HHsearch results for GI: 254780364 and protein with PDBid: 2r6h_A
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, F subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis W83}
Probab=100.00 E-value=2.2e-31 Score=210.40 Aligned_cols=188 Identities=20% Similarity=0.319 Sum_probs=149.0
Q ss_pred CHHCCCCCEEEEEEEEEECCCCEEEEEEECCC--CCCCCCCCEEEECCCC-----------------------------C
Q ss_conf 32207342117898998479986999980789--9973898578803145-----------------------------8
Q gi|254780364|r 5 SSELAADVYCESVISVKHYTDRLFRFCITRPK--SFRFRSGEFVMLGLIV-----------------------------N 53 (224)
Q Consensus 5 ~~~ip~~~~~~~V~~~~~~T~~~~~l~l~~p~--~~~f~aGQ~~~l~~~~-----------------------------~ 53 (224)
++....|.|++||++++++|+++++|+|+.|+ .++|+||||++|.+|. .
T Consensus 2 ~~~~~~~~~~~~v~s~~~~s~~i~~f~~~lp~~~~~~f~pGQyv~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (290)
T 2r6h_A 2 NAVFGVKEWECEVLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKN 81 (290)
T ss_dssp ----CCCEEEEEEEEEEESSSSEEEEEEECSTTCCCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEE
T ss_pred CCCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 75467347899999715157980999998699983784898079999678765434433432334543335521212457
Q ss_pred CCCEEEEEEECCCCCCCCCEEEEEEE----------------CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 61105564320566777601799961----------------57676531000022222100168875335644676881
Q gi|254780364|r 54 GRPIFRAYSIASPCRDDKLEFCSIKV----------------DKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNR 117 (224)
Q Consensus 54 g~~~~R~ySiaS~p~~~~~~~~i~~~----------------~~g~~s~~l~~~~~gd~~~~~~~p~g~f~~~~~~~~~~ 117 (224)
+....|+||++|.|.++....+.++. ++|.+|.+++....++.+.+ .+|.|.+.+.. +.++
T Consensus 82 ~~~~~~~~s~~~~p~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~G~~s~~~~~~~~~~~~~~-~gp~G~~~~~~--~~~~ 158 (290)
T 2r6h_A 82 EEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMM-SGPYGDFHIQD--TDAE 158 (290)
T ss_dssp CSCEEEEEECCSCTTCCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEE-EEEECCCCCCS--SSCE
T ss_pred CCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHCCCCCEEEE-ECCCCCCCCCC--CCCC
T ss_conf 88636774367388999859999999427775433322213799606365760799988999-74778754476--6674
Q ss_pred EEEEECCCCHHHHHHHHHHHHHC-CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC----
Q ss_conf 79996586808899999986530-8863389999405864543048889988753321012468759998105788----
Q gi|254780364|r 118 LYLFSMGTGIAPFASMIRDPETY-KKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED---- 192 (224)
Q Consensus 118 lvlIAgGtGiaP~~silr~~~~~-~~~~~i~l~~g~R~~~dl~~~~el~~l~~~~~~~~~~~~~~~~~~~~isre~---- 192 (224)
+++||||+||||+++|++++... +..++++|+||+|+.+|++|+++|.+|+++++ ++.+..+++++.
T Consensus 159 ~v~iagG~Giap~~~~l~~~~~~~~~~~~i~l~~~~r~~~dl~~~~~l~~l~~~~~--------~~~~~~~~~~~~~~~~ 230 (290)
T 2r6h_A 159 MLYIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFYEEDFREIEREFP--------NFKFHIALSDPQPEDN 230 (290)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCSHHHHHHHHHHCT--------TEEEEEEESSCCGGGC
T ss_pred EEEEECCEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC--------CCEEEEEEECCCCCCC
T ss_conf 47896448168999999999970588862999935799899773999999997689--------9659999925787667
Q ss_pred -CCCCCCCHHHH
Q ss_conf -77667216878
Q gi|254780364|r 193 -YLYKGRITNHI 203 (224)
Q Consensus 193 -~~~~GrIt~~i 203 (224)
..+.|||++.+
T Consensus 231 ~~~~~g~v~~~~ 242 (290)
T 2r6h_A 231 WTGYVGFIHQVI 242 (290)
T ss_dssp CCSCBSCHHHHH
T ss_pred CCCCCCCCCHHH
T ss_conf 667406416799