HHsearch results for GI: 254780364 and protein with PDBid: 1tvc_A
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=100.00 E-value=1.1e-36 Score=243.03 Aligned_cols=183 Identities=21% Similarity=0.304 Sum_probs=154.4
Q ss_pred CCCCEEEEEEEEEECCCCEEEEEEECCC------CCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCC-CCEEEEEEECC
Q ss_conf 7342117898998479986999980789------9973898578803145861105564320566777-60179996157
Q gi|254780364|r 9 AADVYCESVISVKHYTDRLFRFCITRPK------SFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDD-KLEFCSIKVDK 81 (224)
Q Consensus 9 p~~~~~~~V~~~~~~T~~~~~l~l~~p~------~~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~-~~~~~i~~~~~ 81 (224)
..+.|+++|++++.+|+++++|+|+.|+ +++|+||||+.|.+++ +.++|+|||+|.|.++ .++++|+++++
T Consensus 7 ~~~~~~a~V~~~~~~~~~v~~~~l~~~~~~~~~~~~~f~pGQ~v~l~~~g--~~~~R~YSias~p~~~~~i~l~Ik~~~~ 84 (250)
T 1tvc_A 7 EVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGVKFEPGQFMDLTIPG--TDVSRSYSPANLPNPEGRLEFLIRVLPE 84 (250)
T ss_dssp CSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCCSCCSCCEEEECTTS--CSSSEEECCBCCSSSSCCEEEEECCCTT
T ss_pred CEEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEEECC--CCCEEEEEECCCCCCCCEEEEEEEECCC
T ss_conf 30058999999996189959999993770025777879999159999899--5703776746888999889999997799
Q ss_pred CCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHH
Q ss_conf 676531000-0222221001688753356446768817999658680889999998653088633899994058645430
Q gi|254780364|r 82 GFFTTYLQN-IQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQY 160 (224)
Q Consensus 82 g~~s~~l~~-~~~gd~~~~~~~p~g~f~~~~~~~~~~lvlIAgGtGiaP~~silr~~~~~~~~~~i~l~~g~R~~~dl~~ 160 (224)
|.+|++|++ +++|+.+.+ .+|.|.|.+.+. ..++++||||||||||++||+++++..+..++++|+|++|+.+|++|
T Consensus 85 G~~S~~l~~~l~~G~~v~i-~gP~G~~~~~~~-~~~~ivliagG~GiaP~~s~l~~l~~~~~~~~v~l~~~~r~~~~~~~ 162 (250)
T 1tvc_A 85 GRFSDYLRNDARVGQVLSV-KGPLGVFGLKER-GMAPRYFVAGGTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFY 162 (250)
T ss_dssp SSSHHHHHHHSSSSSEEEE-EEEECCCSCCCC-SSSCEEEEEESSTTHHHHHHHHHHHHHTCCSCEEEEEECSSSTTCCC
T ss_pred CCCCHHHHHCCCCCCEEEE-ECCCCCCCCCCC-CCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHH
T ss_conf 9732126546789988999-537887524788-87878999778771667799999986177652043012477556678
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC---CCCCHHHH
Q ss_conf 48889988753321012468759998105788776---67216878
Q gi|254780364|r 161 GIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLY---KGRITNHI 203 (224)
Q Consensus 161 ~~el~~l~~~~~~~~~~~~~~~~~~~~isre~~~~---~GrIt~~i 203 (224)
.+||.+|+++++ ||++..+++++...| .|++++.+
T Consensus 163 ~~el~~l~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~ 200 (250)
T 1tvc_A 163 IDELKSLERSMR--------NLTVKACVWHPSGDWEGEQGSPIDAL 200 (250)
T ss_dssp HHHHHHHHHHSS--------SCEEEECCSSCSSCCSSSSSSSSHHH
T ss_pred HHHHHHHHHHCC--------CEEEEEEEECCCCCCCCCCCCHHHHH
T ss_conf 999999998689--------70899999706987465357379999