HHsearch alignment for GI: 254780364 and conserved domain: PTZ00306
>PTZ00306 NADH-dependent fumarate reductase; Provisional.
Probab=99.63 E-value=3.2e-14 Score=106.74 Aligned_cols=176 Identities=16% Similarity=0.223 Sum_probs=132.7
Q ss_pred EEEEEECCCCCC---CCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 999980789997---38985788031458611055643205667776017999615767653100002222210016887
Q gi|254780364|r 28 FRFCITRPKSFR---FRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKST 104 (224)
Q Consensus 28 ~~l~l~~p~~~~---f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~~~~i~~~~~g~~s~~l~~~~~gd~~~~~~~p~ 104 (224)
T Consensus 933 ~~l~f~~p~~~q~~g~~~~~~~~~r~~~~g~~~~~~~~p~~~p~~~g~~~~~~~~~~~~~~~w~~~~~pg~~ve~k-~~~ 1011 (1167)
T PTZ00306 933 RVLRFNLPGALQRSGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARGDKGTLKEWISALRPGDSVEMK-ACG 1011 (1167)
T ss_pred EEEEEECCCHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCCHHHHHHHCCCCCEEEEE-CCC
T ss_conf 6999746625643564422069995022575024555563367767447899634777689899835999806763-157
Q ss_pred CC----------CCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 53----------356446768817999658680889999998653088---63389999405864543048889988753
Q gi|254780364|r 105 GD----------LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKK---FDEVIITHTCGRVAELQYGIDVMHEISQD 171 (224)
Q Consensus 105 g~----------f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~---~~~i~l~~g~R~~~dl~~~~el~~l~~~~ 171 (224)
T Consensus 1012 g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~apm~q~~~aa~~~~~~~~~~~~~~~y~a~~~~~~~~r~~l~~~~~~~ 1090 (1167)
T PTZ00306 1012 GLRIERRPADKQFVFR-GHVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAEDVSELTYRELLESYRKEN 1090 (1167)
T ss_pred CEEEECCHHHHHHHHC-CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCHHHCHHHHHHHHHHHHC
T ss_conf 4688436355332213-541001578825876326999999985286546500167786613010120999999988758
Q ss_pred HHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCHHHHCC
Q ss_conf 321012468759998105788776672168785860699678
Q gi|254780364|r 172 EILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMG 213 (224)
Q Consensus 172 ~~~~~~~~~~~~~~~~isre~~~~~GrIt~~i~~g~l~~~~~ 213 (224)
T Consensus 1091 ~-------~~f~~~f~~~~p~~~w~~~v~-~~~~~~~~~~~~ 1124 (1167)
T PTZ00306 1091 P-------GKFKCHFVLNNPPEGWTDGVG-FVDRALLQSALQ 1124 (1167)
T ss_pred C-------CCEEEEEEECCCCCCCCCCCC-CHHHHHHHHCCC
T ss_conf 8-------764789980699855436544-000687862469