HHsearch alignment for GI: 254780364 and conserved domain: cd06186
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.91 E-value=1.9e-23 Score=163.16 Aligned_cols=145 Identities=22% Similarity=0.297 Sum_probs=108.6
Q ss_pred EEECC-CCEEEEEEECCCCCCCCCCCEEEECCCCC-CCCEEEEEEECCCCCC--CCCEEEEEEECCCCCCCCCC-CCCCC
Q ss_conf 98479-98699998078999738985788031458-6110556432056677--76017999615767653100-00222
Q gi|254780364|r 20 VKHYT-DRLFRFCITRPKSFRFRSGEFVMLGLIVN-GRPIFRAYSIASPCRD--DKLEFCSIKVDKGFFTTYLQ-NIQPG 94 (224)
Q Consensus 20 ~~~~T-~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~-g~~~~R~ySiaS~p~~--~~~~~~i~~~~~g~~s~~l~-~~~~g 94 (224)
T Consensus 4 ~~~~~~~~~~~l~i~~~~~~~~~pGq~v~l~~p~~~~~~~~HPFTias~p~~~~~~l~~~I-r~~~G~-t~~l~~~~~~~ 81 (210)
T cd06186 4 VELLPDSDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLII-RAKKGF-TTRLLRKALKS 81 (210)
T ss_pred EEECCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEE-EECCCC-HHHHHHHHHHC
T ss_conf 9987999979999967998977899769999888897311377066506778997699999-957982-55899998617
Q ss_pred ----CC-CEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHC----CCCCEEEEEEECCCHHHH-HHHHHH
Q ss_conf ----22-10016887533564467688179996586808899999986530----886338999940586454-304888
Q gi|254780364|r 95 ----DT-ILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETY----KKFDEVIITHTCGRVAEL-QYGIDV 164 (224)
Q Consensus 95 ----d~-~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~----~~~~~i~l~~g~R~~~dl-~~~~el 164 (224)
T Consensus 82 ~~~~~~~~v~veGPyG~~~~~~-~~~~~vlliaGG~GItp~ls~l~~l~~~~~~~~~~~~i~lvw~~R~~~~~~~~~~~l 160 (210)
T cd06186 82 PGGGVSLKVLVEGPYGSSSEDL-LSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDEL 160 (210)
T ss_pred CCCCCCEEEEEECCCCCCCCCH-HHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHH
T ss_conf 7877744999987999986562-117818999137570368999999986002468884199999979999999999999
Q ss_pred HHH
Q ss_conf 998
Q gi|254780364|r 165 MHE 167 (224)
Q Consensus 165 ~~l 167 (224)
T Consensus 161 ~~~ 163 (210)
T cd06186 161 RAA 163 (210)
T ss_pred HHH
T ss_conf 876