HHsearch alignment for GI: 254780365 and conserved domain: cd02526
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=96.10 E-value=0.063 Score=31.78 Aligned_cols=190 Identities=12% Similarity=0.071 Sum_probs=83.2
Q ss_pred EHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 27999999999789988999813554441010011745444565418700001134411248579984333423346654
Q gi|254780365|r 39 PVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAV 118 (299)
Q Consensus 39 piI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai 118 (299)
T Consensus 11 ~~l~~~L~sl~~-q~~eIiVVDN~S~d~~~~----------~~~~---------------~~~~v~~i~~~~N~G~a~g~ 64 (237)
T cd02526 11 SKLKELLAALAE-QVDKVVVVDNSSGNDIEL----------RLRL---------------NSEKIELIHLGENLGIAKAL 64 (237)
T ss_pred HHHHHHHHHHHC-CCCEEEEEECCCCHHHHH----------HHHH---------------CCCCEEEEECCCCCCHHHHC
T ss_conf 999999997663-799899996988902899----------9986---------------19986999899977858872
Q ss_pred CCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CC-CCCEEEEEECCHHHCCCCCCEECCCCCCCCCCE
Q ss_conf 211011223---33311127864445443322112221223---43-220011243285443313310013333335300
Q gi|254780365|r 119 WCARNIIGD---NPFALLLPDMIMSPLEGENCMANMIKLYE---KE-GANILAVSECDPQLSCKYGMVQVGKAIDHQVFH 191 (299)
Q Consensus 119 ~~a~~~i~d---e~flv~~gD~i~~~~~~~~~l~~li~~~~---~~-~~~vi~~~~v~~~~~~~yGvi~~~~~~~~~~~~ 191 (299)
T Consensus 65 N~Gi~~a~~~~~d~i~~ln~D~~~~~~----~l~~l~~~~~~~~~~~~vg~~~p~~~d~~~~~~~~~~~~~~~------~ 134 (237)
T cd02526 65 NIGIKAALENGADYVLLFDQDSVPPPD----MVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGY------K 134 (237)
T ss_pred CCCCHHHHCCCCCEEEEECCCCCCCHH----HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC------C
T ss_conf 743033411797789993575655905----999999999852227988999717986899800454211253------3
Q ss_pred EEEECCCCCCCCCCCCE-EECHHHEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CEEEEEEEEEEEECCCHH
Q ss_conf 00002577888673423-30202002723311000122666767500378999998319-848999813786439988
Q gi|254780365|r 192 ISDMIEKPDSSTFISNF-FINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSERH-DFLAYHFKGHTYDCGSKK 267 (299)
Q Consensus 192 I~~~vEKP~~~~~~Snl-~~~GiYi~~~~i~~~L~~~~~~~~~gE~~ltD~i~~l~~~~-~v~a~~~~g~w~DiG~~~ 267 (299)
T Consensus 135 ~~~~~~~~~~~~-~~~~~~~sg-~lir~~~~~~vG~fde~fF~-y~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~G~~~ 209 (237)
T cd02526 135 LRIQKEGEEGLK-EVDFLITSG-SLISLEALEKVGGFDEDLFI-DYVDTEWCLRARSKGYKIYVVPDAVLKHELGDKR 209 (237)
T ss_pred CCCCCCCCCCCE-ECCEEEECC-EEEEHHHHHHHCCCCHHHCC-CCCHHHHHHHHHHCCCCEEEECCEEEEECCCCCC
T ss_conf 223544247844-604303014-37789999985799689779-3719999999998599799989889997899845