HHsearch alignment for GI: 254780365 and conserved domain: cd02540

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=100.00  E-value=0  Score=345.33  Aligned_cols=219  Identities=22%  Similarity=0.297  Sum_probs=182.8

Q ss_pred             EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCCEE
Q ss_conf             99956888833432440888333568836279999999997899889998135544410100117454445654187000
Q gi|254780365|r   10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKKAE   89 (299)
Q Consensus        10 avIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~~~   89 (299)
T Consensus         1 AvIlAaG~GtRl~~---~~PKpllpi~~kpii~~ii~~l~~~gi~~i~iv~~~~~e~i~~~~~~----------------   61 (229)
T cd02540           1 AVILAAGKGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----------------   61 (229)
T ss_pred             CEEECCCCCCCCCC---CCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCC----------------
T ss_conf             98946878757998---97841518998799999999999769975996357689999987543----------------


Q ss_pred             ECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEE
Q ss_conf             0113441124857998433342334665421101122--33331112786444544332211222122343220-01124
Q gi|254780365|r   90 LTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG--DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGAN-ILAVS  166 (299)
Q Consensus        90 ~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~--de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~-vi~~~  166 (299)
T Consensus        62 -----------~~i~~v~Q~~~lGta~Av~~a~~~i~~~~~~~lVl~gD~pli~---~~~l~~l~~~~~~~~~~~ti~~~  127 (229)
T cd02540          62 -----------PNVEFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLIT---PETLQRLLEAHREAGADVTVLTA  127 (229)
T ss_pred             -----------CCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC---HHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             -----------8726998068897378999998744588872999958964536---78899999999965996699998


Q ss_pred             ECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCC--CCCCCCCEEECHHHEECHH-HHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf             3285443313310013333335300000025778--8867342330202002723-311000122666767500378999
Q gi|254780365|r  167 ECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPD--SSTFISNFFINGRYILHPD-IFSILNDWKENEGKGEIQLTDSMR  243 (299)
Q Consensus       167 ~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~--~~~~~Snl~~~GiYi~~~~-i~~~L~~~~~~~~~gE~~ltD~i~  243 (299)
T Consensus       128 ~~--~~p~~YG~v~~d~~-----g~v~~ivEkk~~~~~~~~~~~~n~GiYif~~~~l~~~l~~l~~~~~~gE~~ltD~i~  200 (229)
T cd02540         128 EL--EDPTGYGRIIRDGN-----GKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIA  200 (229)
T ss_pred             EE--CCCCCCCEEEECCC-----CCEEEEEECCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHCCCCCCCCEEEHHHHHH
T ss_conf             60--48767867998899-----978999988787654345432222799985999999998479876688788999999


Q ss_pred             HHHHCC-CEEEEEEEEEEEECC--CHHH
Q ss_conf             998319-848999813786439--9889
Q gi|254780365|r  244 KLSERH-DFLAYHFKGHTYDCG--SKKG  268 (299)
Q Consensus       244 ~l~~~~-~v~a~~~~g~w~DiG--~~~~  268 (299)
T Consensus       201 ~~i~~g~kv~~~~~~~~~~~~Gin~~~d  228 (229)
T cd02540         201 LAVADGLKVAAVLADDEEEVLGVNDRVQ  228 (229)
T ss_pred             HHHHCCCCEEEEEECCHHHEECCCCHHH
T ss_conf             9998899189999288766137889787