HHsearch alignment for GI: 254780364 and conserved domain: cd06210
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=100.00 E-value=2.4e-39 Score=260.57 Aligned_cols=179 Identities=22% Similarity=0.296 Sum_probs=153.2
Q ss_pred EEEEEEEEEECCCCEEEEEEECCC------CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECCCCCC
Q ss_conf 117898998479986999980789------9973898578803145861105564320566777-601799961576765
Q gi|254780364|r 13 YCESVISVKHYTDRLFRFCITRPK------SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDKGFFT 85 (224)
Q Consensus 13 ~~~~V~~~~~~T~~~~~l~l~~p~------~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~g~~s 85 (224)
T Consensus 2 rea~V~~~~~~t~di~~~~l~~~~~~~~~~~~~f~pGQ~v~l~~~g~--~~~R~ySi~s~p~~~~~l~~~vk~~~~G~~S 79 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT--DTRRSYSLANTPNWDGRLEFLIRLLPGGAFS 79 (236)
T ss_pred EEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCC--CEEEEEEEEECCCCCCEEEEEEEEECCCCHH
T ss_conf 27999998972898699999968977767868898996089998998--8089887602799999899999998499467
Q ss_pred CCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 31000-02222210016887533564467688179996586808899999986530886338999940586454304888
Q gi|254780364|r 86 TYLQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDV 164 (224)
Q Consensus 86 ~~l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~~~el 164 (224)
T Consensus 80 ~~l~~~l~~Gd~v~v-~gP~G~f~l~~~-~~~~~~liAgG~GItP~~s~l~~l~~~~~~~~~~l~~g~r~~~d~~~~~el 157 (236)
T cd06210 80 TYLETRAKVGQRLNL-RGPLGAFGLREN-GLRPRWFVAGGTGLAPLLSMLRRMAEWGEPQEARLFFGVNTEAELFYLDEL 157 (236)
T ss_pred HHHHHCCCCCCEEEE-EECCCCCCCCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 799855999999999-706457501656-888689994686520799999999972999728999742877778999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC---CCCHHHH
Q ss_conf 99887533210124687599981057887766---7216878
Q gi|254780364|r 165 MHEISQDEILKDLIGQKLKFYRTVTQEDYLYK---GRITNHI 203 (224)
Q Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~~isre~~~~~---GrIt~~i 203 (224)
T Consensus 158 ~~l~~~~~--------~~~~~~~~~~~~~~~~g~~g~~~~~l 191 (236)
T cd06210 158 KRLADSLP--------NLTVRICVWRPGGEWEGYRGTVVDAL 191 (236)
T ss_pred HHHHHHCC--------CCEEEEEEECCCCCCCCCCCCHHHHH
T ss_conf 99998789--------93999999547997576647589999