RPSBLAST alignment of GI: 254780364 and protein with PDBid: 2r6h

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, F subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis W83} Length = 290

 Score = 46.5 bits (109), Expect = 4e-06
 Identities = 36/238 (15%), Positives = 76/238 (31%), Gaps = 58/238 (24%)

Query: 17  VISVKHYTD--RLFRFCITRPKSFRFRSGEFVMLGL------------------------ 50
           V+S K+ +   + F   +   ++  F+SG +  + +                        
Sbjct: 14  VLSNKNVSTFIKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMD 73

Query: 51  -----IVNGRPIFRAYSIASPCRDDKLEFCSIK----------------VDKGFFTTYLQ 89
                  N     RAYS+A+   +  +   +++                +  G  ++Y+ 
Sbjct: 74  AWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIF 133

Query: 90  NIQPGDTILLHKKSTGDLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKKFDEVIIT 149
           +++PGD +++        I D+      +     G G+AP  + I       K    +  
Sbjct: 134 SLKPGDKVMMSGPYGDFHIQDT---DAEMLYIGGGAGMAPLRAQILHLFRTLKTGRKVSY 190

Query: 150 HTCGRVAELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQEDY---LYKGRITNHIL 204
               R        ++ +E    EI ++    K     +  Q +     Y G I   I 
Sbjct: 191 WYGARSKN-----EIFYEEDFREIEREFPNFKFHIALSDPQPEDNWTGYVGFIHQVIY 243