HHsearch alignment for GI: 254780365 and conserved domain: cd04193
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=97.76 E-value=4e-05 Score=51.44 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=90.4
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEEC---CEEHHHHHHHHHHH----CC------CC-EEEEECCC-CCCCCHHHCCC
Q ss_conf 8999568888334324408883335688---36279999999997----89------98-89998135-54441010011
Q gi|254780365|r 9 KAVFPIAGLGMRFFPISKVIPKEMLAIV---DRPVIQYVIEEALE----AG------LT-DFVFVTGR-GKGLIKDYFDI 73 (299)
Q Consensus 9 KavIlAaG~GtRl~P~T~~~pKpllpi~---~kpiI~~~i~~l~~----~G------i~-~i~iv~~~-~k~~I~~~f~~ 73 (299)
T Consensus 17 avv~laGG~GTrlG---~~~pKg~~~i~~~~~~sl~~l~~e~i~~l~~~~~~~~~~~~~ip~~iMtS~~T~~~T~~~l~~ 93 (323)
T cd04193 17 AVLLLAGGQGTRLG---FDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRKFFKE 93 (323)
T ss_pred EEEEECCCCCCCCC---CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 99995788745568---999716257268899809999999999999998774388885169997885345899999986
Q ss_pred CH--HHHHHHHHCCCCEEECCC-CC---CCCCCCEEE----ECCCCCCCCCCCCCCCC------CCCC--CCCCCCCCCC
Q ss_conf 74--544456541870000113-44---112485799----84333423346654211------0112--2333311127
Q gi|254780365|r 74 QF--ELEQSLRKRNKKAELTLL-AE---SIPSIGNAV----FTWQYERKGLGHAVWCA------RNII--GDNPFALLLP 135 (299)
Q Consensus 74 ~~--~~~~~l~~~~~~~~~~~~-~~---~~~~~~~i~----~v~Q~~p~Gtg~Ai~~a------~~~i--~de~flv~~g 135 (299)
T Consensus 94 ~~~fGl~~--------~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~Gi~yi~v~~v 165 (323)
T cd04193 94 NNYFGLDP--------EQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSV 165 (323)
T ss_pred CCCCCCCH--------HHEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCEEEEEEEC
T ss_conf 76468885--------5647871687314868987156899751427999717999999878488999669889999965
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEE--EEEECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCC-C---CCC---
Q ss_conf 8644454433221122212234322001--124328544331331001333333530000002577888-6---734---
Q gi|254780365|r 136 DMIMSPLEGENCMANMIKLYEKEGANIL--AVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSS-T---FIS--- 206 (299)
Q Consensus 136 D~i~~~~~~~~~l~~li~~~~~~~~~vi--~~~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~-~---~~S--- 206 (299)
T Consensus 166 DN~L~~~~Dp----~~lG~~~~~~~~~~~kvv~K~~~~--ekvG~l~~~----~gk~~vvEYsel~~~~~~~~~~~g~l~ 235 (323)
T cd04193 166 DNILVKVADP----VFIGFCISKGADVGAKVVRKRYPT--EKVGVVVLV----DGKPQVVEYSEISDELAEKRDADGELQ 235 (323)
T ss_pred CCCCCCCCCH----HHHHHHHHCCCCEEEEEEECCCCC--CCEEEEEEE----CCEEEEEEECCCCHHHHHHHCCCCCEE
T ss_conf 7443232488----999999874996378998888899--831089998----990699984258988984018766165
Q ss_pred -CEEECHHHEECHHHH
Q ss_conf -233020200272331
Q gi|254780365|r 207 -NFFINGRYILHPDIF 221 (299)
Q Consensus 207 -nl~~~GiYi~~~~i~ 221 (299)
T Consensus 236 f~~gNi~~~~fsl~fl 251 (323)
T cd04193 236 YNAGNIANHFFSLDFL 251 (323)
T ss_pred ECCCCHHHHHEEHHHH
T ss_conf 1455677753139999