HHsearch alignment for GI: 254780364 and conserved domain: cd06189

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=100.00  E-value=3.5e-40  Score=265.63  Aligned_cols=177  Identities=19%  Similarity=0.289  Sum_probs=154.5

Q ss_pred             EEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCC-CCCEEEEEEECCCCCCCCCCC-CC
Q ss_conf             7898998479986999980789997389857880314586110556432056677-760179996157676531000-02
Q gi|254780364|r   15 ESVISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRD-DKLEFCSIKVDKGFFTTYLQN-IQ   92 (224)
Q Consensus        15 ~~V~~~~~~T~~~~~l~l~~p~~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~-~~~~~~i~~~~~g~~s~~l~~-~~   92 (224)
T Consensus         1 ckV~~i~~~t~dv~~l~l~~~~~~~f~pGQ~v~v~~~~~~---~R~ySi~s~p~~~~~l~l~ik~~~~G~~s~~l~~~l~   77 (224)
T cd06189           1 CKVESIEPLNDDVYRVRLKPPAPLDFLAGQYLDLLLDDGD---KRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELK   77 (224)
T ss_pred             CEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEECCCC---EEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHCCC
T ss_conf             9888989848996999996699888789974899959987---8998616589999839999999679815889985499


Q ss_pred             CCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf             22221001688753356446768817999658680889999998653088633899994058645430488899887533
Q gi|254780364|r   93 PGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDE  172 (224)
Q Consensus        93 ~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~  172 (224)
T Consensus        78 ~Gd~v~v-~gP~G~f~l~~~-~~~~~vlIAgG~GItP~~s~l~~~~~~~~~~~v~l~~g~r~~~~~~~~~el~~l~~~~~  155 (224)
T cd06189          78 ENGLVRI-EGPLGDFFLRED-SDRPLILIAGGTGFAPIKSILEHLLAQGSKRPIHLYWGARTEEDLYLDELLEAWAEAHP  155 (224)
T ss_pred             CCCEEEE-ECCCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_conf             9998999-706757411567-89858999368775539999999997599998167742699799868999999997689


Q ss_pred             HHCCCCCCCEEEEEEECCCCCCC---CCCCHHHHH
Q ss_conf             21012468759998105788776---672168785
Q gi|254780364|r  173 ILKDLIGQKLKFYRTVTQEDYLY---KGRITNHIL  204 (224)
Q Consensus       173 ~~~~~~~~~~~~~~~isre~~~~---~GrIt~~i~  204 (224)
T Consensus       156 --------~~~~~~~~s~~~~~~~~~~G~v~~~~~  182 (224)
T cd06189         156 --------NFTYVPVLSEPEEGWQGRTGLVHEAVL  182 (224)
T ss_pred             --------CEEEEEEECCCCCCCCCCCCCHHHHHH
T ss_conf             --------959999975688775665580899999