HHsearch alignment for GI: 254780365 and conserved domain: cd02541
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=0 Score=488.10 Aligned_cols=267 Identities=49% Similarity=0.837 Sum_probs=244.3
Q ss_pred CEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCC
Q ss_conf 58999568888334324408883335688362799999999978998899981355444101001174544456541870
Q gi|254780365|r 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKK 87 (299)
Q Consensus 8 ~KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~ 87 (299)
T Consensus 1 ~KAvILAgG~GTRL~PlT~~~PKpLlpi~gkPii~~~i~~l~~~Gi~~iii~~~~~~~~I~~~f~~~~~~~~~l~~~~k~ 80 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT 80 (267)
T ss_pred CEEEEECCCCCCCCCHHHCCCCCCCCEECCEEHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHCCCH
T ss_conf 96999898774667842469984364899998699999999986998899991246666244506658899998526856
Q ss_pred EEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 00011344112485799843334233466542110112233331112786444544332211222122343220011243
Q gi|254780365|r 88 AELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSE 167 (299)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~de~flv~~gD~i~~~~~~~~~l~~li~~~~~~~~~vi~~~~ 167 (299)
T Consensus 81 ~~~~~-~~~~~~~~~i~~~~e~~~lGtggai~~a~~~~~~~~flv~~gD~l~~~~--~~~l~~li~~~~~~~~~~~~~~~ 157 (267)
T cd02541 81 DLLEE-VRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSK--EPCLKQLIEAYEKTGASVIAVEE 157 (267)
T ss_pred HHHHH-HHCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCEEEEECCEEEECC--CHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 55555-4224789559999778988767898721010499867999689888537--50668999999730872689999
Q ss_pred CCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 28544331331001333333530000002577888673423302020027233110001226667675003789999983
Q gi|254780365|r 168 CDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE 247 (299)
Q Consensus 168 v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~~~L~~~~~~~~~gE~~ltD~i~~l~~ 247 (299)
T Consensus 158 v~~~~~~~yGvv~~~~~-~~~~~~i~~~~EKP~~~~~~s~l~~~GiYi~~~~i~~~i~~~~~~~-~~e~~l~d~i~~li~ 235 (267)
T cd02541 158 VPPEDVSKYGIVKGEKI-DGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGK-GGEIQLTDAIAKLLE 235 (267)
T ss_pred ECCCCCCCCCEEEECCC-CCCEEEEEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHCCCCC-CCCCCHHHHHHHHHH
T ss_conf 68667873643896677-8706888876406887679853166344998899987897289999-983307799999985
Q ss_pred CCCEEEEEEEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 19848999813786439988999999998631
Q gi|254780365|r 248 RHDFLAYHFKGHTYDCGSKKGFVLANIAFALA 279 (299)
Q Consensus 248 ~~~v~a~~~~g~w~DiG~~~~yl~A~~~~al~ 279 (299)
T Consensus 236 ~~~v~~~~~~g~W~DiGtp~~y~~A~~~~~~~ 267 (267)
T cd02541 236 EEPVYAYVFEGKRYDCGNKLGYLKATVEFALK 267 (267)
T ss_pred CCCEEEEEECCEEEECCCHHHHHHHHHHHHCC
T ss_conf 79969998598889579989999999998659