----CC-CCCCCCEEECCCCCCCCCCCCCCC-----CCC
Q ss_conf 39858876654228---57688605899994388856--61----00-123885100257887321643223-----586
Q gi|254780363|r 52 VNGRRISRAYSMAS---PCWDDKLEFFSIKVEQGPLT--TH----LQ-NIQPGDTILLHKKSTGTLVLDALI-----PGN 116 (264)
Q Consensus 52 ~~g~~~~R~YSiaS---~p~~~~le~~i~~v~~G~~S--~~----L~-~l~~Gd~i~i~~~p~G~f~~d~~~-----~~~ 116 (264)
.+|+.+.++|||-+ .-..+.--++. |+.|..+ .. |- .|.+|| |-|.| ++.+..|..+ ..+
T Consensus 43 ~~gk~i~g~~~ieeFV~~Le~PRKImLM--VkAG~pVdaD~~I~~L~P~LE~GD-iIIDG--GNS~Y~DT~RR~~eL~~~ 117 (480)
T TIGR00873 43 AKGKKIVGAYSIEEFVQSLERPRKIMLM--VKAGAPVDADAVINSLLPLLEKGD-IIIDG--GNSHYKDTERRYKELKAK 117 (480)
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCEEEEE--EECCCCCCHHHHHHHHHHHCCCCC-EEECC--CCCCCCCHHHHHHHHHHC
T ss_conf 7888533432679999850688728887--753885377899999644358998-88758--878846657899999864
Q ss_pred EEEEEECCC
Q ss_conf 699997586
Q gi|254780363|r 117 RLYLFSTGT 125 (264)
Q Consensus 117 ~lilIAgGt 125 (264)
.|.||+.|+
T Consensus 118 Gi~FvG~Gv 126 (480)
T TIGR00873 118 GILFVGVGV 126 (480)
T ss_pred CCCEEEEEE
T ss_conf 981673013
No 124
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=36.77 E-value=15 Score=16.91 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=4.1
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999986985
Q gi|254780363|r 236 MKDLLIAKKFR 246 (264)
Q Consensus 236 v~~~L~~~G~~ 246 (264)
+++.|.++|+.
T Consensus 437 IRdeL~~~GI~ 447 (460)
T PRK00260 437 IRDELKAAGIV 447 (460)
T ss_pred HHHHHHHCCCE
T ss_conf 99999977969
No 125
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein C/molybdopterin-binding protein; Provisional
Probab=36.72 E-value=15 Score=16.83 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=11.5
Q ss_pred CEEEEEECCCCHHHH
Q ss_conf 669999758672778
Q gi|254780363|r 116 NRLYLFSTGTGIAPF 130 (264)
Q Consensus 116 ~~lilIAgGtGItP~ 130 (264)
-++++..||||++|=
T Consensus 206 ~dlIlTtGGTG~s~R 220 (301)
T PRK03604 206 VELIITTGGTGLGPR 220 (301)
T ss_pred CCEEEEECCCCCCCC
T ss_conf 979997089778999
No 126
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=36.54 E-value=24 Score=15.45 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=33.8
Q ss_pred CCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECC-CCHHHHHHHHHHH
Q ss_conf 885661001-2388510025788732164322358669999758-6727789988763
Q gi|254780363|r 82 GPLTTHLQN-IQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTG-TGIAPFVSVIRDP 137 (264)
Q Consensus 82 G~~S~~L~~-l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgG-tGItP~~sii~~~ 137 (264)
|.--..+|. ==||.++-++ .-|||.|++.+ +.++++++| ++|= |-.+|..+
T Consensus 151 GG~p~~phe~~IPG~elG~~--SdGfF~LEElP--~~~v~vGAGYIAvE-LAGvLh~L 203 (475)
T TIGR01421 151 GGKPSIPHEENIPGAELGLD--SDGFFALEELP--KRVVIVGAGYIAVE-LAGVLHGL 203 (475)
T ss_pred CCCCCCCCCCCCCCCCCCCC--CCCEEHHHCCC--CEEEEEECCHHHHH-HHHHHHHC
T ss_conf 87247875467784010577--00200220178--71799907389888-88887312
No 127
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=36.41 E-value=25 Score=15.41 Aligned_cols=10 Identities=20% Similarity=0.345 Sum_probs=3.9
Q ss_pred EEEEECCCCH
Q ss_conf 9999758672
Q gi|254780363|r 118 LYLFSTGTGI 127 (264)
Q Consensus 118 lilIAgGtGI 127 (264)
++.||+-=|+
T Consensus 148 iLvvaa~eg~ 157 (460)
T PTZ00327 148 LLLIAANESC 157 (460)
T ss_pred EEEEECCCCC
T ss_conf 9999868888
No 128
>KOG0072 consensus
Probab=36.27 E-value=30 Score=14.85 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC----CEEEEEECCCCHHHHHH
Q ss_conf 56610012388510025788732164322358----66999975867277899
Q gi|254780363|r 84 LTTHLQNIQPGDTILLHKKSTGTLVLDALIPG----NRLYLFSTGTGIAPFVS 132 (264)
Q Consensus 84 ~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~----~~lilIAgGtGItP~~s 132 (264)
-+..|+.+++|+.+.-. |+-||.+ ... +- ..++-++|||-|+|++-
T Consensus 31 kttIlyrlqvgevvttk-Ptigfnv-e~v-~yKNLk~~vwdLggqtSirPyWR 80 (182)
T KOG0072 31 KTTILYRLQVGEVVTTK-PTIGFNV-ETV-PYKNLKFQVWDLGGQTSIRPYWR 80 (182)
T ss_pred EEEEEEECCCCCCCCCC-CCCCCCC-CCC-CCCCCCCEEEECCCCCCCCHHHH
T ss_conf 06999871258643458-9988680-215-53665512467158643327788
No 129
>KOG2596 consensus
Probab=36.13 E-value=30 Score=14.84 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=39.2
Q ss_pred CCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCC-CCCCCCEEECCCCCCCCCC
Q ss_conf 839971799998439858876654228576886058999943888566100-1238851002578873216
Q gi|254780363|r 39 RFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQ-NIQPGDTILLHKKSTGTLV 108 (264)
Q Consensus 39 ~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~-~l~~Gd~i~i~~~p~G~f~ 108 (264)
.|+||-=+.+-.--.+.+..|-=-++-...+++++.-+-.+-+|....|+. +|.++-++.+..+..|.+.
T Consensus 81 ky~pgnGf~iigaHtDSpcLrlKP~Sk~s~~gylqVgV~tYGGgiw~tWfDRDLsvaGRvivk~~~~~~~~ 151 (479)
T KOG2596 81 KYVPGNGFSIIGAHTDSPCLRLKPVSKRSAEGYLQVGVETYGGGIWHTWFDRDLSVAGRVIVKEAGDGKLI 151 (479)
T ss_pred CCCCCCCEEEEEECCCCCCEEECCCCCCCCCCEEEEEEEECCCCCCHHHCCCCCCCCCEEEEEECCCCCEE
T ss_conf 55479962688742788513303222102356079887622773001010254553306999826886301
No 130
>pfam01959 DHQS 3-dehydroquinate synthase (EC 4.6.1.3). 3-Dehydroquinate synthase is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides.
Probab=36.07 E-value=30 Score=14.83 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=60.3
Q ss_pred CCCCCCEEEEEEEECC--CCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCC-----C---CCCCEEEEEEE
Q ss_conf 6653106898888479--986999980778998399717999984398588766542285-----7---68860589999
Q gi|254780363|r 9 PVNVYCESVISIKHYT--DRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASP-----C---WDDKLEFFSIK 78 (264)
Q Consensus 9 p~~~~~~~V~~v~~~t--~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~-----p---~~~~le~~i~~ 78 (264)
..++..++|++|++.- +++ +. |.-=-+++|+=+.++-...+-.+.++=|+.|+ | +.+-.--| +.
T Consensus 163 ~l~L~~a~Vt~V~~vG~GdRV-CV----Dt~sll~~GEGmLVGS~s~~lfLVhsEt~~s~Yv~~RPFRVNAGaVHaY-v~ 236 (343)
T pfam01959 163 SLDLVPATVTEIEPVGMGDRV-CV----DTCSLMEDGEGMLVGSSSRGLFLVHSETLESPYVASRPFRVNAGAVHAY-VR 236 (343)
T ss_pred CEEEEEEEEEEEEECCCCCEE-EE----EHHHCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCEEEE-EE
T ss_conf 414678999999875762169-98----7123178997279601366279998133368887899723317730579-98
Q ss_pred ECCCCCCCCCCCCCCCCEEECCCCCCCCCCCC---C-CCCCCEEEEEECC
Q ss_conf 43888566100123885100257887321643---2-2358669999758
Q gi|254780363|r 79 VEQGPLTTHLQNIQPGDTILLHKKSTGTLVLD---A-LIPGNRLYLFSTG 124 (264)
Q Consensus 79 v~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d---~-~~~~~~lilIAgG 124 (264)
.++| -|.||..|+.||++.+-. ..|.-..- . ....++++||-+=
T Consensus 237 ~p~g-~T~YLsEL~sGdeVlvvd-~~G~tR~a~VGRvKIE~RPlllI~ae 284 (343)
T pfam01959 237 VPGG-KTRYLSELKAGDEVLVVD-ADGRTREAIVGRVKIERRPLLLIEAE 284 (343)
T ss_pred CCCC-CEEEEHHHCCCCEEEEEE-CCCCEEEEEEEEEEEECCCEEEEEEE
T ss_conf 2899-378730205898699997-89985899975898640756999999
No 131
>TIGR01826 CofD_related conserved hypothetical protein; InterPro: IPR010119 This entry represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (IPR010115 from INTERPRO), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis..
Probab=36.00 E-value=24 Score=15.49 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=9.0
Q ss_pred EEEEECCCCHHHHHHH
Q ss_conf 9999758672778998
Q gi|254780363|r 118 LYLFSTGTGIAPFVSV 133 (264)
Q Consensus 118 lilIAgGtGItP~~si 133 (264)
+|-|+=||=.|-++.-
T Consensus 193 lIilGPGSLyTSI~Pn 208 (331)
T TIGR01826 193 LIILGPGSLYTSIIPN 208 (331)
T ss_pred EEEECCCHHHHHHHHH
T ss_conf 2787772457774243
No 132
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=35.45 E-value=14 Score=17.00 Aligned_cols=14 Identities=50% Similarity=0.750 Sum_probs=12.4
Q ss_pred CEEEEEECCCCHHH
Q ss_conf 66999975867277
Q gi|254780363|r 116 NRLYLFSTGTGIAP 129 (264)
Q Consensus 116 ~~lilIAgGtGItP 129 (264)
-++++..||||++|
T Consensus 62 ~DlIittGGTG~~~ 75 (152)
T cd00886 62 VDLILTTGGTGLAP 75 (152)
T ss_pred CCEEEECCCCCCCC
T ss_conf 88899668555899
No 133
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=34.50 E-value=32 Score=14.67 Aligned_cols=19 Identities=11% Similarity=0.366 Sum_probs=14.3
Q ss_pred CEEEEEECCCCHHHHHHHH
Q ss_conf 6699997586727789988
Q gi|254780363|r 116 NRLYLFSTGTGIAPFVSVI 134 (264)
Q Consensus 116 ~~lilIAgGtGItP~~sii 134 (264)
-++|+|+-|+=+|-++.+|
T Consensus 190 AD~IviGPgSl~TSIlP~L 208 (323)
T COG0391 190 ADLIVIGPGSLFTSILPIL 208 (323)
T ss_pred CCEEEECCCCCHHHHCHHH
T ss_conf 8989986883276643030
No 134
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=33.34 E-value=33 Score=14.55 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=14.1
Q ss_pred CCCCCCC-CCCCCCCEEECCCCCCCCC
Q ss_conf 8856610-0123885100257887321
Q gi|254780363|r 82 GPLTTHL-QNIQPGDTILLHKKSTGTL 107 (264)
Q Consensus 82 G~~S~~L-~~l~~Gd~i~i~~~p~G~f 107 (264)
|.+...+ +.+++||++... ...|+.
T Consensus 152 G~~ARrIv~~~~~g~~l~~G-~r~G~I 177 (214)
T PRK05305 152 GLVARRIVCYVEEGDELERG-ERFGLI 177 (214)
T ss_pred CHHHHHEEECCCCCCEEECC-CEEEEE
T ss_conf 32132246226789788537-777379
No 135
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=33.19 E-value=33 Score=14.53 Aligned_cols=110 Identities=8% Similarity=0.123 Sum_probs=53.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC--
Q ss_conf 699997586727789988763410357857999951998898733566898986445777405884389820454444--
Q gi|254780363|r 117 RLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL-- 194 (264)
Q Consensus 117 ~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~-- 194 (264)
+.+++=|+==..-+.++.+++....+.+++++++|+-...|. +.++..+.. .. ..+.. ..+..+...
T Consensus 297 p~iiLDgAHN~~aa~~L~~~l~~~~~~~k~~~V~g~l~dKD~---~~~l~~L~~------~~-d~~~~-~~~~~~Ra~~~ 365 (416)
T PRK10846 297 PRVIFDVAHNPHAAEYLTGRLKALPKNGRVLAVIGMLHDKDI---AGTLAWLKS------VV-DDWYC-APLEGPRGATA 365 (416)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCH---HHHHHHHHH------HC-CEEEE-ECCCCCCCCCH
T ss_conf 857777785999999999999960779968999841378999---999998664------46-89999-58999777999
Q ss_pred --C-----CCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHH
Q ss_conf --4-----6567754311047885289988731378999689899999999999
Q gi|254780363|r 195 --Y-----KGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLI 241 (264)
Q Consensus 195 --~-----~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~ 241 (264)
. ...+.+.+. ..+...+. .. ..++.+.|||+--++-++++.|.
T Consensus 366 ~~L~~~l~~~~~~~~~~-~A~~~al~--~a-~~~d~IlV~GSlYLvgevl~~Le 415 (416)
T PRK10846 366 EQLLEHLGNGKSFDSVA-QAWDAAMA--DA-KPEDTVLVCGSFHTVAHVMEVID 415 (416)
T ss_pred HHHHHHHHCCCCCCCHH-HHHHHHHH--HC-CCCCEEEEECHHHHHHHHHHHHH
T ss_conf 99999860276669999-99999998--47-99985999713999999999861
No 136
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial; InterPro: IPR006248 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop , . Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) . Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway . The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) , . As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated . IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis . Although IRP2 is homologous to IRP1, IPR2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes . In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica , . In S.enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents mitochondrial aconitase (mAcn), as well as close homologues such as certain bacterial aconitase A (AcnA) enzymes. More information about these proteins can be found at Protein of the Month: Aconitase .; GO: 0003994 aconitate hydratase activity, 0051539 4 iron 4 sulfur cluster binding, 0006099 tricarboxylic acid cycle.
Probab=33.05 E-value=17 Score=16.57 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=14.9
Q ss_pred EEECCCCE-----EEEEEECCCCC-----CCCCCCEE
Q ss_conf 88479986-----99998077899-----83997179
Q gi|254780363|r 20 IKHYTDRL-----FRFCITRPKSF-----RFRSGEFV 46 (264)
Q Consensus 20 v~~~t~~~-----~~~~l~~~~~~-----~f~~GQ~v 46 (264)
..++||.+ ..|+|.+|.+. .|.+||=.
T Consensus 485 FNPlTD~~~~~dGK~FKl~aP~GdelP~~GF~~Gr~~ 521 (761)
T TIGR01340 485 FNPLTDSLKTPDGKEFKLKAPKGDELPEKGFEAGRDT 521 (761)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 5765320018888500468357888788876246651
No 137
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=33.03 E-value=34 Score=14.52 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=22.6
Q ss_pred CHHCCEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 731378999689899999999999869853
Q gi|254780363|r 218 NPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 218 ~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264)
.++...+..|....=-..+.+.|+++||+.
T Consensus 59 ~k~k~ivvyC~~G~RS~~Aa~~L~~~Gf~~ 88 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKN 88 (101)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 438769998599827999999999849870
No 138
>COG4326 Spo0M Sporulation control protein [General function prediction only]
Probab=32.84 E-value=34 Score=14.50 Aligned_cols=17 Identities=24% Similarity=0.106 Sum_probs=11.6
Q ss_pred CCCCCCEEEEEEECCCE
Q ss_conf 83997179999843985
Q gi|254780363|r 39 RFRSGEFVMLGLMVNGR 55 (264)
Q Consensus 39 ~f~~GQ~v~i~~~~~g~ 55 (264)
.+-|||-+...+.+.|.
T Consensus 43 ~~~PG~~v~g~vhv~GG 59 (270)
T COG4326 43 VLYPGQSVKGIVHVYGG 59 (270)
T ss_pred CCCCCCEEEEEEEEECC
T ss_conf 30278557999999358
No 139
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=32.83 E-value=26 Score=15.26 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2778998876341
Q gi|254780363|r 127 IAPFVSVIRDPGT 139 (264)
Q Consensus 127 ItP~~sii~~~~~ 139 (264)
|.-|+.+|+.+..
T Consensus 132 I~~ii~~I~~Li~ 144 (411)
T TIGR03447 132 IDEVIEMVEKLLA 144 (411)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999986
No 140
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=32.37 E-value=35 Score=14.44 Aligned_cols=59 Identities=8% Similarity=0.043 Sum_probs=31.6
Q ss_pred CCCCCCCCC--CCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 656775431--1047885289988731378999689899999999999869853156799509
Q gi|254780363|r 196 KGRITNHIL--SGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGTF 256 (264)
Q Consensus 196 ~grit~~i~--~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~~ 256 (264)
.|+|++.+. .+.+.+.......+++...|.+|....=-..+...|.++||+ ...-.|.+
T Consensus 30 ~GHIpGA~~iP~~~L~~~~~~~~~~k~~~ivl~C~~G~RS~~AA~~L~~~G~~--v~~L~GG~ 90 (95)
T cd01534 30 AGHLPGFRHTPGGQLVQETDHFAPVRGARIVLADDDGVRADMTASWLAQMGWE--VYVLEGGL 90 (95)
T ss_pred CCCCCCCEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCC--EEEECCCC
T ss_conf 38887778888999877765424668983999859998799999999986997--69957861
No 141
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=31.97 E-value=35 Score=14.40 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=23.6
Q ss_pred CCCHHCCEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 88731378999689899999999999869853
Q gi|254780363|r 216 PLNPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 216 ~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264)
.++++...+..|.....-..+...|.++|++.
T Consensus 46 ~~~~~~~iv~~C~~g~rs~~aa~~L~~~G~~~ 77 (89)
T cd00158 46 ELDKDKPIVVYCRSGNRSARAAKLLRKAGGTN 77 (89)
T ss_pred HCCCCCCEEEECCCCCCCHHHHHHHHHCCCCC
T ss_conf 12689877877598981278999999808988
No 142
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=31.91 E-value=31 Score=14.74 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=12.1
Q ss_pred CEEEEEECCCCHHHHHHHH
Q ss_conf 6699997586727789988
Q gi|254780363|r 116 NRLYLFSTGTGIAPFVSVI 134 (264)
Q Consensus 116 ~~lilIAgGtGItP~~sii 134 (264)
-++|.++-|+=.|-++..|
T Consensus 175 ADlIvlgPGSlyTSIiPnL 193 (309)
T cd07044 175 ADNIVIGPGSLYTSILPNI 193 (309)
T ss_pred CCEEEECCCCCHHHHCCCC
T ss_conf 8999987984477766412
No 143
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=31.68 E-value=35 Score=14.43 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=30.9
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 6100123885100257887321643223-58669999758672778998876
Q gi|254780363|r 86 THLQNIQPGDTILLHKKSTGTLVLDALI-PGNRLYLFSTGTGIAPFVSVIRD 136 (264)
Q Consensus 86 ~~L~~l~~Gd~i~i~~~p~G~f~~d~~~-~~~~lilIAgGtGItP~~sii~~ 136 (264)
..+..|++||+|.-.|+.+|.. +... +.+.+++=+.|+=++=-++-|+.
T Consensus 32 ~ml~~L~kGdeVvTiGGl~G~V--~~Vd~e~~tV~Ld~~Gv~l~f~r~AI~~ 81 (120)
T PRK06531 32 NQLNAIQKGDEVVTIGGLFGTV--DEVDTEAKKIVLDVDGVYLTFELSAIKR 81 (120)
T ss_pred HHHHHCCCCCEEEECCCCEEEE--EEEECCCCEEEEEECCEEEEEEHHHHHH
T ss_conf 9997257999899789828999--9992789889998289799998677652
No 144
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=31.59 E-value=36 Score=14.36 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=16.4
Q ss_pred CCCCEEEEEECCCCHHHHHH-HHHHHHHHCCCCCEEEEEE
Q ss_conf 35866999975867277899-8876341035785799995
Q gi|254780363|r 113 IPGNRLYLFSTGTGIAPFVS-VIRDPGTYEKFDEVIVTQT 151 (264)
Q Consensus 113 ~~~~~lilIAgGtGItP~~s-ii~~~~~~~~~~~i~L~~g 151 (264)
++.+++|++|+.-..+-+.+ .++. ....++.++-|
T Consensus 47 p~~~~vVl~c~~g~~A~~AA~~L~~----~g~~~V~~L~G 82 (145)
T cd01535 47 PAAERYVLTCGSSLLARFAAADLAA----LTVKPVFVLEG 82 (145)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH----CCCCCEEECCC
T ss_conf 8888779994895699999999985----55544788747
No 145
>PRK01029 tolB translocation protein TolB; Provisional
Probab=30.94 E-value=36 Score=14.29 Aligned_cols=71 Identities=7% Similarity=0.022 Sum_probs=42.9
Q ss_pred EEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHH
Q ss_conf 54228576886058999943888566100123885100257887321643223586699997586727789
Q gi|254780363|r 61 YSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFV 131 (264)
Q Consensus 61 YSiaS~p~~~~le~~i~~v~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~ 131 (264)
.|++-+|+...+.|+-+..++|.-.=|+++|.-|..-.+..-++-.+...-.++++.|.|...-.|=+=++
T Consensus 184 lSP~wSPdG~~ia~~YvSf~~g~p~Iyi~dL~tg~r~~v~~f~G~n~aP~fSPDG~~lA~~ls~~Gn~dIY 254 (425)
T PRK01029 184 VTPTWMHIGSNFPYLYVSYKYGVPKIFLGSLENTEGKKVLALQGNQFMPTFSPRKKLLAFISDAYGNPDLF 254 (425)
T ss_pred EECCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCEE
T ss_conf 74124689883159999657898569999178872689752699400740889998899999889984467
No 146
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=30.88 E-value=36 Score=14.28 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=19.8
Q ss_pred HCCEEEEE--CCHHHHHHHHHHHHHCCCCCC
Q ss_conf 13789996--898999999999998698531
Q gi|254780363|r 220 DTDRIMIC--GSPTMIVDMKDLLIAKKFREG 248 (264)
Q Consensus 220 ~~~~vyiC--Gpp~Mi~~v~~~L~~~G~~~~ 248 (264)
+.-.|..| |..++-..+.+.|.++||+.=
T Consensus 50 d~~Ivvyc~~g~~~~s~~Aa~~L~~~Gy~~V 80 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDV 80 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 9829999699996299999999998699686
No 147
>KOG3141 consensus
Probab=30.54 E-value=27 Score=15.14 Aligned_cols=12 Identities=17% Similarity=0.457 Sum_probs=6.5
Q ss_pred CCCCCCEEECCC
Q ss_conf 123885100257
Q gi|254780363|r 90 NIQPGDTILLHK 101 (264)
Q Consensus 90 ~l~~Gd~i~i~~ 101 (264)
+-++||.|.+.+
T Consensus 162 hFk~GqyVDV~g 173 (310)
T KOG3141 162 HFKPGQYVDVTG 173 (310)
T ss_pred HCCCCCEEEEEE
T ss_conf 147875488774
No 148
>KOG1530 consensus
Probab=30.48 E-value=37 Score=14.24 Aligned_cols=51 Identities=20% Similarity=0.414 Sum_probs=36.8
Q ss_pred CCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEE
Q ss_conf 1047885289988731378999689899999999999869853156799509
Q gi|254780363|r 205 SGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSNSRPGTF 256 (264)
Q Consensus 205 ~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~~~~g~~ 256 (264)
.-+..++++......++..++-|-+..+--.+.++|.+.|| ++..-.+|.+
T Consensus 74 ~~eF~kqvg~~kp~~d~eiIf~C~SG~Rs~~A~~~l~s~Gy-knv~ny~Gs~ 124 (136)
T KOG1530 74 NPEFLKQVGSSKPPHDKEIIFGCASGVRSLKATKILVSAGY-KNVGNYPGSY 124 (136)
T ss_pred CHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCCCCCH
T ss_conf 88899884345898777479995468613678999997484-5414357619
No 149
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=30.37 E-value=37 Score=14.23 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=11.3
Q ss_pred HCCCCCCCCCCCCEEEEEE
Q ss_conf 8698531567995099998
Q gi|254780363|r 242 AKKFREGSNSRPGTFVVER 260 (264)
Q Consensus 242 ~~G~~~~~~~~~g~~~~E~ 260 (264)
.+|++.+...+.|.|+.|.
T Consensus 27 ~LGi~~GeTt~DG~fTl~~ 45 (80)
T cd03083 27 ELGIRFGEVDEDGMVGLFF 45 (80)
T ss_pred HHCCCCCCCCCCCCEEEEE
T ss_conf 9689989688999789998
No 150
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=29.97 E-value=38 Score=14.18 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=19.1
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 9996898999999999998698531
Q gi|254780363|r 224 IMICGSPTMIVDMKDLLIAKKFREG 248 (264)
Q Consensus 224 vyiCGpp~Mi~~v~~~L~~~G~~~~ 248 (264)
+.---|..-+.++.++|++.||+.-
T Consensus 376 ~v~~~~t~tv~~ai~iLre~GfdQ~ 400 (527)
T TIGR01137 376 LVTVHPTETVGDAIEILREYGFDQL 400 (527)
T ss_pred CEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 3454676408999999997487307
No 151
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=29.92 E-value=38 Score=14.18 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=23.5
Q ss_pred CCHHCCEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 87313789996898999999999998698531
Q gi|254780363|r 217 LNPDTDRIMICGSPTMIVDMKDLLIAKKFREG 248 (264)
Q Consensus 217 ~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~ 248 (264)
++++...+++|....=-..+.+.|.++||+.-
T Consensus 61 ~~~d~~ivv~C~sG~RS~~Aa~~L~~~Gf~nV 92 (117)
T cd01522 61 VGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNV 92 (117)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCE
T ss_conf 59998699988998159999999998598777
No 152
>pfam08749 DUF1790 Family of unknown function (DUF1790). Family of uncharacterized proteins ranging in length from 150 to 210 amino acids.
Probab=29.79 E-value=38 Score=14.16 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=52.4
Q ss_pred EEEEECCCEEEEEEEEEC--CCCCCCCEEEEEE---EECCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCC---CCCE
Q ss_conf 999843985887665422--8576886058999---9438885661001-23885100257887321643223---5866
Q gi|254780363|r 47 MLGLMVNGRRISRAYSMA--SPCWDDKLEFFSI---KVEQGPLTTHLQN-IQPGDTILLHKKSTGTLVLDALI---PGNR 117 (264)
Q Consensus 47 ~i~~~~~g~~~~R~YSia--S~p~~~~le~~i~---~v~~G~~S~~L~~-l~~Gd~i~i~~~p~G~f~~d~~~---~~~~ 117 (264)
.+.+.+.|++ +.|.+. -.+..+-|.+... ++|.++.+.-..- ..+++.+++ |+|.++... --|+
T Consensus 21 el~~~v~G~w--~~Y~l~~~w~e~~~~L~~~~~~d~~vp~~k~~~~~~ll~~iN~~lwl-----GhF~~~~~~g~i~fR~ 93 (145)
T pfam08749 21 ELAMAVEGQW--RDYSLFFAWREEDEALQLICYFDMKVPEGKRPEVAELLNLINEQLWI-----GHFELWEEDGLIRYRY 93 (145)
T ss_pred EEEEEECCEE--EEEEEEEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC-----CCEEECCCCCEEEEEE
T ss_conf 6999978487--46889999856768699999847768940089999999999744761-----7737518999699999
Q ss_pred EEEEECCCCHHHHH--HHHHHHH-HHCCC-CC-EEEEEECCCHHHH
Q ss_conf 99997586727789--9887634-10357-85-7999951998898
Q gi|254780363|r 118 LYLFSTGTGIAPFV--SVIRDPG-TYEKF-DE-VIVTQTCRQVVEL 158 (264)
Q Consensus 118 lilIAgGtGItP~~--sii~~~~-~~~~~-~~-i~L~~g~R~~~dl 158 (264)
-+.+.||.+++|-. .|+.... .-+++ .- -.++||.+++++.
T Consensus 94 ~l~l~g~~~~s~~qie~lv~~av~~cer~yPafq~v~~g~~sp~eA 139 (145)
T pfam08749 94 GLLLAGGQEASPEQLENMLEAAVDACERFYPAFQFVVWGGKSPEEA 139 (145)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 8771898889999999999999999998877878763189899999
No 153
>pfam01272 GreA_GreB Transcription elongation factor, GreA/GreB, C-term. This domain has a FKBP-like fold.
Probab=28.19 E-value=40 Score=13.98 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 71799998439858876654228576886058999943888566100123885100257887321
Q gi|254780363|r 43 GEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTL 107 (264)
Q Consensus 43 GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~l~~Gd~i~i~~~p~G~f 107 (264)
|-.|.+.-..+++. ..|+|+.+.. ...+--.+.+. -.+...|-..++||++.+.. |.|..
T Consensus 9 Gs~V~i~~~~~~~~--~~~~iVg~~e-a~~~~~~IS~~-SPlg~ALlG~~~Gd~v~~~~-p~G~~ 68 (77)
T pfam01272 9 GSTVTLEDLDDGEE--ETYTIVGPDE-ADPSKGKISVL-SPLGRALLGKKVGDEVEVTA-PSGEK 68 (77)
T ss_pred CCEEEEEECCCCCE--EEEEEECHHH-CCCCCCCCCCC-CHHHHHHHCCCCCCEEEEEC-CCCCE
T ss_conf 98999999999989--9999979689-28257922888-98899973999999999996-99879
No 154
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=27.61 E-value=41 Score=13.92 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCC-C--CCCCEEEEEECC--CCHHHHH
Q ss_conf 5661001238851002578873216432-2--358669999758--6727789
Q gi|254780363|r 84 LTTHLQNIQPGDTILLHKKSTGTLVLDA-L--IPGNRLYLFSTG--TGIAPFV 131 (264)
Q Consensus 84 ~S~~L~~l~~Gd~i~i~~~p~G~f~~d~-~--~~~~~lilIAgG--tGItP~~ 131 (264)
|=..|=.+=.|...-| +|-||.=++.. + -+-.+|+||||| .|+.-++
T Consensus 247 VQQALLKi~EGTvA~v-PPqGGRKHP~~~~iqiDTs~ILFICGGAF~GL~~iI 298 (452)
T TIGR00382 247 VQQALLKIIEGTVANV-PPQGGRKHPQQEFIQIDTSNILFICGGAFVGLEKII 298 (452)
T ss_pred HHHHHHHHHHCCEEEE-CCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHHH
T ss_conf 9999998760323431-754488688657688647640011054344489999
No 155
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component; InterPro: IPR011297 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . This entry represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (hydroquinone-O-beta-D-glucopyranoside) . These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system.
Probab=27.58 E-value=41 Score=13.91 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=52.9
Q ss_pred CCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEE-----EEEEEEECCCCCCCCEEEEEE----E
Q ss_conf 3665310689888847998699998077899839971799998439858-----876654228576886058999----9
Q gi|254780363|r 8 LPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRR-----ISRAYSMASPCWDDKLEFFSI----K 78 (264)
Q Consensus 8 ~p~~~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~-----~~R~YSiaS~p~~~~le~~i~----~ 78 (264)
.-..+...+++...+..|++||=.+- .+++.-.|=.= .|.-|.||+- ..+++-|-| ++..|++|= .
T Consensus 511 ~~~~P~~Ge~~~L~eV~D~vFSsG~m-G~G~Ai~P~eG-~~~AP~dG~v~~VF~T~HAiGi~~---~nG~E~LIHvGIDT 585 (660)
T TIGR01995 511 ELYAPVAGEVVPLNEVPDEVFSSGAM-GKGVAILPSEG-EVVAPVDGTVTAVFPTKHAIGIRS---DNGVEILIHVGIDT 585 (660)
T ss_pred HCCCCEEEEEEECCCCCCHHHHHHHC-CCCEEEEECCC-EEECCCCCEEEEEECCCCEEEECC---CCCEEEEEEEEEEE
T ss_conf 20576013467505688412302230-68458971587-788233778999974862274126---89728999841234
Q ss_pred EC-CCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 43-888566100-1238851002578873216432235
Q gi|254780363|r 79 VE-QGPLTTHLQ-NIQPGDTILLHKKSTGTLVLDALIP 114 (264)
Q Consensus 79 v~-~G~~S~~L~-~l~~Gd~i~i~~~p~G~f~~d~~~~ 114 (264)
|+ +| .|.. +.+.||+|.-. +..+.|-+|....
T Consensus 586 V~L~G---~~Fe~~V~~Gd~v~~G-q~L~~~D~d~I~~ 619 (660)
T TIGR01995 586 VELKG---EYFEILVKVGDKVKAG-QLLLTFDLDKIKE 619 (660)
T ss_pred EEECC---EEEEEEEEECCEEEEC-CCCCEEEHHHHHH
T ss_conf 56545---0122214566787506-6312210689961
No 156
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=26.66 E-value=17 Score=16.53 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCEEEEEECCCCHHHH
Q ss_conf 3888566100123885100257887321643-22358669999758672778
Q gi|254780363|r 80 EQGPLTTHLQNIQPGDTILLHKKSTGTLVLD-ALIPGNRLYLFSTGTGIAPF 130 (264)
Q Consensus 80 ~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d-~~~~~~~lilIAgGtGItP~ 130 (264)
.+|..-+||+++-.-|+|...|..+-.|.+- .++.+..++-+|+-||..|+
T Consensus 466 gdGVIHswLNrmllpDtvgtGGDSHTRfpiGisFpAgSGlVAfAaatGvmpl 517 (852)
T COG1049 466 GDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPL 517 (852)
T ss_pred CCCCHHHHHHHCCCCCCEECCCCCCCCCCCCCEECCCCCHHHHHHHCCCCCC
T ss_conf 9963889887444874300388655554233000588731345675186457
No 157
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=25.58 E-value=41 Score=13.95 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=10.7
Q ss_pred EEEEECCCCHHHHH
Q ss_conf 99997586727789
Q gi|254780363|r 118 LYLFSTGTGIAPFV 131 (264)
Q Consensus 118 lilIAgGtGItP~~ 131 (264)
-+++|-|+|||-=-
T Consensus 4 kIlVACGsGIATST 17 (94)
T PRK10310 4 KIIVACGGAVATST 17 (94)
T ss_pred EEEEECCCCHHHHH
T ss_conf 59998588375999
No 158
>pfam10061 DUF2299 Uncharacterized conserved protein (DUF2299). Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.40 E-value=37 Score=14.21 Aligned_cols=38 Identities=21% Similarity=0.480 Sum_probs=21.7
Q ss_pred EECCCCCCCCCCCCCCC-CCC-EEEEEECCCCHHHHH-HHHH
Q ss_conf 00257887321643223-586-699997586727789-9887
Q gi|254780363|r 97 ILLHKKSTGTLVLDALI-PGN-RLYLFSTGTGIAPFV-SVIR 135 (264)
Q Consensus 97 i~i~~~p~G~f~~d~~~-~~~-~lilIAgGtGItP~~-sii~ 135 (264)
+.++.|++|. .++=.. .++ ++++|+.||.+.|-- +.++
T Consensus 24 ~~v~~P~~g~-~~~Vv~Pk~rsd~v~v~~~~~vd~~hq~~m~ 64 (137)
T pfam10061 24 FVVSPPQGGV-VVDVIRPRGKSDFYIVTMGIALSPEHRSALM 64 (137)
T ss_pred EEEECCCCCC-EEEEEEECCCCCEEEEEEEEEECHHHHHHHH
T ss_conf 9981799994-7999998798989999999998899999998
No 159
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=24.91 E-value=46 Score=13.60 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=23.5
Q ss_pred CCHHCCEEEEECCHHHHHHHHHHHHHCCCCC
Q ss_conf 8731378999689899999999999869853
Q gi|254780363|r 217 LNPDTDRIMICGSPTMIVDMKDLLIAKKFRE 247 (264)
Q Consensus 217 ~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~ 247 (264)
.+++...+..|....--..+.+.|.++||+.
T Consensus 55 ~~~d~~iv~~C~~G~rS~~aa~~L~~~G~~~ 85 (101)
T cd01528 55 DNPDKDIVVLCHHGGRSMQVAQWLLRQGFEN 85 (101)
T ss_pred HCCCCCEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 1689808998389815999999999859977
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=24.85 E-value=46 Score=13.59 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=5.5
Q ss_pred CEEEEECCHHH
Q ss_conf 78999689899
Q gi|254780363|r 222 DRIMICGSPTM 232 (264)
Q Consensus 222 ~~vyiCGpp~M 232 (264)
-+|-|.|||.=
T Consensus 217 ~~v~i~G~PN~ 227 (445)
T PRK05291 217 LKVVIAGRPNV 227 (445)
T ss_pred CEEEEECCCCC
T ss_conf 86998899987
No 161
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase; InterPro: IPR011183 Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyses the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (2.7.1.90 from EC). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes . IPR012828 from INTERPRO represents the ATP-dependent 6-phosphofructokinase enzyme contained within Phosphofructokinase. This entry contains primarily bacterial, plant alpha, and plant beta sequences. These may be dimeric nonallosteric enzymes (bacteria) or allosteric heterotetramers (plants) . For additional information please see , , , .; GO: 0005524 ATP binding, 0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex.
Probab=24.72 E-value=47 Score=13.57 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=26.2
Q ss_pred CCC-CCCCCCEEECCCC-CCCCCCC----CCCC---CCCEE-EEEECCCCHHHH
Q ss_conf 100-1238851002578-8732164----3223---58669-999758672778
Q gi|254780363|r 87 HLQ-NIQPGDTILLHKK-STGTLVL----DALI---PGNRL-YLFSTGTGIAPF 130 (264)
Q Consensus 87 ~L~-~l~~Gd~i~i~~~-p~G~f~~----d~~~---~~~~l-ilIAgGtGItP~ 130 (264)
..+ .|++| .|+=.|| |+|+.++ |.++ |...| =|+.|+-||.-=
T Consensus 70 ~~~~~l~~G-viLSGGqAPGGHNVi~GLFD~lk~~np~SkLyGF~~Gp~GL~~~ 122 (566)
T TIGR02477 70 DEHQPLKVG-VILSGGQAPGGHNVISGLFDALKKLNPESKLYGFLGGPEGLLDN 122 (566)
T ss_pred HCCCCCEEE-EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 216875688-98757989771146777899999737767200102074443158
No 162
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=24.49 E-value=17 Score=16.43 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCEEEEEECCCCHHHH
Q ss_conf 3888566100123885100257887321643-22358669999758672778
Q gi|254780363|r 80 EQGPLTTHLQNIQPGDTILLHKKSTGTLVLD-ALIPGNRLYLFSTGTGIAPF 130 (264)
Q Consensus 80 ~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d-~~~~~~~lilIAgGtGItP~ 130 (264)
.+|..-+||+++-.-|+|...|-.+-.|.+- .++.+..+|-+|+-||..|+
T Consensus 464 gdgvIHswLNrm~lpDtvgtGGDSHTRfp~GisFpagSGlVAfaaatG~mpl 515 (841)
T PRK09238 464 GDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPL 515 (841)
T ss_pred CCCCHHHHHHHCCCCCCEECCCCCCCCCCCCEEECCCCCHHHHHHHCCCCCC
T ss_conf 9860899986142775233278655554233010588730256776187667
No 163
>pfam01933 UPF0052 Uncharacterized protein family UPF0052.
Probab=24.14 E-value=48 Score=13.50 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=12.0
Q ss_pred CEEEEEECCCCHHHHHHHH
Q ss_conf 6699997586727789988
Q gi|254780363|r 116 NRLYLFSTGTGIAPFVSVI 134 (264)
Q Consensus 116 ~~lilIAgGtGItP~~sii 134 (264)
-++|.||-|+=+|-++.++
T Consensus 173 AD~IiigPgs~~tSI~P~L 191 (291)
T pfam01933 173 ADLIVLGPGSLFTSIGPNL 191 (291)
T ss_pred CCEEEECCCCCHHHHCCHH
T ss_conf 9989986996166643130
No 164
>PRK03612 spermidine synthase; Provisional
Probab=24.11 E-value=48 Score=13.50 Aligned_cols=22 Identities=27% Similarity=0.662 Sum_probs=17.3
Q ss_pred CCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 86699997586727789988763
Q gi|254780363|r 115 GNRLYLFSTGTGIAPFVSVIRDP 137 (264)
Q Consensus 115 ~~~lilIAgGtGItP~~sii~~~ 137 (264)
.++++.|+||.|+| .+.++|+.
T Consensus 294 p~~VLiiGGGdG~a-~revLk~~ 315 (516)
T PRK03612 294 ARRVLILGGGDGLA-LREVLKYP 315 (516)
T ss_pred CCEEEEECCCCCHH-HHHHHCCC
T ss_conf 77389983776087-99986489
No 165
>pfam00551 Formyl_trans_N Formyl transferase. This family includes the following members. Glycinamide ribonucleotide transformylase catalyses the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Probab=23.61 E-value=49 Score=13.43 Aligned_cols=37 Identities=14% Similarity=0.204 Sum_probs=19.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCH
Q ss_conf 99997586727789988763410357857999951998
Q gi|254780363|r 118 LYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQV 155 (264)
Q Consensus 118 lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~ 155 (264)
+.+++.|+| +=+.++++.....+...++.++.+++..
T Consensus 3 iavl~SG~G-snl~~Il~a~~~~~l~~~I~~Visn~~~ 39 (181)
T pfam00551 3 IAVLISGTG-SNLQALLDALRKGGHEVEIVAVVTNKDK 39 (181)
T ss_pred EEEEECCCC-HHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 999990796-6599999999819999889999958957
No 166
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=23.47 E-value=49 Score=13.42 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=23.3
Q ss_pred CCHHCCEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 87313789996898999999999998698531
Q gi|254780363|r 217 LNPDTDRIMICGSPTMIVDMKDLLIAKKFREG 248 (264)
Q Consensus 217 ~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~ 248 (264)
+++++..++.|....=-..+.++|.++||+.-
T Consensus 58 ~~~~~~iv~~C~~G~RS~~aa~~L~~~Gy~~v 89 (103)
T cd01447 58 FAEDKPFVFYCASGWRSALAGKTLQDMGLKPV 89 (103)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHCCCCCE
T ss_conf 18888799986998059999999998598443
No 167
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=23.36 E-value=49 Score=13.40 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=21.3
Q ss_pred CEEEEEECCCCHHHHHHHH-----HHHHHHCCCCCEEEEEECCCHHH
Q ss_conf 6699997586727789988-----76341035785799995199889
Q gi|254780363|r 116 NRLYLFSTGTGIAPFVSVI-----RDPGTYEKFDEVIVTQTCRQVVE 157 (264)
Q Consensus 116 ~~lilIAgGtGItP~~sii-----~~~~~~~~~~~i~L~~g~R~~~d 157 (264)
-++|.++-|+=.|-++.-+ .+.....+..+|.+.--...+.+
T Consensus 176 ADlIv~gPGSlyTSiiPnLlv~gi~~AI~~s~a~kV~i~Nl~tqpge 222 (308)
T cd07187 176 ADLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICNLMTQPGE 222 (308)
T ss_pred CCEEEECCCCCHHHHCCHHCCHHHHHHHHHCCCCEEEEEECCCCCHH
T ss_conf 99899879840665511422366999999679978999617899123
No 168
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; InterPro: IPR010137 This entry describes LpxA, an enzyme for the biosynthesis of lipid A, a component of lipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat.; GO: 0008780 acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, 0008610 lipid biosynthetic process.
Probab=23.13 E-value=26 Score=15.30 Aligned_cols=39 Identities=10% Similarity=0.428 Sum_probs=21.9
Q ss_pred CCCEEEEEE--ECCCCCCCCCCCEEEEEEECCCEEEEEEE-EECC
Q ss_conf 998699998--07789983997179999843985887665-4228
Q gi|254780363|r 24 TDRLFRFCI--TRPKSFRFRSGEFVMLGLMVNGRRISRAY-SMAS 65 (264)
Q Consensus 24 t~~~~~~~l--~~~~~~~f~~GQ~v~i~~~~~g~~~~R~Y-SiaS 65 (264)
+-++|.+-. ..|..++|+.++ -.| .+.+.-+-|-| ||-+
T Consensus 52 ~~~i~p~A~iG~~PQdlky~GE~-t~l--~IG~~n~IRE~VTi~~ 93 (257)
T TIGR01852 52 GTKIFPGAVIGGEPQDLKYKGER-TEL--IIGDNNTIREFVTINR 93 (257)
T ss_pred CCEEECCEEECCCCCCCEECCCC-CEE--EECCCCEEEEEEEECC
T ss_conf 98880760767988565014870-179--9889656975578506
No 169
>PRK01581 speE spermidine synthase; Validated
Probab=23.12 E-value=50 Score=13.37 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=20.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 86699997586727789988763410357857999
Q gi|254780363|r 115 GNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVT 149 (264)
Q Consensus 115 ~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~ 149 (264)
.++++.|+||-|+| .+-++++ ..-+.|+|+
T Consensus 140 ~~rVLILGGGDGLA-lREVLKy----p~Ve~VTLV 169 (363)
T PRK01581 140 PKRVLILGGGDGLA-LREVLKY----ETVLHVDLV 169 (363)
T ss_pred CCEEEEEECCCHHH-HHHHHCC----CCCCEEEEE
T ss_conf 77389980764399-9998717----985627899
No 170
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=22.98 E-value=50 Score=13.35 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=35.5
Q ss_pred CCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 399717999984398588766542285768860589999438885661001238851002578873216
Q gi|254780363|r 40 FRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLV 108 (264)
Q Consensus 40 f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~ 108 (264)
..-|.-|.+.-..+|+. +.|+|+.+-. ....--.+.+. -.+...|-..++||++.+.. |+|...
T Consensus 79 V~~Gs~V~~~~~~~ge~--~~~~iVg~~e-ad~~~~~IS~~-SPig~aLlGk~vGd~v~v~~-p~g~~~ 142 (151)
T COG0782 79 VTFGSTVTLENLDDGEE--VTYTIVGPDE-ADPAKGKISVD-SPLGRALLGKKVGDTVEVNT-PGGEKE 142 (151)
T ss_pred EECCCEEEEEECCCCCE--EEEEEECCCC-CCCCCCCEECC-CHHHHHHHCCCCCCEEEEEC-CCCEEE
T ss_conf 84698899998799968--9999982410-36014933045-97789972899999899835-996079
No 171
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=21.81 E-value=53 Score=13.20 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=22.8
Q ss_pred CCHHCCEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 87313789996898999999999998698531
Q gi|254780363|r 217 LNPDTDRIMICGSPTMIVDMKDLLIAKKFREG 248 (264)
Q Consensus 217 ~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~ 248 (264)
++++...+++|....--..+.+.|.++|+.+-
T Consensus 51 ~~~~~~vv~~C~~G~RS~~aa~~L~~~g~~~v 82 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEA 82 (99)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCE
T ss_conf 57898699987997369999999998599888
No 172
>TIGR02124 hypE hydrogenase expression/formation protein HypE; InterPro: IPR011854 This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (IPR006283 from INTERPRO) and other enzymes..
Probab=21.62 E-value=41 Score=13.95 Aligned_cols=131 Identities=18% Similarity=0.306 Sum_probs=66.9
Q ss_pred CCCCCCCEEECCCCCCCC--CCCCCCCC----CCEEEEEECCCCHHHHHHHHHHHHHHCCC-CCEEEEEECCCHHHHHHH
Q ss_conf 012388510025788732--16432235----86699997586727789988763410357-857999951998898733
Q gi|254780363|r 89 QNIQPGDTILLHKKSTGT--LVLDALIP----GNRLYLFSTGTGIAPFVSVIRDPGTYEKF-DEVIVTQTCRQVVELQYG 161 (264)
Q Consensus 89 ~~l~~Gd~i~i~~~p~G~--f~~d~~~~----~~~lilIAgGtGItP~~sii~~~~~~~~~-~~i~L~~g~R~~~dl~y~ 161 (264)
+++++||.|.++| +-|. ..+-..+. ..+| -|=.+|+..||..+...... .+| |..|.+--=--.
T Consensus 164 ~~~~~GD~Ii~sG-~iG~HG~~Il~~Regl~f~~~i-----~SDCapL~~lv~~ll~~~g~~~~v---~~~RD~TRGGLA 234 (345)
T TIGR02124 164 HNIQPGDVIIVSG-SIGDHGAAILAVREGLGFETNI-----ESDCAPLNGLVEALLAVGGYEPAV---HAMRDATRGGLA 234 (345)
T ss_pred CCCCCCCEEEECC-CCHHHHHHHHHHHHCCCCCCCC-----CCHHHHHHHHHHHHHHCCCCCCCC---EEEECCCCCCHH
T ss_conf 5414576689816-8406789988765025525673-----332776589999998437987142---376167855047
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHH---HHHCCCCCCCHHC-CEEEEECCHHHHHHHH
Q ss_conf 56689898644577740588438982045444446567754311047---8852899887313-7899968989999999
Q gi|254780363|r 162 IDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEF---YRNMDLSPLNPDT-DRIMICGSPTMIVDMK 237 (264)
Q Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l---~~~~~~~~~~~~~-~~vyiCGpp~Mi~~v~ 237 (264)
.- ++++++ ....... ++-++=+- +.++ -+-++++++.-.| -.+-+|=||.--++|.
T Consensus 235 ~v-LNE~A~------~sg~~i~----l~E~~iPV---------~eeV~gaCE~LGldPl~lANEG~~v~~V~~E~A~~vL 294 (345)
T TIGR02124 235 AV-LNEIAE------SSGVGIE----LEEEKIPV---------KEEVKGACELLGLDPLYLANEGKLVLAVPPEAAEKVL 294 (345)
T ss_pred HH-HHHHHH------HHCCCEE----EEECCCCC---------CHHHHHHHHHHCCCHHHHHCCCEEEEEECHHHHHHHH
T ss_conf 89-999999------6199279----98524788---------3789999986170325420476289982837799999
Q ss_pred HHHHHCCCCCC
Q ss_conf 99998698531
Q gi|254780363|r 238 DLLIAKKFREG 248 (264)
Q Consensus 238 ~~L~~~G~~~~ 248 (264)
++|++..+-+.
T Consensus 295 e~lk~hp~G~~ 305 (345)
T TIGR02124 295 EILKSHPLGKD 305 (345)
T ss_pred HHHHHCCCCCC
T ss_conf 99860776433
No 173
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=21.54 E-value=54 Score=13.17 Aligned_cols=10 Identities=20% Similarity=0.022 Sum_probs=5.3
Q ss_pred EEEEECCCCC
Q ss_conf 6654228576
Q gi|254780363|r 59 RAYSMASPCW 68 (264)
Q Consensus 59 R~YSiaS~p~ 68 (264)
|.||+...|+
T Consensus 84 r~is~VD~PG 93 (410)
T PRK04000 84 RRVSFVDAPG 93 (410)
T ss_pred CEEEEEECCC
T ss_conf 1699997988
No 174
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=21.20 E-value=54 Score=13.12 Aligned_cols=23 Identities=30% Similarity=0.717 Sum_probs=17.9
Q ss_pred CCCEEEEEECC------CCHHHHHH-HHHH
Q ss_conf 58669999758------67277899-8876
Q gi|254780363|r 114 PGNRLYLFSTG------TGIAPFVS-VIRD 136 (264)
Q Consensus 114 ~~~~lilIAgG------tGItP~~s-ii~~ 136 (264)
++-+++||++| ||=||..| ++++
T Consensus 105 ~GaDmVFitAGmGGGTGTGAAPVvA~~AK~ 134 (365)
T TIGR00065 105 EGADMVFITAGMGGGTGTGAAPVVAKIAKE 134 (365)
T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 388818997258668666635789999975
No 175
>pfam01079 Hint Hint module. This is an alignment of the Hint module in the Hedgehog proteins. It does not include any Inteins which also possess the Hint module.
Probab=21.00 E-value=55 Score=13.09 Aligned_cols=19 Identities=32% Similarity=0.775 Sum_probs=11.4
Q ss_pred CCCCCCCEEECCCCCCCCC
Q ss_conf 0123885100257887321
Q gi|254780363|r 89 QNIQPGDTILLHKKSTGTL 107 (264)
Q Consensus 89 ~~l~~Gd~i~i~~~p~G~f 107 (264)
.++++||.|.+.....+.+
T Consensus 104 s~V~~Gd~v~v~~~~~~~l 122 (214)
T pfam01079 104 SDVRPGDYVLVQDNGGGGL 122 (214)
T ss_pred CCCCCCCEEEEEECCCCCE
T ss_conf 2277898899997899838
No 176
>PRK09330 cell division protein FtsZ; Validated
Probab=20.84 E-value=55 Score=13.07 Aligned_cols=23 Identities=30% Similarity=0.717 Sum_probs=17.3
Q ss_pred CCCEEEEEEC------CCCHHHHHH-HHHH
Q ss_conf 5866999975------867277899-8876
Q gi|254780363|r 114 PGNRLYLFST------GTGIAPFVS-VIRD 136 (264)
Q Consensus 114 ~~~~lilIAg------GtGItP~~s-ii~~ 136 (264)
.+.++|||++ |||-||.++ +.++
T Consensus 95 ~g~dmvFItAGmGGGTGTGAaPviA~iAke 124 (387)
T PRK09330 95 EGADMVFITAGMGGGTGTGAAPVVAEIAKE 124 (387)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 789879996266788777604899998855
No 177
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=20.73 E-value=56 Score=13.06 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=35.5
Q ss_pred CCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 39971799998439858876654228576886058999943888566100123885100257887321
Q gi|254780363|r 40 FRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTL 107 (264)
Q Consensus 40 f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~l~~Gd~i~i~~~p~G~f 107 (264)
-..|-.|.|.-..+|+. ..|+|+++... ..+--.+.+. -.+...|-..++||++.+.. |.|..
T Consensus 86 V~~Gs~V~l~d~~~g~~--~~y~iVG~~Ea-d~~~g~IS~~-SPlg~ALlGk~~Gd~V~v~~-P~G~~ 148 (157)
T PRK00226 86 VKFGATVTIYDLDTDEE--ETYQIVGDDEA-DIKEGKISVN-SPIARALIGKKVGDTVTVKA-PGGEY 148 (157)
T ss_pred EECCCEEEEEECCCCCE--EEEEEECCCCC-CCCCCEECCC-CHHHHHHHCCCCCCEEEEEC-CCCCE
T ss_conf 20675899998589967--99999133224-5667652477-98999982899999899984-99878
No 178
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=20.31 E-value=57 Score=13.00 Aligned_cols=117 Identities=10% Similarity=0.080 Sum_probs=53.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHCCCCC-EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 669999758672778998876341035785-7999951998898733566898986445777405884389820454444
Q gi|254780363|r 116 NRLYLFSTGTGIAPFVSVIRDPGTYEKFDE-VIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL 194 (264)
Q Consensus 116 ~~lilIAgGtGItP~~sii~~~~~~~~~~~-i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~~~ 194 (264)
++.++|=|+=-=.-...+.+.+.......+ +++++|+-+.+|.. .++.. +... ...+..++ ++.+...
T Consensus 300 ~p~i~lDgAHNp~aa~~La~~l~~~~~~~~~~~~v~g~l~dKd~~---~~l~~------L~~~-~~~~~~~~-~~~~ra~ 368 (427)
T COG0285 300 NPLILLDGAHNPHAARALAETLKTLFNDRPRLTLVFGMLKDKDIA---GMLAA------LLPI-VDEIYTTP-LPWPRAL 368 (427)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHH---HHHHH------HHCC-CCEEEECC-CCCCCCC
T ss_conf 974999888999999999999997733577528999832588889---99997------4064-76899825-8973548
Q ss_pred ----CCCCCC--CCCCCCHHHHHCCCC-CCCHHCCEEEEECCHHHHHHHHHHHHHC
Q ss_conf ----465677--543110478852899-8873137899968989999999999986
Q gi|254780363|r 195 ----YKGRIT--NHILSGEFYRNMDLS-PLNPDTDRIMICGSPTMIVDMKDLLIAK 243 (264)
Q Consensus 195 ----~~grit--~~i~~g~l~~~~~~~-~~~~~~~~vyiCGpp~Mi~~v~~~L~~~ 243 (264)
...... .......+.+.+... ....+++.+.|||+--++.++++.+...
T Consensus 369 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ilV~GSly~~~ev~~~~~~~ 424 (427)
T COG0285 369 DAEELLAFAGERGGVELDDVAEALELALEKADEDDLVLVTGSLYLAGEVLELLKKR 424 (427)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCC
T ss_conf 99999999876357850039999999997157997499982399999999996335
Done!