HHsearch alignment for GI: 254780364 and conserved domain: PRK00054
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed.
Probab=99.96 E-value=4.3e-28 Score=191.61 Aligned_cols=171 Identities=18% Similarity=0.261 Sum_probs=133.6
Q ss_pred CCEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 42117898998479986999980789997389857880314586110556432056677760179996157676531000
Q gi|254780364|r 11 DVYCESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQN 90 (224)
Q Consensus 11 ~~~~~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~ 90 (224)
T Consensus 3 ~p~~~~Iv~~~~~~~~i~~l~l~~~--~~~~PGQFv~l~~~~~~~~l~rP~Si~~~~-~~~~~i~v~~v--G~gT~~l~~ 77 (248)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGD--FVFKPGQFVMVWVWDDPGLLERPISISDID-KNENTILYRAV--GEGTKKLSK 77 (248)
T ss_pred CCEEEEEEEEEEECCCEEEEEECCC--CCCCCCCEEEEEECCCCCCCCEEEEEEECC-CCEEEEEEEEE--CHHHHHHHC
T ss_conf 7704799999995799799998466--877999779999788898443641999638-98589999998--879999961
Q ss_pred CCCCCCCEECCCCCCC-CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 0222221001688753-356446768817999658680889999998653088633899994058645430488899887
Q gi|254780364|r 91 IQPGDTILLHKKSTGD-LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEIS 169 (224)
Q Consensus 91 ~~~gd~~~~~~~p~g~-f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~ 169 (224)
T Consensus 78 l~~Gd~l~v~-GPlGngf~~~~--~~~~~llVaGGiGiAPl~~l~~~l~~~--~~~v~~i~G~r~~~~l~~~~el~~~~- 151 (248)
T PRK00054 78 LKEGDELDIR-GPLGNGFDLEK--IGGKVLLVGGGIGVAPLYELAKQLKAK--GVEVTTVLGARTKDEVIFEDEFEKYG- 151 (248)
T ss_pred CCCCCEEEEE-CCCCCCCCCCC--CCCEEEEEECCCCCCCHHHHHHHHHHC--CCCEEEEEECCCHHHCCHHHHHHHHC-
T ss_conf 8899989745-25688723677--896199996767457689999999972--99779999758879811799998654-
Q ss_pred HHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHC
Q ss_conf 533210124687599981057887766721687858
Q gi|254780364|r 170 QDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILS 205 (224)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~~ 205 (224)
T Consensus 152 -----------~~-~i-~tddGs~G~~G~vt~~l~~ 174 (248)
T PRK00054 152 -----------DV-YV-ATDDGSYGFKGFVTDVLDE 174 (248)
T ss_pred -----------CE-EE-EECCCCCCCCCEECHHHHH
T ss_conf -----------76-79-8067867665171031232