HHsearch alignment for GI: 254780365 and conserved domain: COG1212
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane].
Probab=98.24 E-value=1.6e-05 Score=53.90 Aligned_cols=224 Identities=17% Similarity=0.132 Sum_probs=119.3
Q ss_pred CEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCC
Q ss_conf 58999568888334324408883335688362799999999978998899981355444101001174544456541870
Q gi|254780365|r 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKK 87 (299)
Q Consensus 8 ~KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~ 87 (299)
T Consensus 4 ~~viIPAR~~STRLp------gKPLadI~GkpmI~rV~e~a~~s~~~rvvVATDde--~I~~a----------v~----- 60 (247)
T COG1212 4 FVVIIPARLASTRLP------GKPLADIGGKPMIVRVAERALKSGADRVVVATDDE--RIAEA----------VQ----- 60 (247)
T ss_pred EEEEEECCHHCCCCC------CCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCH--HHHHH----------HH-----
T ss_conf 599985420026689------97357737960789999999873787289974988--99999----------99-----
Q ss_pred EEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE--E
Q ss_conf 000113441124857998433342334665421101--122333311127864445443322112221223432200--1
Q gi|254780365|r 88 AELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARN--IIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANI--L 163 (299)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~--~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~v--i 163 (299)
T Consensus 61 ----------~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p---~~I~~~~~~L~~~~~~~aTl 127 (247)
T COG1212 61 ----------AFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEP---EVIRAVAENLENSNADMATL 127 (247)
T ss_pred ----------HHCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCH---HHHHHHHHHHHHCCCCEEEE
T ss_conf ----------70978996178889800899999996599964299986588777797---99999999987377660455
Q ss_pred EEEECCHHHCCCCCCEECCCCCCCCCCEEEEECCC--CCCCCC---CCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 12432854433133100133333353000000257--788867---3423302020027233110001226667675003
Q gi|254780365|r 164 AVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEK--PDSSTF---ISNFFINGRYILHPDIFSILNDWKENEGKGEIQL 238 (299)
Q Consensus 164 ~~~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEK--P~~~~~---~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~l 238 (299)
T Consensus 128 ~~~i~~~ee~~nPN~VKvV~---d~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~----LE~ 200 (247)
T COG1212 128 AVKITDEEEAFNPNVVKVVL---DKEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSP----LEK 200 (247)
T ss_pred EEECCCHHHHCCCCCEEEEE---CCCCCEEEEECCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHHCCCCCH----HHH
T ss_conf 34337888845998279997---59982899876878775434677643642205886799999997069960----567
Q ss_pred HHHHHHHH--HCC-CEEEEEEEEEE-EECCCHHHHHHHHH
Q ss_conf 78999998--319-84899981378-64399889999999
Q gi|254780365|r 239 TDSMRKLS--ERH-DFLAYHFKGHT-YDCGSKKGFVLANI 274 (299)
Q Consensus 239 tD~i~~l~--~~~-~v~a~~~~g~w-~DiG~~~~yl~A~~ 274 (299)
T Consensus 201 ~E~LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~ 240 (247)
T COG1212 201 IESLEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRK 240 (247)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 8778999998769757899841688889898899999999