HHsearch alignment for GI: 254780365 and conserved domain: COG1083
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane].
Probab=97.72 E-value=0.0003 Score=46.07 Aligned_cols=205 Identities=17% Similarity=0.209 Sum_probs=106.7
Q ss_pred CEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCC
Q ss_conf 58999568888334324408883335688362799999999978998899981355444101001174544456541870
Q gi|254780365|r 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKK 87 (299)
Q Consensus 8 ~KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~ 87 (299)
T Consensus 4 ~iAiIpAR~gSKgI~------~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~-~Il~~-------------A~-- 61 (228)
T COG1083 4 NIAIIPARGGSKGIK------NKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSE-EILEE-------------AK-- 61 (228)
T ss_pred EEEEEECCCCCCCCC------CCCHHHHCCCCHHHHHHHHHHCCCCCCEEEECCCCH-HHHHH-------------HH--
T ss_conf 489976267887687------633577579615899999986588522699847958-99999-------------98--
Q ss_pred EEECCCCCCCCCCCEEEECCCCCCCCCC-----CCCCCCCCCCC-CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0001134411248579984333423346-----65421101122-333-3111278644454433221122212234322
Q gi|254780365|r 88 AELTLLAESIPSIGNAVFTWQYERKGLG-----HAVWCARNIIG-DNP-FALLLPDMIMSPLEGENCMANMIKLYEKEGA 160 (299)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg-----~Ai~~a~~~i~-de~-flv~~gD~i~~~~~~~~~l~~li~~~~~~~~ 160 (299)
T Consensus 62 ----------~ygak~~~~R-p~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~Ts---PLl~~~~ik~A~e~f~~~~~ 127 (228)
T COG1083 62 ----------KYGAKVFLKR-PKELASDRASTIDAALHALESFNIDEDTLILLQPTS---PLLTSLHIKEAFEKFLNNQY 127 (228)
T ss_pred ----------HHCCCCCCCC-CHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC---CCCCHHHHHHHHHHHHCCCC
T ss_conf ----------7276110248-745416721678999999987442457068840685---00014579999999965887
Q ss_pred -CEEEEEECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCC----CCCE-EECHHHEECHHHHHHHCCCCCCCCCC
Q ss_conf -00112432854433133100133333353000000257788867----3423-30202002723311000122666767
Q gi|254780365|r 161 -NILAVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTF----ISNF-FINGRYILHPDIFSILNDWKENEGKG 234 (299)
Q Consensus 161 -~vi~~~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~----~Snl-~~~GiYi~~~~i~~~L~~~~~~~~~g 234 (299)
T Consensus 128 ~sl~sa~e~e~~p~k~f~---~~~------~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~--e~~~------ 190 (228)
T COG1083 128 DSLFSAVECEHHPYKAFS---LNN------GEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALL--ENDC------ 190 (228)
T ss_pred CCEEEEEECCCCHHHHHH---HCC------CCEEECCCCCCCCCCCCCCHHHHHHCCCEEEEHHHHHH--HCCC------
T ss_conf 635887532234688887---507------84410114776554211051656536767975279874--1575------
Q ss_pred CCCHHHHHHHHHHCCCEEEEEEEE-EEEECCCHHHHHHHHHHH
Q ss_conf 500378999998319848999813-786439988999999998
Q gi|254780365|r 235 EIQLTDSMRKLSERHDFLAYHFKG-HTYDCGSKKGFVLANIAF 276 (299)
Q Consensus 235 E~~ltD~i~~l~~~~~v~a~~~~g-~w~DiG~~~~yl~A~~~~ 276 (299)
T Consensus 191 ---------~f~--~~~~~y~m~~~~~~DID~~~Dl~iae~l~ 222 (228)
T COG1083 191 ---------FFI--PNTILYEMPEDESIDIDTELDLEIAENLI 222 (228)
T ss_pred ---------EEC--CCCEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf ---------415--89668981712000566087699999986