RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase
protein [Candidatus Liberibacter asiaticus str. psy62]
(224 letters)
>gnl|CDD|182844 PRK10926, PRK10926, ferredoxin-NADP reductase; Provisional.
Length = 248
Score = 99.4 bits (248), Expect = 7e-22
Identities = 58/207 (28%), Positives = 106/207 (51%), Gaps = 11/207 (5%)
Query: 17 VISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCS 76
V V+++TD LF + P F +G+F LGL ++G + RAYS + + LEF
Sbjct: 9 VTKVQNWTDALFSLTVHAPVD-PFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYL 67
Query: 77 IKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136
+ V +G + L ++PGD + + ++ G +LD + L++ + GT I P+ S++++
Sbjct: 68 VTVPEGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQE 127
Query: 137 PETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYL-- 194
+ ++F +++ H A+L Y + +M E+ Q KL+ V++E
Sbjct: 128 GKDLERFKNLVLVHAARYAADLSY-LPLMQELEQR------YEGKLRIQTVVSRETAPGS 180
Query: 195 YKGRITNHILSGEFYRNMGLSPLNPDT 221
GR+ I SGE +GL P++ +T
Sbjct: 181 LTGRVPALIESGELEAAVGL-PMDAET 206
>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK
subunit. Phenylacetate-CoA oxygenase is comprised of a
five gene complex responsible for the hydroxylation of
phenylacetate-CoA (PA-CoA) as the second catabolic step
in phenylacetic acid (PA) degradation. Although the
exact function of this enzyme has not been determined,
it has been shown to be required for phenylacetic acid
degradation and has been proposed to function in a
multicomponent oxygenase acting on phenylacetate-CoA.
Length = 352
Score = 50.2 bits (120), Expect = 4e-07
Identities = 43/173 (24%), Positives = 68/173 (39%), Gaps = 25/173 (14%)
Query: 38 FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKLEFCSIKVDKGFFTTYL-QNIQPGDT 96
+RF G+ + L V+G + R+YSI S ++ K+ G F+T+ I+PGDT
Sbjct: 31 YRFAPGQHLTLRREVDGEELRRSYSICSAPAPGEIRVAVKKIPGGLFSTWANDEIRPGDT 90
Query: 97 ILLHKKSTGDLILDSLIP-GNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRV 155
+ + G D P + G+GI P S+ V+
Sbjct: 91 LEV-MAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAE---------TVLAAEPRSTF 140
Query: 156 AELQYG----IDVMHEISQDEI--LKDLIGQKLKFYRTVTQEDY---LYKGRI 199
L YG VM +E+ LKD Q+ +++E L GR+
Sbjct: 141 -TLVYGNRRTASVMF---AEELADLKDKHPQRFHLAHVLSREPREAPLLSGRL 189
>gnl|CDD|181398 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma;
Provisional.
Length = 289
Score = 48.6 bits (116), Expect = 1e-06
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 25/185 (13%)
Query: 17 VISVKHYTDR--LFRFCITRP---KSFRFRSGEFVMLGLIVNGR-PIFRAYSI-ASPCRD 69
++ V T+R LF P +SF F+ G+FV + + G PI SI +SP R
Sbjct: 10 ILEVYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPGVGEVPI----SICSSPTRK 65
Query: 70 DKLEFCSIKVDKGFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAP 129
E C + G TT + ++ GD + + +D + G L L + G G+AP
Sbjct: 66 GFFELCIRRA--GRVTTVIHRLKEGDIVGVRGPYGNGFPVDEM-EGMDLLLIAGGLGMAP 122
Query: 130 FASMIRDP-ETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLI-GQKLKFYRT 187
S++ + K+ + + + +Y D++ DE++KDL + +K ++
Sbjct: 123 LRSVLLYAMDNRWKYGNITLIYGA------KYYEDLLF---YDELIKDLAEAENVKIIQS 173
Query: 188 VTQED 192
VT++
Sbjct: 174 VTRDP 178
>gnl|CDD|168200 PRK05713, PRK05713, hypothetical protein; Provisional.
Length = 312
Score = 43.9 bits (104), Expect = 4e-05
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 34 RPKSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKLEF---CSIKVDKGFFTTYLQ 89
RP R+R+G+ ++L + R YS+AS P D LEF CS G F +
Sbjct: 115 RP--LRYRAGQHLVLW---TAGGVARPYSLASLPGEDPFLEFHIDCS---RPGAFCDAAR 166
Query: 90 NIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136
+Q GD + L + G L D L+L + GTG+AP ++R+
Sbjct: 167 QLQVGDLLRLGELRGGALHYDPDWQERPLWLLAAGTGLAPLWGILRE 213
>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase;
Validated.
Length = 339
Score = 37.5 bits (88), Expect = 0.003
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 25/110 (22%)
Query: 36 KSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKLEFCSIKVDKGFFTTYLQNIQPG 94
+ ++ +G+++ ++ +G+ R+YSIA+ P LE + G FT ++
Sbjct: 128 ERLQYLAGQYIEF-ILKDGKR--RSYSIANAPHSGGPLELHIRHMPGGVFTDHVFGALKE 184
Query: 95 DTIL----------LHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMI 134
IL L + S ++L + GTG AP S++
Sbjct: 185 RDILRIEGPLGTFFLREDSDKPIVL---LAS--------GTGFAPIKSIV 223
>gnl|CDD|177894 PLN02252, PLN02252, nitrate reductase [NADPH].
Length = 888
Score = 35.8 bits (83), Expect = 0.008
Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 29/139 (20%)
Query: 26 RLFRFCITRPKS-FRFRSGEFVMLGLIVNGRPIFRAYSIASPCRDDKL---EFCSIKV-- 79
RLFRF + G+ V L +NG+ RAY+ S DD++ E IKV
Sbjct: 650 RLFRFALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTPTSS--DDEVGHFELV-IKVYF 706
Query: 80 --------DKGFFTTYLQNIQPGDTI-----LLHKKSTGD---LILDSLIPGNRLYLFSM 123
+ G + YL ++ GDTI L H + G L+ +L + +
Sbjct: 707 KNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAG 766
Query: 124 GTGIAPFASMI----RDPE 138
GTGI P +I RDPE
Sbjct: 767 GTGITPMYQVIQAILRDPE 785
>gnl|CDD|178662 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional.
Length = 367
Score = 35.4 bits (81), Expect = 0.014
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 25/116 (21%)
Query: 40 FRSGEFVML---GLIVNGRP-IFRAYSIASPCRDD-----KLEFCSIK---------VDK 81
+R G+ + + G+ NG+P R YSIAS D + C + + K
Sbjct: 123 YREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVK 182
Query: 82 GFFTTYLQNIQPGDTILLHKKSTGDLILDSLIPGN---RLYLFSMGTGIAPFASMI 134
G + +L +++PG + K TG + + L+P + + + + GTGIAPF S +
Sbjct: 183 GVCSNFLCDLKPGAEV----KITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFL 234
>gnl|CDD|178828 PRK00054, PRK00054, dihydroorotate dehydrogenase electron
transfer subunit; Reviewed.
Length = 250
Score = 33.3 bits (77), Expect = 0.053
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 17 VISVKHYTDRLFRFCITRPKSFRFRSGEFVML----GLIVNGRPIFRAYSIASPCRDDKL 72
++ K ++ + K F + G+FVM+ + RPI SI+ DK
Sbjct: 9 IVENKEIAPNIYTLVLDGEKVFDMKPGQFVMVWVPGVEPLLERPI----SISDI---DKN 61
Query: 73 EFCSIKVDK-GFFTTYLQNIQPGDTI 97
E +I K G T L ++ GD +
Sbjct: 62 E-ITILYRKVGEGTKKLSKLKEGDEL 86
>gnl|CDD|182647 PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent;
Provisional.
Length = 332
Score = 32.8 bits (75), Expect = 0.068
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 38 FRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKLEFCSIKV---DKGFFTTYL-QNIQ 92
+ +R+G++ ++ I N RAY+++S P EF ++ V D G + +L ++++
Sbjct: 35 YPYRAGQYALVS-IRNSAETLRAYTLSSTPGVS---EFITLTVRRIDDGVGSQWLTRDVK 90
Query: 93 PGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIR 135
GD + L + G+ D ++ L + G G+ P SM R
Sbjct: 91 RGDYLWL-SDAMGEFTCDD-KAEDKYLLLAAGCGVTPIMSMRR 131
>gnl|CDD|178663 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional.
Length = 307
Score = 31.6 bits (72), Expect = 0.17
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 18/95 (18%)
Query: 59 RAYSIASPCRDDKLE-----FC---SIKVD----------KGFFTTYLQNIQPGDTILLH 100
R YSIAS D + C ++ D KG + +L + +PGD + +
Sbjct: 82 RLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQIT 141
Query: 101 KKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIR 135
S ++L P + + GTGIAPF +R
Sbjct: 142 GPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLR 176
>gnl|CDD|181209 PRK08051, fre, FMN reductase; Validated.
Length = 232
Score = 30.6 bits (70), Expect = 0.30
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 17 VISVKHYTDRLFRFCITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIAS-PCRDDKLE 73
V SV+ TD ++R + F FR+G+++M +V G R +SIAS P +E
Sbjct: 7 VTSVEAITDTVYRVRLVPEAPFSFRAGQYLM---VVMGEKDKRPFSIASTPREKGFIE 61
>gnl|CDD|177944 PLN02309, PLN02309, 5'-adenylylsulfate reductase.
Length = 457
Score = 30.9 bits (70), Expect = 0.30
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 21/88 (23%)
Query: 107 LILDSLIPGNRLYLFSMGTGIAPFASMIR-DPETYKKFDEVIITHTCGRVAELQYGIDVM 165
LI + + G +FS+ TG R +PETY+ FD V E YGI +
Sbjct: 125 LIEYAHLTGRPFRVFSLDTG--------RLNPETYRLFDAV----------EKHYGIRIE 166
Query: 166 HEISQDEILKDLIGQK--LKFYRTVTQE 191
+ ++ L+ K FY QE
Sbjct: 167 YMFPDAVEVQALVRNKGLFSFYEDGHQE 194
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 30.5 bits (69), Expect = 0.33
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 80 DKGFFTTYLQNIQPGDTILLHKKSTGDLILD----------SLIPGNRLYLFSMGTGIAP 129
DKG ++ ++PGD++ + K+ G L ++ +L L + GTG+AP
Sbjct: 988 DKGTLKEWISALRPGDSVEM--KACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAP 1045
Query: 130 FASMIR 135
+IR
Sbjct: 1046 MLQIIR 1051
>gnl|CDD|179717 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed.
Length = 195
Score = 30.3 bits (69), Expect = 0.39
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 18/67 (26%)
Query: 134 IRDP--ETYKKFDEVIITHTCGRVAELQYGIDVMHEISQDEILKDLI----------GQK 181
+RDP + Y V++ HT GR A+ Q+G + I++ LI G+K
Sbjct: 24 VRDPSLKRYINLTPVLVPHTGGRHAKKQFGKAEVP------IVERLINKLMRTERNTGKK 77
Query: 182 LKFYRTV 188
K Y V
Sbjct: 78 QKAYNIV 84
>gnl|CDD|180474 PRK06214, PRK06214, sulfite reductase; Provisional.
Length = 530
Score = 28.5 bits (64), Expect = 1.3
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
Query: 59 RAYSIASPCRDDKLEFCSIKVD-----------KGFFTTYL-QNIQPGDTI--LLHKKST 104
R YSI+S + S+ VD G +T+L + + PG + + K
Sbjct: 317 RLYSISSSPKATPGRV-SLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKAHG 375
Query: 105 GDLILDSLIPGNRLYLFSMGTGIAPFASMIRD 136
L D P + + GTGIAPF + + +
Sbjct: 376 FALPAD---PNTPIIMVGPGTGIAPFRAFLHE 404
>gnl|CDD|107163 PHA02275, PHA02275, hypothetical protein.
Length = 125
Score = 28.5 bits (63), Expect = 1.5
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 144 DEVIITHTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDYLYKGRITNH 202
+ +I + C V L+ G+ M +I D +K + R V ++Y + ++H
Sbjct: 63 SDGVIENICN-VEGLEDGLSKMKKIFDDSNF-----EKHYYNRVVDHDEYYWIDYGSHH 115
>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1307
Score = 28.2 bits (63), Expect = 1.7
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 127 IAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMHE--ISQDEILKDL----IGQ 180
I FA+M+ D T + + + + G V E Y + VM E + +EI K++ Q
Sbjct: 122 INAFAAMVHDRMTECVYPQPLTSFESGVVPEPVYTVPVMEEGRAALEEINKEMGLAFDEQ 181
Query: 181 KLKFYRTVTQED 192
L +Y + ++D
Sbjct: 182 DLDYYTRLFRDD 193
>gnl|CDD|162841 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase. This
enzyme, formally named (1->4)-alpha-D-glucan
1-alpha-D-glucosylmutase, is the TreY enzyme of the
TreYZ pathway of trehalose biosynthesis, an alternative
to the OtsAB pathway. Trehalose may be incorporated into
more complex compounds but is best known as compatible
solute. It is one of the most effective osmoprotectants,
and unlike the various betaines does not require
nitrogen for its synthesis.
Length = 825
Score = 28.1 bits (63), Expect = 2.0
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 161 GIDVMHEISQDEILKDLIGQK--LKFYRTVTQ-----EDYLY--KGRITNHILSGEFYRN 211
G D ++E+ + +L D G++ YR T E+ L K + H+L+ E R
Sbjct: 302 GYDFLNEV--NGVLVDAAGEEPLTALYRNFTGRPQDIEETLRRAKRLVLRHLLASEIRRL 359
Query: 212 MGLSPLNPDTR 222
L +
Sbjct: 360 ARLLARLAELD 370
>gnl|CDD|177929 PLN02292, PLN02292, ferric-chelate reductase.
Length = 702
Score = 27.5 bits (61), Expect = 2.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 118 LYLFSMGTGIAPFASMIRD 136
L + S G+GI PF S+IRD
Sbjct: 434 LVMVSGGSGITPFISIIRD 452
>gnl|CDD|149229 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain.
Length = 148
Score = 27.3 bits (61), Expect = 3.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 118 LYLFSMGTGIAPFASMIRD 136
L L + G+GI PF S++RD
Sbjct: 4 LLLVAGGSGITPFISILRD 22
>gnl|CDD|147887 pfam05974, DUF892, Domain of unknown function (DUF892). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 159
Score = 27.1 bits (61), Expect = 3.4
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 16/53 (30%)
Query: 149 THTC----GRVAELQYGIDVMHEISQDEILKD--LIGQKLKF-------YRTV 188
C G VAE Q +++ E + DE++KD LI Y T+
Sbjct: 67 GKKCDAMEGLVAEGQ---ELLEEDAGDEVVKDAALIAAAQAVEHYEIAAYGTL 116
>gnl|CDD|161873 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase,
thioredoxin-independent. This enzyme, involved in the
assimilation of inorganic sulfate, is closely related to
the thioredoxin-dependent PAPS reductase of Bacteria
(CysH) and Saccharomyces cerevisiae. However, it has its
own C-terminal thioredoxin-like domain and is not
thioredoxin-dependent. Also, it has a substrate
preference for 5'-adenylylsulfate (APS) over
3'-phosphoadenylylsulfate (PAPS) so the pathway does not
require an APS kinase (CysC) to convert APS to PAPS.
Arabidopsis thaliana appears to have three isozymes, all
able to complement E. coli CysH mutants (even in
backgrounds lacking thioredoxin or APS kinase) but
likely localized to different compartments in
Arabidopsis.
Length = 463
Score = 27.3 bits (60), Expect = 3.5
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 19/87 (21%)
Query: 107 LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIITHTCGRVAELQYGIDVMH 166
LI + + G +FS+ TG +PETY+ FD V E QYGI + +
Sbjct: 130 LIEYAHLTGRPFRVFSLDTGRL-------NPETYRFFDAV----------EKQYGIRIEY 172
Query: 167 EISQDEILKDLIGQK--LKFYRTVTQE 191
++ L+ K FY QE
Sbjct: 173 MFPDAVEVQALVRSKGLFSFYEDGHQE 199
>gnl|CDD|149225 pfam08021, FAD_binding_9, Siderophore-interacting FAD-binding
domain.
Length = 116
Score = 26.9 bits (60), Expect = 4.1
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 33/113 (29%)
Query: 16 SVISVKHYTDRLFRFCITRPKSFRFRSGEF----------------VMLGLIVNG----- 54
+V+ V + + R T P F S V L +G
Sbjct: 1 TVVRVTRLSPHMRRITFTGPGLAGFPSDGPDDHIKLFFPPPGQTPPVPPTLGEDGIWLPG 60
Query: 55 --RPIFRAYSIASPCRDDKLEFCSIKVD------KGFFTTYLQNIQPGDTILL 99
RPI R Y++ S + +D +G + + QPGDT+ +
Sbjct: 61 EQRPIMRTYTVRSFDPAA----GELDIDFVLHGDEGPASRWAARAQPGDTLGI 109
>gnl|CDD|130530 TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA family. This
subfamily is closely related to, yet is distinct from,
uroporphyrinogen decarboxylase (EC 4.1.1.37). It
includes two isozymes from Methanosarcina barkeri of
methylcobalamin--coenzyme M methyltransferase. It also
includes a chloromethane utilization protein, CmuA,
which transfers the methyl group of chloromethane to a
corrinoid protein.
Length = 340
Score = 26.7 bits (59), Expect = 4.9
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 16/48 (33%)
Query: 127 IAPFASM-IRDPETYKKF---------------DEVIITHTCGRVAEL 158
PFAS + PETYK+F + + H CG +
Sbjct: 200 ADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFTQPI 247
>gnl|CDD|182299 PRK10199, PRK10199, alkaline phosphatase isozyme conversion
aminopeptidase; Provisional.
Length = 346
Score = 26.6 bits (59), Expect = 5.3
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 87 YLQNIQPGDTILLHKKSTGDLI-LDSLIPGNRLYLFSMGTGIAPFASMIRD 136
L+ + + KK+T +I LD+LI G++LY S + RD
Sbjct: 185 LLKRMSDTE-----KKNTLLVINLDNLIVGDKLYFNSGVNTPEAVRKLTRD 230
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional.
Length = 446
Score = 26.5 bits (58), Expect = 5.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 107 LILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFD 144
+IL S +PG ++LFS+ +A S + + Y +F+
Sbjct: 95 MILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFE 132
>gnl|CDD|162552 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase,
eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA
synthase is the first step of isopentenyl pyrophosphate
(IPP) biosynthesis via the mevalonate pathway. This
pathway is found mainly in eukaryotes, but also in
archaea and some bacteria. This model is specific for
eukaryotes.
Length = 454
Score = 26.3 bits (58), Expect = 5.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
Query: 98 LLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASM 133
LL KS +L G R+ +FS G+G+A ASM
Sbjct: 341 LLSSKSAQEL------AGKRVGMFSYGSGLA--ASM 368
>gnl|CDD|177590 PHA03349, PHA03349, tegument protein UL16; Provisional.
Length = 343
Score = 26.2 bits (58), Expect = 6.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 32 ITRPKSFRFRSGEFVMLGLIVNGRPIFRAYSIAS 65
+TRPK+ R F +L L NG RAY + +
Sbjct: 67 LTRPKALRLPPKTFHVLFL-FNGE---RAYCLTA 96
>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase.
Length = 699
Score = 26.2 bits (57), Expect = 6.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 116 NRLYLFSMGTGIAPFASMIRD 136
N L L S G+GI PF S+IR+
Sbjct: 413 NSLILVSGGSGITPFISVIRE 433
>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase.
Length = 459
Score = 26.2 bits (58), Expect = 6.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 9/36 (25%)
Query: 98 LLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASM 133
L+H K S + G R+ +FS G+G+ A+M
Sbjct: 339 LVHNKH-------SELAGKRILMFSYGSGLT--ATM 365
>gnl|CDD|178965 PRK00293, dipZ, thiol:disulfide interchange protein precursor;
Provisional.
Length = 571
Score = 25.9 bits (58), Expect = 7.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 97 ILLHKKSTGDLILDSLIPGNRLYLFSMGTGI 127
LL+ +GDL L+ G LYL ++G G+
Sbjct: 314 ALLYIAQSGDL----LLGGLTLYLLALGMGL 340
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.325 0.143 0.428
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,733,380
Number of extensions: 236732
Number of successful extensions: 543
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 39
Length of query: 224
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,049,753
Effective search space: 542666902
Effective search space used: 542666902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)