RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate
uridylyltransferase protein [Candidatus Liberibacter asiaticus str.
psy62]
(299 letters)
>gnl|CDD|162203 TIGR01099, galU, UTP-glucose-1-phosphate uridylyltransferase.
Built to distinquish between the highly similar genes
galU and galF.
Length = 260
Score = 300 bits (770), Expect = 3e-82
Identities = 132/265 (49%), Positives = 171/265 (64%), Gaps = 5/265 (1%)
Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLI 67
RKAV P AGLG RF P +K IPKEML IVD+P+IQYV+EEA+EAG+ D + VTGRGK I
Sbjct: 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAI 60
Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127
+D+FD +ELE L KR K+ L + SI + + Q E+KGLGHAV CA +GD
Sbjct: 61 EDHFDTSYELEHQLEKRGKEELLKEV-RSISPLATIFYVRQKEQKGLGHAVLCAEPFVGD 119
Query: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDH 187
PFA++L D I+ E + MI LYEK G +I+AV E + KYG++ G+ ++
Sbjct: 120 EPFAVILGDDIVV--SEEPALKQMIDLYEKYGCSIIAVEEVPKEEVSKYGVID-GEGVEE 176
Query: 188 QVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE 247
++ I DM+EKP SN I GRY+L PDIF +L + G GEIQLTD++RKL E
Sbjct: 177 GLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAG-GEIQLTDALRKLLE 235
Query: 248 RHDFLAYHFKGHTYDCGSKKGFVLA 272
+ AY FKG YDCGSK G++ A
Sbjct: 236 KETVYAYKFKGKRYDCGSKLGYLKA 260
>gnl|CDD|184021 PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase
subunit GalU; Provisional.
Length = 302
Score = 204 bits (521), Expect = 2e-53
Identities = 115/309 (37%), Positives = 174/309 (56%), Gaps = 26/309 (8%)
Query: 5 KKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64
KV+KAV P+AGLG R P +K IPKEML +VD+P+IQYV+ E + AG+T+ V VT K
Sbjct: 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSK 65
Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYER----KGLGHAVWC 120
I+++FD FELE L KR K+ L + + SI T R KGLGHAV C
Sbjct: 66 NSIENHFDTSFELEAMLEKRVKRQ----LLDEVQSICPPHVTIMQVRQGLAKGLGHAVLC 121
Query: 121 ARNIIGDNPFALLLPDMIM----SPLEGENCMANMIKLYEKEGANILAVSECDPQLS--- 173
A ++GD P A++LPD+I+ S L +N +A MI+ +++ G + + V +
Sbjct: 122 AHPVVGDEPVAVILPDVILDEYESDLSQDN-LAEMIRRFDETGHSQIMVEPVADVTAYGV 180
Query: 174 --CKYGMVQVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENE 231
CK + G+++ + ++EKP + SN I GRY+L DI+ +L K
Sbjct: 181 VDCKGVELAPGESVP-----MVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLA--KTPP 233
Query: 232 GKG-EIQLTDSMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETD 290
G G EIQLTD++ L E+ AYH KG ++DCG+K G++ A + + + + ++ +
Sbjct: 234 GAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAW 293
Query: 291 LKTLVSALK 299
L+ + K
Sbjct: 294 LEEEMGIKK 302
>gnl|CDD|182252 PRK10122, PRK10122, GalU regulator GalF; Provisional.
Length = 297
Score = 187 bits (475), Expect = 5e-48
Identities = 111/295 (37%), Positives = 163/295 (55%), Gaps = 22/295 (7%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
KAV P+AGLGM P +K IPKEML IVD+P+IQY+++E + AG+ + V VT K ++
Sbjct: 5 KAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVE 64
Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAE--SIPSIGNAVFT-WQYERKGLGHAVWCARNII 125
++FD +ELE L +R K+ LLAE SI G + Q + GLGH++ CAR I
Sbjct: 65 NHFDTSYELESLLEQRVKR---QLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAI 121
Query: 126 GDNPFALLLPDMIM-----SPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQ 180
GDNPF ++LPD+++ PL +A MI + + G + + LS +Y ++Q
Sbjct: 122 GDNPFVVVLPDVVIDDASADPLRYN--LAAMIARFNETGRSQVLAKRMPGDLS-EYSVIQ 178
Query: 181 VGKAIDH--QVFHISDMIEKPDS-STFISNFFINGRYILHPDIFSILNDWKENEGKGEIQ 237
+ +D +V I + IEKPD T S+ GRY+L DI+ L E G IQ
Sbjct: 179 TKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELER-TEPGAWGRIQ 237
Query: 238 LTDSMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALAR----QDIRSDIE 288
LTD++ +L+++ A G +YDCG K G++ A + + L R IE
Sbjct: 238 LTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRNLKEGAKFRKGIE 292
>gnl|CDD|130175 TIGR01105, galF, UTP-glucose-1-phosphate uridylyltransferase,
non-catalytic GalF subunit. GalF is a non-catalytic
subunit of the UTP-glucose pyrophosphorylase modulating
the enzyme activity to increase the formation of
UDP-glucose.
Length = 297
Score = 179 bits (454), Expect = 9e-46
Identities = 103/278 (37%), Positives = 159/278 (57%), Gaps = 12/278 (4%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
KAV P+AGLGM P +K IPKEML IVD+P+IQY+++E + AG+ + V VT K ++
Sbjct: 5 KAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVE 64
Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDN 128
++FD +ELE L +R K+ L + P + Q + GLGH++ CAR ++GDN
Sbjct: 65 NHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVGDN 124
Query: 129 PFALLLPDMIM-----SPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGK 183
PF ++LPD+I+ PL +A MI + + G + + LS +Y ++Q +
Sbjct: 125 PFVVVLPDIIIDDATADPLRYN--LAAMIARFNETGRSQVLAKRMPGDLS-EYSVIQTKE 181
Query: 184 AIDH--QVFHISDMIEKPDS-STFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240
+D +V I + IEKPD T S+ GRY+L DI++ L + E G IQLTD
Sbjct: 182 PLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAEL-ERTEPGAWGRIQLTD 240
Query: 241 SMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFAL 278
++ +L+++ A G +YDCG K G++ A + + L
Sbjct: 241 AIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGL 278
>gnl|CDD|162250 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase,
long form. Alternate name: dTDP-D-glucose synthase.
Length = 353
Score = 85.5 bits (212), Expect = 1e-17
Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 54/275 (19%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKG-LI 67
KA+ AG G R P++ PK+++ + ++P++QY IE+ EAG+TD V G G I
Sbjct: 1 KALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEI 60
Query: 68 KDY------FDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCA 121
K+ F + + Q E GL HAV+ A
Sbjct: 61 KEIVGEGERFGAKIT----------------------------YIVQGEPLGLAHAVYTA 92
Query: 122 RNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEG--ANILAVSECDPQLSCKYGMV 179
R+ +GD+ F + L D ++ +G ++ +K +E++ A IL DP
Sbjct: 93 RDFLGDDDFVVYLGDNLIQ--DG---ISRFVKSFEEKDYDALILLTKVRDPT-------- 139
Query: 180 QVGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLT 239
G A+ I ++EKP SN + G Y+ P IF + + K + +GE+++T
Sbjct: 140 AFGVAVLEDGKRILKLVEKPK--EPPSNLAVVGLYMFRPLIFEAIKNIKPS-WRGELEIT 196
Query: 240 DSMRKLSER-HDFLAYHFKGHTYDCGSKKGFVLAN 273
D+++ L E+ + G D G + + AN
Sbjct: 197 DAIQWLIEKGYKVGGSKVTGWWKDTGKPEDLLDAN 231
>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA;
Provisional.
Length = 292
Score = 58.9 bits (142), Expect = 2e-09
Identities = 71/288 (24%), Positives = 122/288 (42%), Gaps = 48/288 (16%)
Query: 6 KVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFV-----T 60
K RK + G G R +P++ + K++L I D+P+I Y + + AG+ D + + T
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDT 61
Query: 61 GRGKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWC 120
R + L+ D Q+ L N + Q GL A
Sbjct: 62 PRFQQLLGD--GSQWGL------------------------NLQYKVQPSPDGLAQAFII 95
Query: 121 ARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQ 180
IG + AL+L D I + M + ++ GA + A DP+ +YG+V+
Sbjct: 96 GEEFIGGDDCALVLGDNIFYGHDLPKLMEAAVN--KESGATVFAYHVNDPE---RYGVVE 150
Query: 181 VGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240
D IS + EKP SN+ + G Y D+ + + K + +GE+++TD
Sbjct: 151 ----FDQNGTAIS-LEEKPLQPK--SNYAVTGLYFYDNDVVEMAKNLKPS-ARGELEITD 202
Query: 241 SMRKLSERHDF-LAYHFKGHTY-DCGSKKGFVLAN--IAFALARQDIR 284
R E+ +A +G+ + D G+ + + A+ IA RQ ++
Sbjct: 203 INRIYMEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIATIEERQGLK 250
>gnl|CDD|184644 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 49.0 bits (117), Expect = 1e-06
Identities = 62/245 (25%), Positives = 101/245 (41%), Gaps = 50/245 (20%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
+A+ AG G R + IPK + I +P+I +VI+ A + V V G L+K
Sbjct: 2 RALVLAAGKGTR---MKSKIPKVLHKISGKPMINWVIDTAKKVAQKVGV-VLGHEAELVK 57
Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDN 128
L E + +F Q E+ G HAV CAR+ I
Sbjct: 58 KL----------------------LPEWV-----KIFL-QEEQLGTAHAVMCARDFIEPG 89
Query: 129 PFALLL-PDMIMSPLEGENCMANMIKLYEKEGAN--ILAVSECDPQLSCKYGMVQVGKAI 185
L+L D+ PL EN + +I+ + ++GA+ IL DP YG + +
Sbjct: 90 DDLLILYGDV---PLISENTLKRLIEEHNRKGADVTILVADLEDPT---GYGRI-IRDGG 142
Query: 186 DHQVFHISDMIEKPDSSTFISN--FFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMR 243
+++ D E+ I+ + +G ++L +L K KGE LTD++
Sbjct: 143 KYRIVEDKDAPEEEKKIKEINTGIYVFSGDFLLE-----VLPKIKNENAKGEYYLTDAV- 196
Query: 244 KLSER 248
+E+
Sbjct: 197 NFAEK 201
>gnl|CDD|162235 TIGR01173, glmU, UDP-N-acetylglucosamine
diphosphorylase/glucosamine-1-phosphate
N-acetyltransferase. This protein is a bifunctional
enzyme, GlmU, which catalyzes last two reactions in the
four-step pathway of UDP-N-acetylglucosamine
biosynthesis from fructose-6-phosphate. Its reaction
product is required from peptidoglycan biosynthesis, LPS
biosynthesis in species with LPS, and certain other
processes.
Length = 451
Score = 49.2 bits (118), Expect = 1e-06
Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 51/233 (21%)
Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYF--- 71
AG G R S +PK + + +P++++VI+ A G V G G ++
Sbjct: 8 AGKGTRMK--SD-LPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR 64
Query: 72 DIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFA 131
D+ + L Q E+ G GHAV A + D+
Sbjct: 65 DVNWVL------------------------------QAEQLGTGHAVLQALPFLPDDGDV 94
Query: 132 LLL-PDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQVF 190
L+L D+ PL + +++ + + G +L DP YG + D +V
Sbjct: 95 LVLYGDV---PLISAETLERLLEAHRQNGITLLTAKLPDPT---GYGRIIREN--DGKVT 146
Query: 191 HISDMIEKPDSSTFISNFF-IN-GRYILH-PDIFSILNDWKENEGKGEIQLTD 240
I +E D++ IN G Y+ + L N +GE LTD
Sbjct: 147 AI---VEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTD 196
>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short
form. This model describes a tightly conserved but
broadly distributed subfamily (here designated as short
form) of known and putative bacterial
glucose-1-phosphate thymidylyltransferases. It is well
characterized in several species as the first of four
enzymes involved in the biosynthesis of dTDP-L-rhamnose,
a cell wall constituent and a feedback inhibitor of the
enzyme.
Length = 286
Score = 45.5 bits (108), Expect = 2e-05
Identities = 57/234 (24%), Positives = 97/234 (41%), Gaps = 52/234 (22%)
Query: 16 GLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT-----GRGKGLIKDY 70
G G R +PI++ + K++L I D+P+I Y + + AG+ D + ++ R + L+ D
Sbjct: 8 GSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDG 67
Query: 71 FDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPF 130
L + Q GL A + IG +P
Sbjct: 68 SQWGVNLS--------------------------YAVQPSPDGLAQAFIIGEDFIGGDPS 101
Query: 131 ALLLPDMIMSPLEGENCMANMIKLYEKE-GANILAVSECDPQLSCKYGMVQV---GKAID 186
AL+L D I G + + + +E GA + A DP+ +YG+V+ G+AI
Sbjct: 102 ALVLGDNIFY---GHDLSDLLKRAAARESGATVFAYQVSDPE---RYGVVEFDSNGRAIS 155
Query: 187 HQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTD 240
+ EKP + SN+ + G Y + I K + +GE+++TD
Sbjct: 156 IE--------EKP--AQPKSNYAVTGLYFYDNRVVEIARQLKPSA-RGELEITD 198
>gnl|CDD|172831 PRK14355, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 459
Score = 45.1 bits (107), Expect = 2e-05
Identities = 53/246 (21%), Positives = 93/246 (37%), Gaps = 45/246 (18%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69
A+ AG G R + + K M + RP++ + + A EAG V V G +++
Sbjct: 6 AIILAAGKGTR---MKSDLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVRE 62
Query: 70 YFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNP 129
+F G+ F Q E+ G GHAV CA + +
Sbjct: 63 HFAGD--------------------------GDVSFALQEEQLGTGHAVACAAPAL--DG 94
Query: 130 FA----LLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAI 185
F+ +L D+ PL + M+ + GA + ++ L +G ++ +
Sbjct: 95 FSGTVLILCGDV---PLLRAETLQGMLAAHRATGAAVTVLTAR---LENPFGYGRIVRDA 148
Query: 186 DHQVFHISDMIEKPDSSTFISNFFIN-GRYILHPD-IFSILNDWKENEGKGEIQLTDSMR 243
D +V I + EK + S +N G Y + +F + + +GE LTD +
Sbjct: 149 DGRVLRIVE--EKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVA 206
Query: 244 KLSERH 249
+
Sbjct: 207 MAAAEG 212
>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate
cytidylyltransferase. Members of this family are the
enzyme glucose-1-phosphate cytidylyltransferase, also
called CDP-glucose pyrophosphorylase, the product of
the rfbF gene.
Length = 254
Score = 44.7 bits (106), Expect = 3e-05
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68
KAV GLG R + + PK M+ I +P++ ++++ G+ DF+ G +IK
Sbjct: 1 KAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIK 60
Query: 69 DYF--------DIQFEL-EQSLRKRNKKAE 89
+YF D+ F + + ++ +K+ E
Sbjct: 61 EYFANYFLHMSDVTFHMADNTMEVHHKRVE 90
>gnl|CDD|184642 PRK14353, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 446
Score = 38.7 bits (91), Expect = 0.002
Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 39/127 (30%)
Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQ 74
AG G R + +PK + + RP++ +V+ A G + V G G
Sbjct: 13 AGEGTR---MKSSLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPG----------A 59
Query: 75 FELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNII--------- 125
+ + K AE+ + Q ER G HAV AR +
Sbjct: 60 EAVAAAAAKIAPDAEIFV---------------QKERLGTAHAVLAAREALAGGYGDVLV 104
Query: 126 --GDNPF 130
GD P
Sbjct: 105 LYGDTPL 111
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 37.1 bits (87), Expect = 0.006
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 42/158 (26%)
Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLI 67
R A+ AG G R SK +PK + + +P++++V++ +AG+ V V G G +
Sbjct: 3 RYAIILAAGKGTRM--KSK-LPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEV 59
Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127
K+ ++S F Q E+ G GHAV A + D
Sbjct: 60 KEVLG-----DRSE-----------------------FALQEEQLGTGHAVMQAEEFLAD 91
Query: 128 NPFALLLPDMIM-----SPLEGENCMANMIKLYEKEGA 160
+ +PL + N+I +E+ A
Sbjct: 92 ------KEGTTLVICGDTPLITAETLKNLIDFHEEHKA 123
>gnl|CDD|129545 TIGR00453, ispD, 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase. Members of this protein family
are 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase, the IspD protein of the
deoxyxylulose pathway of IPP biosynthesis. In about
twenty percent of bacterial genomes, this protein
occurs as IspDF, a bifunctional fusion protein.
Length = 217
Score = 33.4 bits (77), Expect = 0.071
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60
AV P AG G RF +PK+ L + RP++++ ++ L D V V
Sbjct: 2 AVIPAAGRGTRF---GSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVV 49
>gnl|CDD|172834 PRK14358, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 481
Score = 32.3 bits (73), Expect = 0.16
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRG 63
AG G R + +PK + + RP++ + ++ A + G V VTG G
Sbjct: 15 AGQGTR---MKSALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHG 60
>gnl|CDD|163336 TIGR03584, PseF, pseudaminic acid CMP-transferase. The sequences
in this family include the pfam02348
(cytidyltransferase) domain and are homologous to the
NeuA protein responsible for the transfer of CMP to
neuraminic acid. According to, this gene is responsible
for the transfer of CMP to the structurally related
sugar, pseudaminic acid which is observed as a
component of sugar modifications of flagellin in
Campylobacter species. This gene is commonly observed
in apparent operons with other genes responsible for
the biosynthesis of pseudaminic acid and as a component
of flagellar and exopolysaccharide biosynthesis loci.
Length = 222
Score = 31.1 bits (71), Expect = 0.37
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 25 SKVIP-KEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60
SK IP K + +P+I Y IE AL +GL D V V+
Sbjct: 10 SKRIPRKNIKPFCGKPMIAYSIEAALNSGLFDKVVVS 46
>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family
of proteins found in this equivalog include the
characterized LysX from Thermus thermophilus which is
part of a well-organized lysine biosynthesis gene
cluster. LysX is believed to carry out an ATP-dependent
acylation of the amino group of alpha-aminoadipate in
the prokaryotic version of the fungal AAA lysine
biosynthesis pathway. No species having a sequence in
this equivalog contains the elements of the more common
diaminopimelate lysine biosythesis pathway, and none has
been shown to be a lysine auxotroph. These sequences
have mainly recieved the name of the related enzyme,
"ribosomal protein S6 modification protein RimK". RimK
has been characterized in E. coli, and acts by
ATP-dependent condensation of S6 with glutamate
residues.
Length = 280
Score = 30.4 bits (69), Expect = 0.62
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 186 DHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKG----EIQLTDS 241
H++F+I + I KP I F I I I+ N W+ N +G L +
Sbjct: 161 QHKLFYIQEYINKPGRD--IRVFVIGDEAIAA--IYRYSNHWRTNTARGGKAEPCPLDEE 216
Query: 242 MRKLSER 248
+ +L+ +
Sbjct: 217 VEELAVK 223
>gnl|CDD|181813 PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate
cytidylyltransferase/2-C-methyl-D-erythritol
2,4-cyclodiphosphate synthase protein; Provisional.
Length = 378
Score = 30.2 bits (69), Expect = 0.64
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60
AG RF S + K+ L I +P+ +V+E A + V
Sbjct: 13 AGRSTRF---SAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVV 55
>gnl|CDD|179510 PRK02947, PRK02947, hypothetical protein; Provisional.
Length = 246
Score = 29.8 bits (68), Expect = 0.79
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTG 61
AV I GL P+S V+ A + + V E +E G+T VF++
Sbjct: 175 AVLEIPGLEAPVGPVSTVVG----AAILNAIFAEVAERLVERGITPPVFLSA 222
>gnl|CDD|184007 PRK13368, PRK13368, 3-deoxy-manno-octulosonate
cytidylyltransferase; Provisional.
Length = 238
Score = 29.5 bits (67), Expect = 1.1
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 30 KEMLAIVDRPVIQYVIEEALEAGLTDFVFV 59
K +L I+ +P+IQ+V E A +A + V+V
Sbjct: 19 KPLLDILGKPMIQHVYERAAQAAGVEEVYV 48
>gnl|CDD|180091 PRK05450, PRK05450, 3-deoxy-manno-octulosonate
cytidylyltransferase; Provisional.
Length = 245
Score = 28.9 bits (66), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 29 PKEMLA-IVDRPVIQYVIEEALEAGLTDFVFVT 60
P + LA I +P+I V E A +AG V T
Sbjct: 17 PGKPLADIGGKPMIVRVYERASKAGADRVVVAT 49
>gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase.
Length = 608
Score = 28.2 bits (63), Expect = 2.3
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 45 IEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSL 81
I+E +E G + +FV R GLI FD Q L+Q L
Sbjct: 561 IDEIVEIGYLNGLFVLARSIGLIGHTFD-QKRLKQPL 596
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The E1 ortholog from Corynebacterium glutamicum is
unusual in having an N-terminal extension that resembles
the dihydrolipoamide succinyltransferase (E2) component
of 2-oxoglutarate dehydrogenase.
Length = 929
Score = 27.9 bits (62), Expect = 2.9
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 181 VGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWK 228
+ K I +FH++ + P++ F + + R D+F L ++
Sbjct: 405 LAKMIQAPIFHVNA--DDPEAVAFATRLAVEYRNTFKRDVFIDLVGYR 450
>gnl|CDD|178105 PLN02487, PLN02487, zeta-carotene desaturase.
Length = 569
Score = 27.1 bits (60), Expect = 5.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 198 KPDSSTFISNFFINGRY 214
+PD T ISNFF+ G Y
Sbjct: 510 RPDQKTPISNFFLAGSY 526
>gnl|CDD|180308 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 27.1 bits (60), Expect = 6.2
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 26 KVIPKEML-AIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRKR 84
K + KE L + IE L +FV + R K + F+ + L + +
Sbjct: 305 KKLSKEQLKTLNLEKQKLLSIEFNTNFLLNNFVSLINRLKASVNQVFEFEIYLYKIINAN 364
Query: 85 NKKAE 89
K E
Sbjct: 365 PDKLE 369
>gnl|CDD|132317 TIGR03274, methan_mark_7, putative methanogenesis marker protein 7.
Members of this protein family, to date, are found in a
completed prokaryotic genome if and only if the species
is one of the archaeal methanogens. The exact function
is unknown, but likely is linked to methanogenesis or a
process closely connected to it.
Length = 302
Score = 27.0 bits (60), Expect = 6.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 232 GKGEIQLTDSMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANI 274
G+ QL+D R+L E HD + F G+ DC KK + +I
Sbjct: 112 GRRIAQLSDEERRLIEEHDLAIFVF-GNFEDCIKKKMPLFRDI 153
>gnl|CDD|131779 TIGR02732, zeta_caro_desat, carotene 7,8-desaturase. Carotene
7,8-desaturase, also called zeta-carotene desaturase,
catalyzes multiple steps in the pathway from
geranylgeranyl-PP to all-trans-lycopene in plants and
cyanobacteria. A similar enzyme and pathway is found in
the green sulfur bacterium Chlorobium tepidum.
Length = 474
Score = 26.7 bits (59), Expect = 7.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 198 KPDSSTFISNFFINGRY 214
+PD T ISNFF+ G Y
Sbjct: 434 RPDQKTPISNFFLAGSY 450
>gnl|CDD|181867 PRK09451, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 456
Score = 26.5 bits (59), Expect = 8.6
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 30/104 (28%)
Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQ 74
AG G R + +PK + + +P++Q+VI+ A E G V G G L+K
Sbjct: 13 AGKGTRMY---SDLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQ----- 64
Query: 75 FELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAV 118
TL E + N V Q E+ G GHA+
Sbjct: 65 ----------------TLADEPL----NWVL--QAEQLGTGHAM 86
>gnl|CDD|178682 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like;
Provisional.
Length = 1195
Score = 26.4 bits (58), Expect = 9.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 140 SPLE-GENCMANMIKLYEKEGANIL-AVSECDPQLSCK 175
SP+ G N MA+ ++ E N+L VS C+ ++ C+
Sbjct: 804 SPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCR 841
>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional.
Length = 391
Score = 26.2 bits (58), Expect = 10.0
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 231 EGKGEIQLTDSMRKLSERHDFLAYHFKGHT 260
+G+ E DS+ + E D + F+ T
Sbjct: 114 DGQVETIFDDSIATIDEHRDGVRVTFERGT 143
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.139 0.414
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,974,977
Number of extensions: 324956
Number of successful extensions: 652
Number of sequences better than 10.0: 1
Number of HSP's gapped: 637
Number of HSP's successfully gapped: 40
Length of query: 299
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 206
Effective length of database: 3,984,929
Effective search space: 820895374
Effective search space used: 820895374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)