HHsearch alignment for GI: 254780365 and conserved domain: PRK00155
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed.
Probab=99.29 E-value=5.6e-11 Score=87.46 Aligned_cols=209 Identities=20% Similarity=0.252 Sum_probs=107.6
Q ss_pred CCCCCEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf 885458999568888334324408883335688362799999999978-9988999813554441010011745444565
Q gi|254780365|r 4 LKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEA-GLTDFVFVTGRGKGLIKDYFDIQFELEQSLR 82 (299)
Q Consensus 4 m~~i~KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~-Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~ 82 (299)
T Consensus 2 m~~i-~aIIlAaG~G~R~g---~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~IvvV~~~~~~---~~------~~~~~~ 68 (228)
T PRK00155 2 MPMV-YAIIPAAGIGSRMG---ADRPKQYLPLGGKPILEHTLEAFLAHPAIDEIIVVVPPDDT---EY------AKLLLA 68 (228)
T ss_pred CCCE-EEEEECCCCCCCCC---CCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECCHHH---HH------HHHHHH
T ss_conf 8757-99993772051378---67996556689569999999999759998979999576269---99------999987
Q ss_pred HCCCCEEECCCCCCCCCCCEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 41870000113441124857998433342334--6654211011223333111278644454433221122212234322
Q gi|254780365|r 83 KRNKKAELTLLAESIPSIGNAVFTWQYERKGL--GHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGA 160 (299)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~i~~v~Q~~p~Gt--g~Ai~~a~~~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~ 160 (299)
T Consensus 69 ~~~---------------~~i~~v~----GG~tR~~Sv~ngL~~l~~~~~VlIH-Da-ARP~is~~~i~~li~~~~~~~~ 127 (228)
T PRK00155 69 KFD---------------KRIKVVA----GGAERQDSVLNGLQALPDDDWVLVH-DA-ARPFLTPDDIDRLIEAAEEYGA 127 (228)
T ss_pred HCC---------------CCEEEEC----CCHHHHHHHHHHHHHHCCCCEEEEE-CC-CCCCCCHHHHHHHHHHHHHCCC
T ss_conf 449---------------8579976----9703999999999984039979997-06-6768999999999999984698
Q ss_pred CEEEEEECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHH------HHHCCCCCCCCCC
Q ss_conf 0011243285443313310013333335300000025778886734233020200272331------1000122666767
Q gi|254780365|r 161 NILAVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIF------SILNDWKENEGKG 234 (299)
Q Consensus 161 ~vi~~~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~------~~L~~~~~~~~~g 234 (299)
T Consensus 128 ~ip~~-p~~D-Ti-----k~~~~~-----~~i~~tl~---R----~~l~~----~QTPQ~F~~~~l~~a~~~~~----~~ 180 (228)
T PRK00155 128 AILAV-PVRD-TI-----KRVDAG-----GFIVDTPD---R----SGLWA----AQTPQGFRVELLKEALARAL----AE 180 (228)
T ss_pred CEEEE-ECCC-CE-----EEECCC-----CCEEEECC---C----HHEEE----EECCCCCCHHHHHHHHHHHH----HC
T ss_conf 46987-6024-17-----896589-----81553035---1----44366----52885325999999999998----75
Q ss_pred CCCHHHHHHHHHHCC-CEEEEEEEEEEEECCCHHHHHHHH
Q ss_conf 500378999998319-848999813786439988999999
Q gi|254780365|r 235 EIQLTDSMRKLSERH-DFLAYHFKGHTYDCGSKKGFVLAN 273 (299)
Q Consensus 235 E~~ltD~i~~l~~~~-~v~a~~~~g~w~DiG~~~~yl~A~ 273 (299)
T Consensus 181 ~~~~TDd~sl~~~~g~~v~~v~G~~~N~KIT~~eDL~~ae 220 (228)
T PRK00155 181 GFTITDDASAVEWLGKPVRLVEGRYDNIKVTTPEDLALAE 220 (228)
T ss_pred CCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 9987789999998699769996685437728999999999