HHsearch alignment for GI: 254780365 and conserved domain: COG1212

>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane].
Probab=98.24  E-value=1.6e-05  Score=53.90  Aligned_cols=224  Identities=17%  Similarity=0.132  Sum_probs=119.3

Q ss_pred             CEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCC
Q ss_conf             58999568888334324408883335688362799999999978998899981355444101001174544456541870
Q gi|254780365|r    8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKK   87 (299)
Q Consensus         8 ~KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~   87 (299)
T Consensus         4 ~~viIPAR~~STRLp------gKPLadI~GkpmI~rV~e~a~~s~~~rvvVATDde--~I~~a----------v~-----   60 (247)
T COG1212           4 FVVIIPARLASTRLP------GKPLADIGGKPMIVRVAERALKSGADRVVVATDDE--RIAEA----------VQ-----   60 (247)
T ss_pred             EEEEEECCHHCCCCC------CCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCH--HHHHH----------HH-----
T ss_conf             599985420026689------97357737960789999999873787289974988--99999----------99-----


Q ss_pred             EEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE--E
Q ss_conf             000113441124857998433342334665421101--122333311127864445443322112221223432200--1
Q gi|254780365|r   88 AELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARN--IIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANI--L  163 (299)
Q Consensus        88 ~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~--~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~v--i  163 (299)
T Consensus        61 ----------~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p---~~I~~~~~~L~~~~~~~aTl  127 (247)
T COG1212          61 ----------AFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEP---EVIRAVAENLENSNADMATL  127 (247)
T ss_pred             ----------HHCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCH---HHHHHHHHHHHHCCCCEEEE
T ss_conf             ----------70978996178889800899999996599964299986588777797---99999999987377660455


Q ss_pred             EEEECCHHHCCCCCCEECCCCCCCCCCEEEEECCC--CCCCCC---CCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCH
Q ss_conf             12432854433133100133333353000000257--788867---3423302020027233110001226667675003
Q gi|254780365|r  164 AVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEK--PDSSTF---ISNFFINGRYILHPDIFSILNDWKENEGKGEIQL  238 (299)
Q Consensus       164 ~~~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEK--P~~~~~---~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~l  238 (299)
T Consensus       128 ~~~i~~~ee~~nPN~VKvV~---d~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~----LE~  200 (247)
T COG1212         128 AVKITDEEEAFNPNVVKVVL---DKEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSP----LEK  200 (247)
T ss_pred             EEECCCHHHHCCCCCEEEEE---CCCCCEEEEECCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHCCCCCH----HHH
T ss_conf             34337888845998279997---59982899876878775434677643642205886799999997069960----567


Q ss_pred             HHHHHHHH--HCC-CEEEEEEEEEE-EECCCHHHHHHHHH
Q ss_conf             78999998--319-84899981378-64399889999999
Q gi|254780365|r  239 TDSMRKLS--ERH-DFLAYHFKGHT-YDCGSKKGFVLANI  274 (299)
Q Consensus       239 tD~i~~l~--~~~-~v~a~~~~g~w-~DiG~~~~yl~A~~  274 (299)
T Consensus       201 ~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~  240 (247)
T COG1212         201 IESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRK  240 (247)
T ss_pred             HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf             8778999998769757899841688889898899999999