HHsearch results for GI: 254780364 and protein with PDBid: 2cnd_A
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=100.00 E-value=1.8e-33 Score=223.29 Aligned_cols=187 Identities=16% Similarity=0.211 Sum_probs=147.0
Q ss_pred CCCCEEEEEEEEEECCCCEEEEEEECCCC---CCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCC-EEEEEE------
Q ss_conf 73421178989984799869999807899---97389857880314586110556432056677760-179996------
Q gi|254780364|r 9 AADVYCESVISVKHYTDRLFRFCITRPKS---FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKL-EFCSIK------ 78 (224)
Q Consensus 9 p~~~~~~~V~~~~~~T~~~~~l~l~~p~~---~~f~aGQ~~~l~~~~~g~~~~R~ySiaS~p~~~~~-~~~i~~------ 78 (224)
|.+.+++||++++.+|+|+..|+|..|++ +.|+||||+.|.++..|+...|+|||+|.|.++.. .+.++.
T Consensus 9 p~~~~~~~lv~~~~vs~dv~~~~f~lp~~~~~~~~~~GQ~v~l~~~~~g~~~~R~ys~~s~~~~~~~~~~~v~~~~~~~~ 88 (270)
T 2cnd_A 9 PRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEH 88 (270)
T ss_dssp --CCEEEEEEEEEEEETTEEEEEEECSSTTCCCCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCCSSCB
T ss_pred CCEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCCC
T ss_conf 98048889999998169949999982898655798998179999421992776045026888889808999998615765
Q ss_pred --ECCCCCCCC-CCCCCCCCCCEECCCCCCCCCCCC---------CCCCCCEEEEECCCCHHHHHHHHHHHHHCC--CCC
Q ss_conf --157676531-000022222100168875335644---------676881799965868088999999865308--863
Q gi|254780364|r 79 --VDKGFFTTY-LQNIQPGDTILLHKKSTGDLILDS---------LIPGNRLYLFSMGTGIAPFASMIRDPETYK--KFD 144 (224)
Q Consensus 79 --~~~g~~s~~-l~~~~~gd~~~~~~~p~g~f~~~~---------~~~~~~lvlIAgGtGiaP~~silr~~~~~~--~~~ 144 (224)
.+.|+.+++ ++++++||.+.+ .+|.|.|.+.. ....++++|||||||||||+||+++++..+ ...
T Consensus 89 ~~~~~gg~~s~~l~~l~~Gd~v~v-~gP~G~f~~~~~~~~~~~~~~~~~~~ivliagGtGItP~ls~l~~ll~~~~~~~~ 167 (270)
T 2cnd_A 89 PKFPNGGLMTQYLDSLPVGSYIDV-KGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHT 167 (270)
T ss_dssp TTBTTCCHHHHHHHHCCTTCEEEE-EEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCCC
T ss_pred CCCCCCCHHHHHHHHCCCCCEEEE-ECCCCCEEECCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 446786247999973889998999-7562450444657522224556775489998264561899999999974767786
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC---CCC---CCCCHHHH
Q ss_conf 389999405864543048889988753321012468759998105788---776---67216878
Q gi|254780364|r 145 EVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED---YLY---KGRITNHI 203 (224)
Q Consensus 145 ~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~---~~~---~GrIt~~i 203 (224)
+++|+||+|+.+|++|.+|+++|+++++ ++++++.+++++. ..| +|||++.+
T Consensus 168 ~i~l~~~~r~~~d~~~~~el~~l~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~g~v~~~~ 225 (270)
T 2cnd_A 168 EMHLVYANRTEDDILLRDELDRWAAEYP-------DRLKVWYVIDQVKRPEEGWKYSVGFVTEAV 225 (270)
T ss_dssp EEEEEEEESCGGGCTTHHHHHHHHHHCT-------TTEEEEEEESCCSCGGGCCCSEESSCCHHH
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCCCCCCCCCCCCHHH
T ss_conf 3999983288588302899999998689-------968999825666776557677558525999