RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62] (264 letters) >gnl|CDD|182844 PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional. Length = 248 Score = 132 bits (333), Expect = 1e-31 Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 20/245 (8%) Query: 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFS 76 V ++++TD LF + P F +G+F LGL ++G R+ RAYS + + LEF+ Sbjct: 9 VTKVQNWTDALFSLTVHAPVD-PFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYL 67 Query: 77 IKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRD 136 + V +G L+ L ++PGD + + ++ G VLD + L++ +TGT I P++S++++ Sbjct: 68 VTVPEGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQE 127 Query: 137 PGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL-- 194 E+F +++ R +L Y + +M E+ Q KL+ V++E Sbjct: 128 GKDLERFKNLVLVHAARYAADLSY-LPLMQELEQR------YEGKLRIQTVVSRETAPGS 180 Query: 195 YKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLL-----IAKKFREGS 249 GR+ I SGE + L P++ +T +M+CG+P M+ D + LL + K R Sbjct: 181 LTGRVPALIESGELEAAVGL-PMDAETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRR-- 237 Query: 250 NSRPG 254 RPG Sbjct: 238 --RPG 240 >gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. Length = 352 Score = 56.8 bits (137), Expect = 6e-09 Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 31/217 (14%) Query: 38 FRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHL-QNIQPGDT 96 +RF G+ + L V+G + R+YS+ S ++ K+ G +T I+PGDT Sbjct: 31 YRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWANDEIRPGDT 90 Query: 97 ILLHKKSTGTLVLDALIP-GNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQV 155 + + G D P + G+GI P +S+ E ++ R Sbjct: 91 LEV-MAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIA----------ETVLAAEPRST 139 Query: 156 VELQYG----IDVMHEISQDEI--LKDLIGQKLKFYRTVTQEDY---LYKGRITNHILSG 206 L YG VM +E+ LKD Q+ +++E L GR+ G Sbjct: 140 FTLVYGNRRTASVMF---AEELADLKDKHPQRFHLAHVLSREPREAPLLSGRL-----DG 191 Query: 207 EFYRNMDLSPLNPDT-DRIMICGSPTMIVDMKDLLIA 242 E + S ++ D D +CG M+ D + L Sbjct: 192 ERLAALLDSLIDVDRADEWFLCGPQAMVDDAEQALTG 228 >gnl|CDD|181398 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional. Length = 289 Score = 48.6 bits (116), Expect = 2e-06 Identities = 58/255 (22%), Positives = 100/255 (39%), Gaps = 32/255 (12%) Query: 9 PVNVYCESVISIKHYTDR--LFRFCITRP---KSFRFRSGEFVMLGLMVNGR-RISRAYS 62 P ++ ++ + T+R LF P +SF F+ G+FV + + G IS Sbjct: 2 PYALHDAKILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGEVPISIC-- 59 Query: 63 MASPCWDDKLEFFSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFS 122 +SP E + G +TT + ++ GD + + +D + G L L + Sbjct: 60 -SSPTRKGFFELCIRRA--GRVTTVIHRLKEGDIVGVRGPYGNGFPVDEM-EGMDLLLIA 115 Query: 123 TGTGIAPFVSVIR---DPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLI- 178 G G+AP SV+ D K+ + + + Y D++ DE++KDL Sbjct: 116 GGLGMAPLRSVLLYAMDNRW--KYGNITLIYGAK------YYEDLLF---YDELIKDLAE 164 Query: 179 GQKLKFYRTVTQEDYL--YKGRITNHILSGEFYRNMDLSP---LNPDTDRIMICGSPTMI 233 + +K ++VT++ G I DL +P ICG P M Sbjct: 165 AENVKIIQSVTRDPEWPGCHGLPQGFIERVCKGVVTDLFREANTDPKNTYAAICGPPVMY 224 Query: 234 VDMKDLLIAKKFREG 248 + LI + +R Sbjct: 225 KFVFKELINRGYRPE 239 >gnl|CDD|168200 PRK05713, PRK05713, hypothetical protein; Provisional. Length = 312 Score = 44.3 bits (105), Expect = 3e-05 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 6/104 (5%) Query: 34 RPKSFRFRSGEFVMLGLMVNGRRISRAYSMAS-PCWDDKLEFFSIKVEQGPLTTHLQNIQ 92 RP R+R+G+ ++L ++R YS+AS P D LEF G + +Q Sbjct: 115 RP--LRYRAGQHLVLWTAGG---VARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQLQ 169 Query: 93 PGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRD 136 GD + L + G L D L+L + GTG+AP ++R+ Sbjct: 170 VGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILRE 213 >gnl|CDD|177894 PLN02252, PLN02252, nitrate reductase [NADPH]. Length = 888 Score = 42.0 bits (99), Expect = 2e-04 Identities = 70/261 (26%), Positives = 104/261 (39%), Gaps = 53/261 (20%) Query: 4 VSPKLPVNVYCESVISIKHYTDRLFRFCITRPKS-FRFRSGEFVMLGLMVNGRRISRAYS 62 ++P+ + IS+ H RLFRF + G+ V L +NG+ RAY+ Sbjct: 629 LNPREKIPCRLVEKISLSHDV-RLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYT 687 Query: 63 MASPCWDDKLEFFS--IKV----------EQGPLTTHLQNIQPGDTI-----LLHKKSTG 105 S DD++ F IKV G ++ +L ++ GDTI L H + G Sbjct: 688 PTSS--DDEVGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAG 745 Query: 106 T---LVLDALIPGNRLYLFSTGTGIAPFVSVI----RDPGTYEKFDEVIVTQTCRQV--V 156 LV +L + + GTGI P VI RDP E E+ + R + Sbjct: 746 RGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRDP---EDKTEMSLVYANRTEDDI 802 Query: 157 ELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQ---EDYLY-KGRITNHILSGEFYRNM 212 L+ +D D +LK + V+Q E + Y GR+T +L Sbjct: 803 LLREELDRWAAEHPD---------RLKVWYVVSQVKREGWKYSVGRVTEAMLREH----- 848 Query: 213 DLSPLNPDTDRIMICGSPTMI 233 L +T +M CG P MI Sbjct: 849 -LPEGGDETLALM-CGPPPMI 867 >gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated. Length = 339 Score = 39.1 bits (92), Expect = 0.001 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 25/110 (22%) Query: 36 KSFRFRSGEFVMLGLMVNGRRISRAYSMAS-PCWDDKLEFFSIKVEQGPLTTHLQNIQPG 94 + ++ +G+++ ++ +G+R R+YS+A+ P LE + G T H+ Sbjct: 128 ERLQYLAGQYIEF-ILKDGKR--RSYSIANAPHSGGPLELHIRHMPGGVFTDHVFGALKE 184 Query: 95 DTIL----------LHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVI 134 IL L + S +VL A +GTG AP S++ Sbjct: 185 RDILRIEGPLGTFFLREDSDKPIVLLA-----------SGTGFAPIKSIV 223 >gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional. Length = 340 Score = 37.0 bits (86), Expect = 0.005 Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 25/196 (12%) Query: 50 LMVNGRRISRAYSMAS-PCWDDKLEFFSIKVEQGPLTTHL-QNIQPGDTILLHKKSTGTL 107 L + G R+YS A+ P ++L+F + G ++ +L + Q GD IL + G Sbjct: 145 LQIPGTDDWRSYSFANRPNATNQLQFLIRLLPDGVMSNYLRERCQVGDEILF-EAPLGAF 203 Query: 108 VLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHE 167 L + L + GTG++ F+ ++ DE + Q C V L YG+ + Sbjct: 204 YLREV--ERPLVFVAGGTGLSAFLGML---------DE-LAEQGCSPPVHLYYGVRHAAD 251 Query: 168 ISQDEILKDLIGQKLKFYR---TVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRI 224 + + + L ++L +R V++ ++G+ G + + D + L + Sbjct: 252 LCELQRLAAY-AERLPNFRYHPVVSKASADWQGK------RGYIHEHFDKAQLRDQAFDM 304 Query: 225 MICGSPTMIVDMKDLL 240 +CG P M+ +K L Sbjct: 305 YLCGPPPMVEAVKQWL 320 >gnl|CDD|178828 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed. Length = 250 Score = 33.3 bits (77), Expect = 0.065 Identities = 51/251 (20%), Positives = 83/251 (33%), Gaps = 74/251 (29%) Query: 8 LPVNVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVML---GLMVNGRRISRAYSMA 64 P N+ ++ K ++ + K F + G+FVM+ G+ R + Sbjct: 3 KPENMK---IVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLER-----PI- 53 Query: 65 SPCWDDKLEF-FSIKVEQGPLTTHLQNIQPGDTILLHKKSTGTL--VLDALIPGNRLYLF 121 S DK E + G T L ++ GD + G L D G ++ L Sbjct: 54 SISDIDKNEITILYRKV-GEGTKKLSKLKEGDEL----DIRGPLGNGFDLEEIGGKVLLV 108 Query: 122 STGTGIAPFVSVI---RDPGTYEKF-------DEVIVTQTCRQVVELQYGIDVMHEISQD 171 G G+AP + + G DEVI + +V ++ Sbjct: 109 GGGIGVAPLYELAKELKKKGVEVTTVLGARTKDEVIFEEEFAKVGDVY------------ 156 Query: 172 EILKDLIGQKLKFYRTVTQED--YLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGS 229 VT +D Y +KG +T+ L L+ + D I CG Sbjct: 157 ----------------VTTDDGSYGFKGFVTD-----------VLDELDSEYDAIYSCGP 189 Query: 230 PTMIVDMKDLL 240 M MK ++ Sbjct: 190 EIM---MKKVV 197 >gnl|CDD|181300 PRK08221, PRK08221, anaerobic sulfite reductase subunit B; Provisional. Length = 263 Score = 32.6 bits (75), Expect = 0.10 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 46/228 (20%) Query: 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFS 76 ++ I +TD + F + + G+F + L ++ A S D ++ Sbjct: 12 ILDITKHTDIEYTFRVEV--DGPVKPGQFFEVSL----PKVGEAPISVSDYGDGYIDLTI 65 Query: 77 IKVEQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIR- 135 +V G +T + N++ GD + L +D G L + + GTG+AP ++R Sbjct: 66 RRV--GKVTDEIFNLKEGDKLFLRGPYGNGFPVDTY-KGKELIVVAGGTGVAPVKGLMRY 122 Query: 136 ---DPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEIL--KDLIGQKLKFYRTVT- 189 +P + D +I+ G + D+IL +DL + K +T Sbjct: 123 FYENPQEIKSLD-LIL------------GFK-----NPDDILFKEDLKRWREKINLILTL 164 Query: 190 ---QEDYLYK-GRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMI 233 +E Y G +T +I + L + D ++++ G P M+ Sbjct: 165 DEGEEGYRGNVGLVTKYI------PELTLK--DIDNMQVIVVGPPIMM 204 >gnl|CDD|181209 PRK08051, fre, FMN reductase; Validated. Length = 232 Score = 32.1 bits (74), Expect = 0.17 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%) Query: 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMAS-PCWDDKLE 73 V S++ TD ++R + F FR+G+++M+ V G + R +S+AS P +E Sbjct: 7 VTSVEAITDTVYRVRLVPEAPFSFRAGQYLMV---VMGEKDKRPFSIASTPREKGFIE 61 >gnl|CDD|178663 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional. Length = 307 Score = 31.6 bits (72), Expect = 0.21 Identities = 16/48 (33%), Positives = 25/48 (52%) Query: 88 LQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIR 135 L + +PGD + + S ++L P + +TGTGIAPF +R Sbjct: 129 LCDAKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLR 176 >gnl|CDD|173293 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase; Provisional. Length = 253 Score = 31.1 bits (70), Expect = 0.31 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 14/83 (16%) Query: 148 VTQTCRQVVEL-QYGIDVMHEISQDEILKDLIGQKLKFYRTVTQE-DYLYKG----RITN 201 +T+ CRQV EL Q G ++S D + + L+ Q L Y T D L + R++N Sbjct: 152 ITRACRQVAELVQQG-----KLSADAVNEQLVEQHL--YTADTPPPDLLIRTSGEMRLSN 204 Query: 202 HILSGEFYRNMDLSP-LNPDTDR 223 +L Y M + L PD DR Sbjct: 205 FLLWQMAYTEMYFTDILWPDFDR 227 >gnl|CDD|177929 PLN02292, PLN02292, ferric-chelate reductase. Length = 702 Score = 30.6 bits (69), Expect = 0.39 Identities = 11/19 (57%), Positives = 15/19 (78%) Query: 118 LYLFSTGTGIAPFVSVIRD 136 L + S G+GI PF+S+IRD Sbjct: 434 LVMVSGGSGITPFISIIRD 452 >gnl|CDD|178662 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional. Length = 367 Score = 29.6 bits (66), Expect = 0.84 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 7/57 (12%) Query: 81 QGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGN---RLYLFSTGTGIAPFVSVI 134 +G + L +++PG + K TG + + L+P + + + +TGTGIAPF S + Sbjct: 182 KGVCSNFLCDLKPGAEV----KITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFL 234 >gnl|CDD|150050 pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria. Length = 275 Score = 29.8 bits (67), Expect = 0.84 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 23/136 (16%) Query: 121 FSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVEL-QYGIDVMHEISQDEILKDLIG 179 G G A + + + + V + + + + + +D+IG Sbjct: 41 VGAGPGTALWAA----SELWPGLEPATVIDASEAALAIGEELARHIPALKHAWRARDVIG 96 Query: 180 QKLKFYRTVTQEDYLYKGRITNHILSGEFY---RNMDLSPLNPDTDRIMIC---GSPT-- 231 L F L +++L E R + L + ++ G+P Sbjct: 97 AALDFE-----PADLV---TISYVL-DELTPASREKVIDNLWAKAAQALVIVEPGTPAGW 147 Query: 232 -MIVDMKDLLIAKKFR 246 +++ ++ LIA F Sbjct: 148 RRVLEARERLIAAGFH 163 >gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase. Length = 699 Score = 29.6 bits (66), Expect = 0.92 Identities = 13/21 (61%), Positives = 16/21 (76%) Query: 116 NRLYLFSTGTGIAPFVSVIRD 136 N L L S G+GI PF+SVIR+ Sbjct: 413 NSLILVSGGSGITPFISVIRE 433 >gnl|CDD|163496 TIGR03784, marine_sortase, sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004). Length = 174 Score = 29.3 bits (66), Expect = 0.95 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 15/49 (30%) Query: 87 HLQNIQPGDTILL--------HKKSTGTLVLDA-----LIP--GNRLYL 120 LQ ++PGD I L + T T V+D +P ++L L Sbjct: 105 FLQELRPGDVIRLQTPDGQWQSYQVTATRVVDESETGLDLPADDSQLVL 153 >gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional. Length = 1167 Score = 28.6 bits (64), Expect = 1.7 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 14/67 (20%) Query: 80 EQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFST-----------GTGIA 128 ++G L + ++PGD++ + K+ G L ++ P ++ ++F GTG+A Sbjct: 988 DKGTLKEWISALRPGDSVEM--KACGGLRIE-RRPADKQFVFRGHVIRKLALIAGGTGVA 1044 Query: 129 PFVSVIR 135 P + +IR Sbjct: 1045 PMLQIIR 1051 >gnl|CDD|177590 PHA03349, PHA03349, tegument protein UL16; Provisional. Length = 343 Score = 28.5 bits (64), Expect = 1.9 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%) Query: 32 ITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMAS 65 +TRPK+ R F +L L NG RAY + + Sbjct: 67 LTRPKALRLPPKTFHVLFL-FNG---ERAYCLTA 96 >gnl|CDD|180474 PRK06214, PRK06214, sulfite reductase; Provisional. Length = 530 Score = 28.1 bits (63), Expect = 2.2 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%) Query: 82 GPLTTHL-QNIQPGDTI--LLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRD 136 G +T L + + PG + + K L D P + + GTGIAPF + + + Sbjct: 350 GVASTFLGERLAPGTRVRVYVQKAHGFALPAD---PNTPIIMVGPGTGIAPFRAFLHE 404 >gnl|CDD|184153 PRK13572, PRK13572, anthranilate synthase component I; Provisional. Length = 435 Score = 28.2 bits (63), Expect = 2.5 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 11/115 (9%) Query: 119 YLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLI 178 +++ T F S+ + E IV + R +E + G E+L Sbjct: 120 FVYDHVTRKFYFHSL-NNNPEELFNAEKIVEKAKRFEIEEEDG--------GSEVLG-CD 169 Query: 179 GQKLKFYRTVTQ-EDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTM 232 + +F V + ++Y+Y G + +LS E+ DLSP + I SP M Sbjct: 170 ADREEFVEMVEKAKEYIYSGDVFQVVLSREYRLKTDLSPFQLYRNLREINPSPYM 224 >gnl|CDD|162841 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This enzyme, formally named (1->4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis. Length = 825 Score = 27.8 bits (62), Expect = 2.8 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 11/73 (15%) Query: 161 GIDVMHEISQDEILKDLIGQK--LKFYRTVTQ-----EDYLY--KGRITNHILSGEFYRN 211 G D ++E+ + +L D G++ YR T E+ L K + H+L+ E R Sbjct: 302 GYDFLNEV--NGVLVDAAGEEPLTALYRNFTGRPQDIEETLRRAKRLVLRHLLASEIRRL 359 Query: 212 MDLSPLNPDTDRI 224 L + D Sbjct: 360 ARLLARLAELDPA 372 >gnl|CDD|107163 PHA02275, PHA02275, hypothetical protein. Length = 125 Score = 27.8 bits (61), Expect = 3.3 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Query: 144 DEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNH 202 + ++ C V L+ G+ M +I D +K + R V ++Y + ++H Sbjct: 63 SDGVIENIC-NVEGLEDGLSKMKKIFDDSNF-----EKHYYNRVVDHDEYYWIDYGSHH 115 >gnl|CDD|140300 PTZ00274, PTZ00274, cytochrome b5 reductase; Provisional. Length = 325 Score = 27.6 bits (61), Expect = 3.4 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 8/139 (5%) Query: 17 VISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLE-FF 75 VI I H T LFRF + + F + + + + + +P + + +F Sbjct: 60 VIPITHDT-ALFRFLLHSEEEFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYF 118 Query: 76 SIKVEQ---GPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVS 132 I V++ G +T HL + GD +L +S + + + + GTG P + Sbjct: 119 DIIVKRKKDGLMTNHLFGMHVGDKLLF--RSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQ 176 Query: 133 VIRDPGTYEKFDEVIVTQT 151 +IR T E +D V +T Sbjct: 177 IIRHSLT-EPWDSGEVDRT 194 >gnl|CDD|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase. Length = 703 Score = 27.4 bits (61), Expect = 3.5 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 209 YRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIA 242 Y P+T +M GSP +I M D L+ Sbjct: 575 YPPQRFELNIPETPLVMR-GSPELIAQMLDKLVD 607 >gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional. Length = 695 Score = 27.7 bits (61), Expect = 3.5 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%) Query: 119 YLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGID 163 YL T G PF +++RD ++K I+ + +Q ++ YGID Sbjct: 462 YLLGTVAGPHPFPAMVRD---FQK----IIGEEAKQQLQDWYGID 499 >gnl|CDD|131920 TIGR02873, spore_ylxY, probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model. Length = 268 Score = 27.5 bits (61), Expect = 4.1 Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 88 LQNIQPGDTILLHKKSTGTLVLDALIPG 115 L I PG +L+H ++ T L+ +I Sbjct: 225 LSKIHPGAMVLMHPTASSTEGLEEMITI 252 >gnl|CDD|149229 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain. Length = 148 Score = 26.9 bits (60), Expect = 5.2 Identities = 10/19 (52%), Positives = 15/19 (78%) Query: 118 LYLFSTGTGIAPFVSVIRD 136 L L + G+GI PF+S++RD Sbjct: 4 LLLVAGGSGITPFISILRD 22 >gnl|CDD|173143 PRK14680, PRK14680, hypothetical protein; Provisional. Length = 134 Score = 27.1 bits (60), Expect = 5.2 Identities = 11/36 (30%), Positives = 16/36 (44%) Query: 56 RISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQNI 91 R +RA+ A WD F + V Q T L++ Sbjct: 79 RAARAWLAAHDAWDKPCRFDLVCVTQRGATLTLEHY 114 >gnl|CDD|177735 PLN00123, PLN00123, isocitrate dehydrogenase (NAD+). Length = 360 Score = 26.8 bits (59), Expect = 6.1 Identities = 10/24 (41%), Positives = 14/24 (58%) Query: 142 KFDEVIVTQTCRQVVELQYGIDVM 165 K++E+IV C Q+V DVM Sbjct: 220 KYNEIIVDNCCMQLVSKPEQFDVM 243 >gnl|CDD|149274 pfam08124, Lyase_8_N, Polysaccharide lyase family 8, N terminal alpha-helical domain. This family consists of a group of secreted bacterial lyase enzymes EC:4.2.2.1 capable of acting on hyaluronan and chondroitin in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. Length = 319 Score = 26.9 bits (60), Expect = 6.2 Identities = 8/12 (66%), Positives = 9/12 (75%) Query: 51 MVNGRRISRAYS 62 MV GR ISRA + Sbjct: 274 MVRGRSISRANA 285 >gnl|CDD|163406 TIGR03694, exosort_acyl, putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production. Length = 241 Score = 26.5 bits (59), Expect = 6.6 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 34/91 (37%) Query: 29 RFCITRPKSFRFRSGE-------------------------FVMLGLMVNGRRISRA--- 60 R ++ K FR R GE + LGL + +S A Sbjct: 116 RLAVS--KDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGI 173 Query: 61 ---YSMASPCWDDKLEFFSIKVEQ-GPLTTH 87 Y++ P L F I+ Q GP + Sbjct: 174 THWYAIMEPRLARLLSRFGIQFRQVGPPVDY 204 >gnl|CDD|149225 pfam08021, FAD_binding_9, Siderophore-interacting FAD-binding domain. Length = 116 Score = 26.5 bits (59), Expect = 7.6 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 29/111 (26%) Query: 16 SVISIKHYTDRLFRFCITRPKSFRFRSGEF----------------VMLGLMVNG----- 54 +V+ + + + R T P F S V L +G Sbjct: 1 TVVRVTRLSPHMRRITFTGPGLAGFPSDGPDDHIKLFFPPPGQTPPVPPTLGEDGIWLPG 60 Query: 55 --RRISRAYSMASPCWD-DKLEF---FSIKVEQGPLTTHLQNIQPGDTILL 99 R I R Y++ S +D E F + ++GP + QPGDT+ + Sbjct: 61 EQRPIMRTYTVRS--FDPAAGELDIDFVLHGDEGPASRWAARAQPGDTLGI 109 >gnl|CDD|118516 pfam09987, DUF2226, Uncharacterized protein conserved in archaea (DUF2226). This domain, found in various hypothetical archaeal proteins, has no known function. Length = 252 Score = 26.5 bits (58), Expect = 7.7 Identities = 12/43 (27%), Positives = 20/43 (46%) Query: 137 PGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIG 179 P YE+ +E + R+ + + GI E S + IL+D Sbjct: 135 PTEYEETEEEVEEPESREELLKKLGIKEPDEESVEAILEDYFE 177 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.324 0.141 0.421 Gapped Lambda K H 0.267 0.0668 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,390,426 Number of extensions: 281876 Number of successful extensions: 635 Number of sequences better than 10.0: 1 Number of HSP's gapped: 626 Number of HSP's successfully gapped: 38 Length of query: 264 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 172 Effective length of database: 4,006,537 Effective search space: 689124364 Effective search space used: 689124364 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 56 (25.5 bits)