HHsearch alignment for GI: 254780365 and conserved domain: pfam01128
>pfam01128 IspD Uncharacterized protein family UPF0007.
Probab=99.25 E-value=3e-11 Score=89.12 Aligned_cols=208 Identities=17% Similarity=0.217 Sum_probs=105.2
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHCCCC
Q ss_conf 8999568888334324408883335688362799999999978-998899981355444101001174544456541870
Q gi|254780365|r 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEA-GLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKRNKK 87 (299)
Q Consensus 9 KavIlAaG~GtRl~P~T~~~pKpllpi~~kpiI~~~i~~l~~~-Gi~~i~iv~~~~k~~I~~~f~~~~~~~~~l~~~~~~ 87 (299)
T Consensus 2 ~aIIlAaG~G~R~~---~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~---~~~~-------~~~~----- 63 (221)
T pfam01128 2 VAVIPAAGSGKRMG---AGVPKQFLQLLGQPLLEHTVDAFLASPVVDRIVVAVSPDD---TPEF-------RQLL----- 63 (221)
T ss_pred EEEEECCEECCCCC---CCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECHHH---HHHH-------HHHC-----
T ss_conf 89993581061269---5898653668988899999999963888897999967788---9999-------9860-----
Q ss_pred EEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCEEEE
Q ss_conf 00011344112485799843334233466542110112233-331112786444544332211222122343-2200112
Q gi|254780365|r 88 AELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDN-PFALLLPDMIMSPLEGENCMANMIKLYEKE-GANILAV 165 (299)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~v~Q~~p~Gtg~Ai~~a~~~i~de-~flv~~gD~i~~~~~~~~~l~~li~~~~~~-~~~vi~~ 165 (299)
T Consensus 64 -----------~~~~i~~v~GG~--tR~~SV~ngL~~l~~~~~~VlIH-Da-aRP~v~~~~i~~li~~~~~~~~~~i~~- 127 (221)
T pfam01128 64 -----------GDPSIQLVAGGD--TRQDSVLNGLKALAGTAKFVLVH-DG-ARPCLPHADLARLLAALETGTQGAILA- 127 (221)
T ss_pred -----------CCCCEEEECCCC--CHHHHHHHHHHHHCCCCCEEEEE-EC-CCCCCCHHHHHHHHHHHHHHCCCCEEE-
T ss_conf -----------799879967996--38999999999835899989998-36-566799999999999986004861354-
Q ss_pred EECCHHHCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCCCCEEECHHHEECHHHHHH--H-CCCCCCCCCCCCCHHHHH
Q ss_conf 4328544331331001333333530000002577888673423302020027233110--0-012266676750037899
Q gi|254780365|r 166 SECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSI--L-NDWKENEGKGEIQLTDSM 242 (299)
Q Consensus 166 ~~v~~~~~~~yGvi~~~~~~~~~~~~I~~~vEKP~~~~~~Snl~~~GiYi~~~~i~~~--L-~~~~~~~~~gE~~ltD~i 242 (299)
T Consensus 128 ~p~~D-Ti-k----~v~~-----~~~i~~t~---dR----~~l~~----~QTPQ~F~~~~L~~a~~~~~-~~~~~~TDd~ 184 (221)
T pfam01128 128 LPVTD-TI-K----RVEA-----DGVVAGTP---DR----SGLWA----AQTPQGFRVDLLLAAHQRGD-QPGAEITDDA 184 (221)
T ss_pred ECCCC-CE-E----EECC-----CCCEECCC---CC----HHHEE----CCCCCCCCHHHHHHHHHHHH-HCCCCCCCHH
T ss_conf 12466-43-5----7537-----86044035---64----21011----00762006999999999888-6299976299
Q ss_pred HHHHHCC-CEEEEEEEEEEEECCCHHHHHHHH
Q ss_conf 9998319-848999813786439988999999
Q gi|254780365|r 243 RKLSERH-DFLAYHFKGHTYDCGSKKGFVLAN 273 (299)
Q Consensus 243 ~~l~~~~-~v~a~~~~g~w~DiG~~~~yl~A~ 273 (299)
T Consensus 185 sl~~~~g~~v~~v~G~~~N~KIT~~eDl~~ae 216 (221)
T pfam01128 185 SLVEHAGGSVQVVPGRPDNLKITTPEDLALAE 216 (221)
T ss_pred HHHHHCCCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 99997799779996584238878999999999