HHsearch alignment for GI: 254780365 and conserved domain: COG1209
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=391.11 Aligned_cols=231 Identities=28% Similarity=0.503 Sum_probs=197.7
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCC-CCCCHHHCCCCHHHHHHHHHCCCC
Q ss_conf 8999568888334324408883335688362799999999978998899981355-444101001174544456541870
Q gi|254780365|r 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRG-KGLIKDYFDIQFELEQSLRKRNKK 87 (299)
Q Consensus 9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~-k~~I~~~f~~~~~~~~~l~~~~~~ 87 (299)
T Consensus 2 KgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~l----------------- 64 (286)
T COG1209 2 KGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKEL----------------- 64 (286)
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH-----------------
T ss_conf 727963767544332313677533211686215857999997598569999668850566633-----------------
Q ss_pred EEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEE
Q ss_conf 0001134411248579984333423346654211011223333111278644454433221122212234-322001124
Q gi|254780365|r 88 AELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEK-EGANILAVS 166 (299)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~-~~~~vi~~~ 166 (299)
T Consensus 65 -----lGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~~~~f~l~LGDNi~~~-~----l~~~~~~~~~~~~ga~i~~~ 134 (286)
T COG1209 65 -----LGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQD-G----LSELLEHFAEEGSGATILLY 134 (286)
T ss_pred -----HCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCEECC-C----HHHHHHHHHCCCCCCEEEEE
T ss_conf -----3671003863699965898768999998886458986599926844105-7----79999998524899489999
Q ss_pred ECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 32854433133100133333353000000257788867342330202002723311000122666767500378999998
Q gi|254780365|r 167 ECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLS 246 (299)
Q Consensus 167 ~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~ltD~i~~l~ 246 (299)
T Consensus 135 ~V~--dP~rfGV~e~d~~~-----~v~~l~EKP~~P--~SNlAvtGlY~~d~~Vf~~~~~ikPS~-RGElEITd~i~~~i 204 (286)
T COG1209 135 EVD--DPSRYGVVEFDEDG-----KVIGLEEKPKEP--KSNLAVTGLYFYDPSVFEAIKQIKPSA-RGELEITDAIDLYI 204 (286)
T ss_pred ECC--CCCCCEEEEECCCC-----CEEEEEECCCCC--CCCEEEEEEEEECHHHHHHHHCCCCCC-CCCEEEHHHHHHHH
T ss_conf 848--95304489986899-----687767889999--876268899970858999987189887-78567528899999
Q ss_pred HCC-CEEEEEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 319-848999813786439988999999998
Q gi|254780365|r 247 ERH-DFLAYHFKGHTYDCGSKKGFVLANIAF 276 (299)
Q Consensus 247 ~~~-~v~a~~~~g~w~DiG~~~~yl~A~~~~ 276 (299)
T Consensus 205 ~~G~~~~~~~~~G~WlDtGt~~slleA~~~i 235 (286)
T COG1209 205 EKGYLVVAILIRGWWLDTGTPESLLEANNFV 235 (286)
T ss_pred HCCCEEEEEECCCEEEECCCHHHHHHHHHHH
T ss_conf 7696888987151688638701289999999