RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] (299 letters) >gnl|CDD|162203 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF. Length = 260 Score = 300 bits (770), Expect = 3e-82 Identities = 132/265 (49%), Positives = 171/265 (64%), Gaps = 5/265 (1%) Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLI 67 RKAV P AGLG RF P +K IPKEML IVD+P+IQYV+EEA+EAG+ D + VTGRGK I Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAI 60 Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127 +D+FD +ELE L KR K+ L + SI + + Q E+KGLGHAV CA +GD Sbjct: 61 EDHFDTSYELEHQLEKRGKEELLKEV-RSISPLATIFYVRQKEQKGLGHAVLCAEPFVGD 119 Query: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDH 187 PFA++L D I+ E + MI LYEK G +I+AV E + KYG++ G+ ++ Sbjct: 120 EPFAVILGDDIVV--SEEPALKQMIDLYEKYGCSIIAVEEVPKEEVSKYGVID-GEGVEE 176 Query: 188 QVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE 247 ++ I DM+EKP SN I GRY+L PDIF +L + G GEIQLTD++RKL E Sbjct: 177 GLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAG-GEIQLTDALRKLLE 235 Query: 248 RHDFLAYHFKGHTYDCGSKKGFVLA 272 + AY FKG YDCGSK G++ A Sbjct: 236 KETVYAYKFKGKRYDCGSKLGYLKA 260 >gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional. Length = 302 Score = 204 bits (521), Expect = 2e-53 Identities = 115/309 (37%), Positives = 174/309 (56%), Gaps = 26/309 (8%) Query: 5 KKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64 KV+KAV P+AGLG R P +K IPKEML +VD+P+IQYV+ E + AG+T+ V VT K Sbjct: 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSK 65 Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYER----KGLGHAVWC 120 I+++FD FELE L KR K+ L + + SI T R KGLGHAV C Sbjct: 66 NSIENHFDTSFELEAMLEKRVKRQ----LLDEVQSICPPHVTIMQVRQGLAKGLGHAVLC 121 Query: 121 ARNIIGDNPFALLLPDMIM----SPLEGENCMANMIKLYEKEGANILAVSECDPQLS--- 173 A ++GD P A++LPD+I+ S L +N +A MI+ +++ G + + V + Sbjct: 122 AHPVVGDEPVAVILPDVILDEYESDLSQDN-LAEMIRRFDETGHSQIMVEPVADVTAYGV 180 Query: 174 --CKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENE 231 CK + G+++ + ++EKP + SN I GRY+L DI+ +L K Sbjct: 181 VDCKGVELAPGESVP-----MVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLA--KTPP 233 Query: 232 GKG-EIQLTDSMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETD 290 G G EIQLTD++ L E+ AYH KG ++DCG+K G++ A + + + + ++ + Sbjct: 234 GAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAW 293 Query: 291 LKTLVSALK 299 L+ + K Sbjct: 294 LEEEMGIKK 302 >gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional. Length = 297 Score = 187 bits (475), Expect = 5e-48 Identities = 111/295 (37%), Positives = 163/295 (55%), Gaps = 22/295 (7%) Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68 KAV P+AGLGM P +K IPKEML IVD+P+IQY+++E + AG+ + V VT K ++ Sbjct: 5 KAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVE 64 Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAE--SIPSIGNAVFT-WQYERKGLGHAVWCARNII 125 ++FD +ELE L +R K+ LLAE SI G + Q + GLGH++ CAR I Sbjct: 65 NHFDTSYELESLLEQRVKR---QLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAI 121 Query: 126 GDNPFALLLPDMIM-----SPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQ 180 GDNPF ++LPD+++ PL +A MI + + G + + LS +Y ++Q Sbjct: 122 GDNPFVVVLPDVVIDDASADPLRYN--LAAMIARFNETGRSQVLAKRMPGDLS-EYSVIQ 178 Query: 181 VGKAIDH--QVFHISDMIEKPDS-STFISNFFINGRYILHPDIFSILNDWKENEGKGEIQ 237 + +D +V I + IEKPD T S+ GRY+L DI+ L E G IQ Sbjct: 179 TKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELER-TEPGAWGRIQ 237 Query: 238 LTDSMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALAR----QDIRSDIE 288 LTD++ +L+++ A G +YDCG K G++ A + + L R IE Sbjct: 238 LTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRNLKEGAKFRKGIE 292 >gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose. Length = 297 Score = 179 bits (454), Expect = 9e-46 Identities = 103/278 (37%), Positives = 159/278 (57%), Gaps = 12/278 (4%) Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68 KAV P+AGLGM P +K IPKEML IVD+P+IQY+++E + AG+ + V VT K ++ Sbjct: 5 KAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVE 64 Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDN 128 ++FD +ELE L +R K+ L + P + Q + GLGH++ CAR ++GDN Sbjct: 65 NHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDN 124 Query: 129 PFALLLPDMIM-----SPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGK 183 PF ++LPD+I+ PL +A MI + + G + + LS +Y ++Q + Sbjct: 125 PFVVVLPDIIIDDATADPLRYN--LAAMIARFNETGRSQVLAKRMPGDLS-EYSVIQTKE 181 Query: 184 AIDH--QVFHISDMIEKPDS-STFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240 +D +V I + IEKPD T S+ GRY+L DI++ L + E G IQLTD Sbjct: 182 PLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAEL-ERTEPGAWGRIQLTD 240 Query: 241 SMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFAL 278 ++ +L+++ A G +YDCG K G++ A + + L Sbjct: 241 AIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGL 278 >gnl|CDD|162250 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase. Length = 353 Score = 85.5 bits (212), Expect = 1e-17 Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 54/275 (19%) Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKG-LI 67 KA+ AG G R P++ PK+++ + ++P++QY IE+ EAG+TD V G G I Sbjct: 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEI 60 Query: 68 KDY------FDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCA 121 K+ F + + Q E GL HAV+ A Sbjct: 61 KEIVGEGERFGAKIT----------------------------YIVQGEPLGLAHAVYTA 92 Query: 122 RNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEG--ANILAVSECDPQLSCKYGMV 179 R+ +GD+ F + L D ++ +G ++ +K +E++ A IL DP Sbjct: 93 RDFLGDDDFVVYLGDNLIQ--DG---ISRFVKSFEEKDYDALILLTKVRDPT-------- 139 Query: 180 QVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLT 239 G A+ I ++EKP SN + G Y+ P IF + + K + +GE+++T Sbjct: 140 AFGVAVLEDGKRILKLVEKPK--EPPSNLAVVGLYMFRPLIFEAIKNIKPS-WRGELEIT 196 Query: 240 DSMRKLSER-HDFLAYHFKGHTYDCGSKKGFVLAN 273 D+++ L E+ + G D G + + AN Sbjct: 197 DAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDAN 231 >gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional. Length = 292 Score = 58.9 bits (142), Expect = 2e-09 Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 48/288 (16%) Query: 6 KVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFV-----T 60 K RK + G G R +P++ + K++L I D+P+I Y + + AG+ D + + T Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDT 61 Query: 61 GRGKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWC 120 R + L+ D Q+ L N + Q GL A Sbjct: 62 PRFQQLLGD--GSQWGL------------------------NLQYKVQPSPDGLAQAFII 95 Query: 121 ARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQ 180 IG + AL+L D I + M + ++ GA + A DP+ +YG+V+ Sbjct: 96 GEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVN--KESGATVFAYHVNDPE---RYGVVE 150 Query: 181 VGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240 D IS + EKP SN+ + G Y D+ + + K + +GE+++TD Sbjct: 151 ----FDQNGTAIS-LEEKPLQPK--SNYAVTGLYFYDNDVVEMAKNLKPS-ARGELEITD 202 Query: 241 SMRKLSERHDF-LAYHFKGHTY-DCGSKKGFVLAN--IAFALARQDIR 284 R E+ +A +G+ + D G+ + + A+ IA RQ ++ Sbjct: 203 INRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLK 250 >gnl|CDD|184644 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 448 Score = 49.0 bits (117), Expect = 1e-06 Identities = 62/245 (25%), Positives = 101/245 (41%), Gaps = 50/245 (20%) Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68 +A+ AG G R + IPK + I +P+I +VI+ A + V V G L+K Sbjct: 2 RALVLAAGKGTR---MKSKIPKVLHKISGKPMINWVIDTAKKVAQKVGV-VLGHEAELVK 57 Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDN 128 L E + +F Q E+ G HAV CAR+ I Sbjct: 58 KL----------------------LPEWV-----KIFL-QEEQLGTAHAVMCARDFIEPG 89 Query: 129 PFALLL-PDMIMSPLEGENCMANMIKLYEKEGAN--ILAVSECDPQLSCKYGMVQVGKAI 185 L+L D+ PL EN + +I+ + ++GA+ IL DP YG + + Sbjct: 90 DDLLILYGDV---PLISENTLKRLIEEHNRKGADVTILVADLEDPT---GYGRI-IRDGG 142 Query: 186 DHQVFHISDMIEKPDSSTFISN--FFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMR 243 +++ D E+ I+ + +G ++L +L K KGE LTD++ Sbjct: 143 KYRIVEDKDAPEEEKKIKEINTGIYVFSGDFLLE-----VLPKIKNENAKGEYYLTDAV- 196 Query: 244 KLSER 248 +E+ Sbjct: 197 NFAEK 201 >gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. Length = 451 Score = 49.2 bits (118), Expect = 1e-06 Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 51/233 (21%) Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYF--- 71 AG G R S +PK + + +P++++VI+ A G V G G ++ Sbjct: 8 AGKGTRMK--SD-LPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR 64 Query: 72 DIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFA 131 D+ + L Q E+ G GHAV A + D+ Sbjct: 65 DVNWVL------------------------------QAEQLGTGHAVLQALPFLPDDGDV 94 Query: 132 LLL-PDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQVF 190 L+L D+ PL + +++ + + G +L DP YG + D +V Sbjct: 95 LVLYGDV---PLISAETLERLLEAHRQNGITLLTAKLPDPT---GYGRIIREN--DGKVT 146 Query: 191 HISDMIEKPDSSTFISNFF-IN-GRYILH-PDIFSILNDWKENEGKGEIQLTD 240 I +E D++ IN G Y+ + L N +GE LTD Sbjct: 147 AI---VEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTD 196 >gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. Length = 286 Score = 45.5 bits (108), Expect = 2e-05 Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 52/234 (22%) Query: 16 GLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT-----GRGKGLIKDY 70 G G R +PI++ + K++L I D+P+I Y + + AG+ D + ++ R + L+ D Sbjct: 8 GSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDG 67 Query: 71 FDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPF 130 L + Q GL A + IG +P Sbjct: 68 SQWGVNLS--------------------------YAVQPSPDGLAQAFIIGEDFIGGDPS 101 Query: 131 ALLLPDMIMSPLEGENCMANMIKLYEKE-GANILAVSECDPQLSCKYGMVQV---GKAID 186 AL+L D I G + + + +E GA + A DP+ +YG+V+ G+AI Sbjct: 102 ALVLGDNIFY---GHDLSDLLKRAAARESGATVFAYQVSDPE---RYGVVEFDSNGRAIS 155 Query: 187 HQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240 + EKP + SN+ + G Y + I K + +GE+++TD Sbjct: 156 IE--------EKP--AQPKSNYAVTGLYFYDNRVVEIARQLKPSA-RGELEITD 198 >gnl|CDD|172831 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 459 Score = 45.1 bits (107), Expect = 2e-05 Identities = 53/246 (21%), Positives = 93/246 (37%), Gaps = 45/246 (18%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69 A+ AG G R + + K M + RP++ + + A EAG V V G +++ Sbjct: 6 AIILAAGKGTR---MKSDLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVRE 62 Query: 70 YFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNP 129 +F G+ F Q E+ G GHAV CA + + Sbjct: 63 HFAGD--------------------------GDVSFALQEEQLGTGHAVACAAPAL--DG 94 Query: 130 FA----LLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAI 185 F+ +L D+ PL + M+ + GA + ++ L +G ++ + Sbjct: 95 FSGTVLILCGDV---PLLRAETLQGMLAAHRATGAAVTVLTAR---LENPFGYGRIVRDA 148 Query: 186 DHQVFHISDMIEKPDSSTFISNFFIN-GRYILHPD-IFSILNDWKENEGKGEIQLTDSMR 243 D +V I + EK + S +N G Y + +F + + +GE LTD + Sbjct: 149 DGRVLRIVE--EKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVA 206 Query: 244 KLSERH 249 + Sbjct: 207 MAAAEG 212 >gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene. Length = 254 Score = 44.7 bits (106), Expect = 3e-05 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 9/90 (10%) Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68 KAV GLG R + + PK M+ I +P++ ++++ G+ DF+ G +IK Sbjct: 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIK 60 Query: 69 DYF--------DIQFEL-EQSLRKRNKKAE 89 +YF D+ F + + ++ +K+ E Sbjct: 61 EYFANYFLHMSDVTFHMADNTMEVHHKRVE 90 >gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 446 Score = 38.7 bits (91), Expect = 0.002 Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 39/127 (30%) Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQ 74 AG G R + +PK + + RP++ +V+ A G + V G G Sbjct: 13 AGEGTR---MKSSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPG----------A 59 Query: 75 FELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNII--------- 125 + + K AE+ + Q ER G HAV AR + Sbjct: 60 EAVAAAAAKIAPDAEIFV---------------QKERLGTAHAVLAAREALAGGYGDVLV 104 Query: 126 --GDNPF 130 GD P Sbjct: 105 LYGDTPL 111 >gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 458 Score = 37.1 bits (87), Expect = 0.006 Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 42/158 (26%) Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLI 67 R A+ AG G R SK +PK + + +P++++V++ +AG+ V V G G + Sbjct: 3 RYAIILAAGKGTRM--KSK-LPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEV 59 Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127 K+ ++S F Q E+ G GHAV A + D Sbjct: 60 KEVLG-----DRSE-----------------------FALQEEQLGTGHAVMQAEEFLAD 91 Query: 128 NPFALLLPDMIM-----SPLEGENCMANMIKLYEKEGA 160 + +PL + N+I +E+ A Sbjct: 92 ------KEGTTLVICGDTPLITAETLKNLIDFHEEHKA 123 >gnl|CDD|129545 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. Length = 217 Score = 33.4 bits (77), Expect = 0.071 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60 AV P AG G RF +PK+ L + RP++++ ++ L D V V Sbjct: 2 AVIPAAGRGTRF---GSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVV 49 >gnl|CDD|172834 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 481 Score = 32.3 bits (73), Expect = 0.16 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRG 63 AG G R + +PK + + RP++ + ++ A + G V VTG G Sbjct: 15 AGQGTR---MKSALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHG 60 >gnl|CDD|163336 TIGR03584, PseF, pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Length = 222 Score = 31.1 bits (71), Expect = 0.37 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Query: 25 SKVIP-KEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60 SK IP K + +P+I Y IE AL +GL D V V+ Sbjct: 10 SKRIPRKNIKPFCGKPMIAYSIEAALNSGLFDKVVVS 46 >gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. Length = 280 Score = 30.4 bits (69), Expect = 0.62 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%) Query: 186 DHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKG----EIQLTDS 241 H++F+I + I KP I F I I I+ N W+ N +G L + Sbjct: 161 QHKLFYIQEYINKPGRD--IRVFVIGDEAIAA--IYRYSNHWRTNTARGGKAEPCPLDEE 216 Query: 242 MRKLSER 248 + +L+ + Sbjct: 217 VEELAVK 223 >gnl|CDD|181813 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional. Length = 378 Score = 30.2 bits (69), Expect = 0.64 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60 AG RF S + K+ L I +P+ +V+E A + V Sbjct: 13 AGRSTRF---SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVV 55 >gnl|CDD|179510 PRK02947, PRK02947, hypothetical protein; Provisional. Length = 246 Score = 29.8 bits (68), Expect = 0.79 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTG 61 AV I GL P+S V+ A + + V E +E G+T VF++ Sbjct: 175 AVLEIPGLEAPVGPVSTVVG----AAILNAIFAEVAERLVERGITPPVFLSA 222 >gnl|CDD|184007 PRK13368, PRK13368, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional. Length = 238 Score = 29.5 bits (67), Expect = 1.1 Identities = 12/30 (40%), Positives = 20/30 (66%) Query: 30 KEMLAIVDRPVIQYVIEEALEAGLTDFVFV 59 K +L I+ +P+IQ+V E A +A + V+V Sbjct: 19 KPLLDILGKPMIQHVYERAAQAAGVEEVYV 48 >gnl|CDD|180091 PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional. Length = 245 Score = 28.9 bits (66), Expect = 1.7 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Query: 29 PKEMLA-IVDRPVIQYVIEEALEAGLTDFVFVT 60 P + LA I +P+I V E A +AG V T Sbjct: 17 PGKPLADIGGKPMIVRVYERASKAGADRVVVAT 49 >gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase. Length = 608 Score = 28.2 bits (63), Expect = 2.3 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 45 IEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSL 81 I+E +E G + +FV R GLI FD Q L+Q L Sbjct: 561 IDEIVEIGYLNGLFVLARSIGLIGHTFD-QKRLKQPL 596 >gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase. Length = 929 Score = 27.9 bits (62), Expect = 2.9 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 181 VGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWK 228 + K I +FH++ + P++ F + + R D+F L ++ Sbjct: 405 LAKMIQAPIFHVNA--DDPEAVAFATRLAVEYRNTFKRDVFIDLVGYR 450 >gnl|CDD|178105 PLN02487, PLN02487, zeta-carotene desaturase. Length = 569 Score = 27.1 bits (60), Expect = 5.4 Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 198 KPDSSTFISNFFINGRY 214 +PD T ISNFF+ G Y Sbjct: 510 RPDQKTPISNFFLAGSY 526 >gnl|CDD|180308 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau; Validated. Length = 605 Score = 27.1 bits (60), Expect = 6.2 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 26 KVIPKEML-AIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKR 84 K + KE L + IE L +FV + R K + F+ + L + + Sbjct: 305 KKLSKEQLKTLNLEKQKLLSIEFNTNFLLNNFVSLINRLKASVNQVFEFEIYLYKIINAN 364 Query: 85 NKKAE 89 K E Sbjct: 365 PDKLE 369 >gnl|CDD|132317 TIGR03274, methan_mark_7, putative methanogenesis marker protein 7. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Length = 302 Score = 27.0 bits (60), Expect = 6.8 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%) Query: 232 GKGEIQLTDSMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANI 274 G+ QL+D R+L E HD + F G+ DC KK + +I Sbjct: 112 GRRIAQLSDEERRLIEEHDLAIFVF-GNFEDCIKKKMPLFRDI 153 >gnl|CDD|131779 TIGR02732, zeta_caro_desat, carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474 Score = 26.7 bits (59), Expect = 7.0 Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 198 KPDSSTFISNFFINGRY 214 +PD T ISNFF+ G Y Sbjct: 434 RPDQKTPISNFFLAGSY 450 >gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional. Length = 456 Score = 26.5 bits (59), Expect = 8.6 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 30/104 (28%) Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQ 74 AG G R + +PK + + +P++Q+VI+ A E G V G G L+K Sbjct: 13 AGKGTRMY---SDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQ----- 64 Query: 75 FELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAV 118 TL E + N V Q E+ G GHA+ Sbjct: 65 ----------------TLADEPL----NWVL--QAEQLGTGHAM 86 >gnl|CDD|178682 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional. Length = 1195 Score = 26.4 bits (58), Expect = 9.4 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Query: 140 SPLE-GENCMANMIKLYEKEGANIL-AVSECDPQLSCK 175 SP+ G N MA+ ++ E N+L VS C+ ++ C+ Sbjct: 804 SPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCR 841 >gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional. Length = 391 Score = 26.2 bits (58), Expect = 10.0 Identities = 8/30 (26%), Positives = 14/30 (46%) Query: 231 EGKGEIQLTDSMRKLSERHDFLAYHFKGHT 260 +G+ E DS+ + E D + F+ T Sbjct: 114 DGQVETIFDDSIATIDEHRDGVRVTFERGT 143 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.139 0.414 Gapped Lambda K H 0.267 0.0719 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,974,977 Number of extensions: 324956 Number of successful extensions: 652 Number of sequences better than 10.0: 1 Number of HSP's gapped: 637 Number of HSP's successfully gapped: 40 Length of query: 299 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 206 Effective length of database: 3,984,929 Effective search space: 820895374 Effective search space used: 820895374 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (25.8 bits)