RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] (299 letters) >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Length = 281 Score = 188 bits (479), Expect = 1e-48 Identities = 109/274 (39%), Positives = 163/274 (59%), Gaps = 3/274 (1%) Query: 7 VRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGL 66 ++K +FP AG G RF PI+K IPKEML IVD+P+IQY +EEA+EAG VTGR K Sbjct: 2 IKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRS 61 Query: 67 IKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG 126 ++DYFD +E+E ++ NK+ +I + Q + KGLGHA+ +IG Sbjct: 62 LEDYFDTSYEIEHQIQGTNKE-NALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIG 120 Query: 127 DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAID 186 + PFA++L D + + + + M LY+K +I+A+ E + KYG+++ + Sbjct: 121 NEPFAVILADDLCISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEEVSKYGVIRGEWLEE 180 Query: 187 HQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLS 246 + I DM+EKP+ SN + GRYIL PDIF IL++ K + EIQ+TD++R + Sbjct: 181 GV-YEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKN-NEIQITDALRTQA 238 Query: 247 ERHDFLAYHFKGHTYDCGSKKGFVLANIAFALAR 280 +R +AY FKG YDCGS +G++ A+ A+ R Sbjct: 239 KRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKKR 272 >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Length = 297 Score = 168 bits (426), Expect = 1e-42 Identities = 116/293 (39%), Positives = 164/293 (55%), Gaps = 6/293 (2%) Query: 3 SLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGR 62 ++K +RKAVFP+AGLG RF P +K +PKEML +VDRP+IQY ++EA+EAG+ +FVTGR Sbjct: 10 TIKPLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGR 69 Query: 63 GKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCAR 122 GK ++D+FDI +ELE ++ R K + +L + GN + Q E GLGHAVWCAR Sbjct: 70 GKSALEDHFDIAYELEATMAARGKSLD--VLDGTRLKPGNIAYVRQQEPMGLGHAVWCAR 127 Query: 123 NIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVG 182 +I+GD PFA+LLPD M G +E P + Sbjct: 128 DIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGGNLIC---AEEVPDDQTHRYGIITP 184 Query: 183 KAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSM 242 D + + ++EKP T SN + GRYIL P++ I + + GEIQLTD+M Sbjct: 185 GTQDGVLTEVKGLVEKPAPGTAPSNLSVIGRYILQPEVMRI-LENQGKGAGGEIQLTDAM 243 Query: 243 RKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETDLKTLV 295 +++ F F+G YDCG K GF+ AN+A AL+R D+ + + Sbjct: 244 QRMIGDQPFHGVTFQGTRYDCGDKAGFIQANLAVALSRPDLEPAVRAFAVKAL 296 >2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Length = 302 Score = 153 bits (386), Expect = 5e-38 Identities = 105/291 (36%), Positives = 161/291 (55%), Gaps = 4/291 (1%) Query: 5 KKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64 KV+KAV P+AGLG R P +K IPKEML +VD+P+IQYV+ E + AG+T+ V VT K Sbjct: 6 TKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSK 65 Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNI 124 I+++FD FELE L KR K+ L + P + Q KGLGHAV CA + Sbjct: 66 NSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPV 125 Query: 125 IGDNPFALLLPDMIMSPLEGENCMAN---MIKLYEKEGANILAVSECDPQLSCKYGMVQV 181 +GD P A++LPD+I+ E + N MI+ +++ G + + V + + Sbjct: 126 VGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMVEPVADVTAYGVVDCKG 185 Query: 182 GKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDS 241 + + + ++EKP + SN I GRY+L DI+ +L G EIQLTD+ Sbjct: 186 VELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGD-EIQLTDA 244 Query: 242 MRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETDLK 292 + L E+ AYH KG ++DCG+K G++ A + + + + ++ + L+ Sbjct: 245 IDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGTEFKAWLE 295 >2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 323 Score = 140 bits (353), Expect = 3e-34 Identities = 81/296 (27%), Positives = 130/296 (43%), Gaps = 3/296 (1%) Query: 5 KKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64 V+ V P AGLG RF P +K +PKE+L +VD P I+ + EA E G T +T K Sbjct: 10 NAVKTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITAPNK 69 Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNI 124 + +F+ ELE++L +R K + + + AV Q + GLGHAV A ++ Sbjct: 70 AGVLAHFERSSELEETLMERGKTDQ-VEIIRRAADLIKAVPVTQDKPLGLGHAVGLAESV 128 Query: 125 IGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKA 184 + D+ + + L E G+ + AV + +S Sbjct: 129 LDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGGSVLCAVEVSEADVSKYGIFEIEADT 188 Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRK 244 D V + M+EKP S GRY+L IF L G E+QLTD++ Sbjct: 189 KDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKIFDALRRITPGAGG-ELQLTDAIDL 247 Query: 245 L-SERHDFLAYHFKGHTYDCGSKKGFVLANIAFALARQDIRSDIETDLKTLVSALK 299 L E H +G +D G+ G++ A + F L+ + ++ +K +++ + Sbjct: 248 LIDEGHPVHIVIHQGKRHDLGNPGGYIPACVDFGLSHPVYGAQLKDAIKQILAEHE 303 >1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296 Score = 128 bits (323), Expect = 2e-30 Identities = 54/269 (20%), Positives = 96/269 (35%), Gaps = 40/269 (14%) Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTG-RGKGLI 67 K + G G R PI++ + K++L I D+P+I Y + + AG+ + + +T KG Sbjct: 5 KGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLAGIREILIITTPEDKGYF 64 Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127 + E L + Q GL A + Sbjct: 65 QRLLGDGSEFGIQLE----------------------YAEQPSPDGLAQAFIIGETFLNG 102 Query: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEK-EGANILAVSECDPQLSCKYGMVQVGKAID 186 P L+L D I G+ + + + EGA + DP+ ++G+V+ Sbjct: 103 EPSCLVLGDNI---FFGQGFSPKLRHVAARTEGATVFGYQVMDPE---RFGVVEFDDN-- 154 Query: 187 HQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLS 246 F + EKP SN+ + G Y + K +E +GE+++T + Sbjct: 155 ---FRAISLEEKPKQ--PKSNWAVTGLYFYDSKVVEYAKQVKPSE-RGELEITSINQMYL 208 Query: 247 ERHDFLAYHFKGHTY--DCGSKKGFVLAN 273 E + D G+ + A+ Sbjct: 209 EAGNLTVELLGRGFAWLDTGTHDSLIEAS 237 >3hl3_A Glucose-1-phosphate thymidylyltransferase; IDP01254, sucrose, structural genomics, center for structural genomics of infectious diseases; HET: SUC; 2.76A {Bacillus anthracis} Length = 269 Score = 121 bits (303), Expect = 2e-28 Identities = 48/269 (17%), Positives = 96/269 (35%), Gaps = 36/269 (13%) Query: 5 KKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64 K + G G R +PI+KV K +L + P+I + + + + +TD + +TG+ Sbjct: 22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEH 81 Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNI 124 F + + Q + G+ A+ + Sbjct: 82 MGDVVSFLGSG---------------------QEFGVSFTYRVQDKAGGIAQALGLCEDF 120 Query: 125 IGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKA 184 +G++ ++L D I S + + + ++ + + D +Q K Sbjct: 121 VGNDRMVVILGDNIFSD----DIRPYVEEFTNQKEGAKVLLQSVDDPERFGVANIQNRK- 175 Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRK 244 I ++ EKP S++ + G Y+ +FS + + K + GE+++TD Sbjct: 176 -------IIEIEEKPK--EPKSSYAVTGIYLYDSKVFSYIKELKPSAR-GELEITDINNW 225 Query: 245 LSERHDFLAYHFKGHTYDCGSKKGFVLAN 273 +R G D G+ AN Sbjct: 226 YLKRGVLTYNEMSGWWTDAGTHVSLQRAN 254 >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold, structural genomics, PSI; HET: TYD; 1.70A {Methanothermobacterthermautotrophicus} SCOP: c.68.1.6 Length = 295 Score = 108 bits (271), Expect = 2e-24 Identities = 53/269 (19%), Positives = 103/269 (38%), Gaps = 38/269 (14%) Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTG-RGKGLI 67 K + G G R +PI++ + K++L I D+P+I Y + + AG+ D + ++ R L Sbjct: 5 KGIVLAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSVLMLAGIRDILIISTPRDLPLY 64 Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127 +D + + Q E +G+ A ++ IGD Sbjct: 65 RDLLGDGSQFGVRFS----------------------YRVQEEPRGIADAFIVGKDFIGD 102 Query: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDH 187 + AL+L D + + L ++GA I DP+ +G+V+ + Sbjct: 103 SKVALVLGDNVFYGHRFSEILRRAASL--EDGAVIFGYYVRDPR---PFGVVEFDS--EG 155 Query: 188 QVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE 247 +V I + +P SN+ + G Y + I + ++ +GE+++T + Sbjct: 156 RVISIEEKPSRP-----KSNYVVPGLYFYDNQVVEIARRIEPSD-RGELEITSVNEEYLR 209 Query: 248 RHDFLAYHFK--GHTYDCGSKKGFVLANI 274 D G+ G + A+ Sbjct: 210 MGKLRVELMGRGMAWLDTGTHDGLLEASS 238 >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 1mp5_A* 1mp3_A* 1mp4_A* Length = 293 Score = 106 bits (265), Expect = 6e-24 Identities = 52/270 (19%), Positives = 99/270 (36%), Gaps = 38/270 (14%) Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKG-L 66 RK + G G R P + I K++L + D+P+I Y + + AG+ + + ++ Sbjct: 3 RKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDTPR 62 Query: 67 IKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG 126 + L+ + Q GL A + IG Sbjct: 63 FQQLLGDGSNWGLDLQ----------------------YAVQPSPDGLAQAFLIGESFIG 100 Query: 127 DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAID 186 ++ AL+L D + + + + + + GA++ A DP+ +YG+V+ Sbjct: 101 NDLSALVLGDNLYYGHDFHELLGSASQR--QTGASVFAYHVLDPE---RYGVVEFD--QG 153 Query: 187 HQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLS 246 + + + +P SN+ + G Y + I D K + +GE+++TD R Sbjct: 154 GKAISLEEKPLEP-----KSNYAVTGLYFYDQQVVDIARDLKPSP-RGELEITDVNRAYL 207 Query: 247 ERHDFLAYHFK--GHTYDCGSKKGFVLANI 274 ER D G+ + A Sbjct: 208 ERGQLSVEIMGRGYAWLDTGTHDSLLEAGQ 237 >1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 Score = 89.0 bits (219), Expect = 1e-18 Identities = 36/288 (12%), Positives = 83/288 (28%), Gaps = 23/288 (7%) Query: 3 SLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIV-DRPVIQYVIEEALEAGLTDFVFVTG 61 + + G G R +P++K K + + + +I + L + ++ +T Sbjct: 16 DASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQ 75 Query: 62 RGKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCA 121 + + + K E+ +S +G AV Sbjct: 76 FNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--------ENPDWFQGTADAVRQY 127 Query: 122 RNIIGDNPFA--LLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMV 179 + ++ L+L + ++ E + + L + E + Sbjct: 128 LWLFEEHTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKID 187 Query: 180 QVGKAIDHQ-----------VFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWK 228 + G+ I+ + + + + G Y++ D+ L K Sbjct: 188 EEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDK 247 Query: 229 ENEGKGEIQLTDSMRKLSERHDFLAYHFKGHTYDCGSKKGFVLANIAF 276 + S AY + G+ D G+ + F AN+ Sbjct: 248 FPGAN-DFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGI 294 >1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 Score = 88.2 bits (217), Expect = 2e-18 Identities = 41/266 (15%), Positives = 86/266 (32%), Gaps = 23/266 (8%) Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLI 67 KAV GLG R + V PK M+ I +P++ ++++ G+ DF+ G +I Sbjct: 3 SKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62 Query: 68 KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGD 127 K+YF F S + + N + G + + D Sbjct: 63 KEYFANYFL-HMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVKD 121 Query: 128 NPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDH 187 + L ++ L+ + + A+D Sbjct: 122 DEAFLFTYGDGVADLDIKATIDFHKA-------------HGKKATLTATFPPGRFGALDI 168 Query: 188 QVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSE 247 Q + EKP G ++L+P + ++++ + + + L++ Sbjct: 169 QAGQVRSFQEKPKGDGA---MINGGFFVLNPSVIDLIDNDATTWEQ------EPLMTLAQ 219 Query: 248 RHDFLAYHFKGHTYDCGSKKGFVLAN 273 + + +A+ G + + V Sbjct: 220 QGELMAFEHPGFWQPMDTLRDKVYLE 245 >3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 Score = 87.7 bits (216), Expect = 3e-18 Identities = 35/285 (12%), Positives = 82/285 (28%), Gaps = 28/285 (9%) Query: 4 LKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRP-VIQYVIEEALEAGLTDFVFVTGR 62 L + A G G R ++ K + + +I + + AL +G+ T Sbjct: 9 LARDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQY 68 Query: 63 GKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCAR 122 + + ++ + R + + + +G AV+ Sbjct: 69 KAHSLIRHLQRGWDFFRPERNESFD----------ILPASQRVSETQWYEGTADAVYQNI 118 Query: 123 NII--GDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQ 180 +II + ++L + ++ E + + L V + +G++ Sbjct: 119 DIIEPYAPEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEA---TGFGVMH 175 Query: 181 VGKAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPD-IFSILNDWKENEGKGEIQLT 239 V + + F G Y+ H + + + Sbjct: 176 VNEKDEIIDFIEKPADPPGIPGNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGK 235 Query: 240 DSMRKLSERHDFLAYHF-----------KGHTYDCGSKKGFVLAN 273 D + + E +A+ F + + D G+ + AN Sbjct: 236 DIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQAN 280 >2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 Score = 85.0 bits (209), Expect = 2e-17 Identities = 52/258 (20%), Positives = 100/258 (38%), Gaps = 47/258 (18%) Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68 KA AG G R PI+ PK + I+ +P+I+Y IE + G+ D + K Sbjct: 2 KAFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGIRDITVIVSSKN---K 58 Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDN 128 +YF E+ L++ + ++ + + ++ Sbjct: 59 EYF------EKKLKE---------------------ISIVTQKDDIKGTGAAILSAKFND 91 Query: 129 PFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQ 188 ++ D+ S + + + I+ V +P+ + Sbjct: 92 EALIIYGDLFFS------NEKEICNIITLKENAIIGVKVSNPKDYG--------VLVLDN 137 Query: 189 VFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSER 248 ++S +IEKP+ SN G Y L+ DIF+ L+ +E GE++LTD++ +++ Sbjct: 138 QNNLSKIIEKPEIP--PSNLINAGIYKLNSDIFTYLDKISISER-GELELTDAINLMAKD 194 Query: 249 HDFLAYHFKGHTYDCGSK 266 H ++G+ D G Sbjct: 195 HRVKVIEYEGYWMDIGKP 212 >2x65_A Mannose-1-phosphate guanylyltransferase; GDP-mannose biosynthesis, nucleotidyltransferas; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* Length = 336 Score = 82.9 bits (204), Expect = 7e-17 Identities = 46/258 (17%), Positives = 93/258 (36%), Gaps = 33/258 (12%) Query: 9 KAVFPIAGLGMRFFPIS-KVIPKEMLAIV-DRPVIQYVIEEALE-AGLTDFVFVTGRGKG 65 KA+ G G RF+P+S PK+ L + ++ ++++ E LE D + VT Sbjct: 3 KALILAGGSGERFWPLSTPETPKQFLKLFGNKSLMRWTFERVLEEMDPKDVIVVTH---- 58 Query: 66 LIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNII 125 KDY + + +P + + + +K A + + Sbjct: 59 --KDYVERT-------------------KKELPELPDENIIAEPMKKNTAPACFIGTKLA 97 Query: 126 GDNPFALLLP-DMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKA 184 D+ L+LP D + + ++ + + YG +++G+ Sbjct: 98 DDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPETGYGYIEIGEE 157 Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRK 244 ++ V ++ EKPD T F +GR++ + +F E K S+ + Sbjct: 158 LEEGVHKVAQFREKPDLET-AKKFVESGRFLWNSGMFLWKAREFIEEVK---VCEPSIYE 213 Query: 245 LSERHDFLAYHFKGHTYD 262 + D + Y+ Sbjct: 214 NLKDVDPRNFEELKKAYE 231 >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* Length = 456 Score = 82.7 bits (203), Expect = 8e-17 Identities = 49/261 (18%), Positives = 86/261 (32%), Gaps = 39/261 (14%) Query: 5 KKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64 KK AV AG G R + +PK + I +P++++VI+ A + G + + G G Sbjct: 3 KKALSAVILAAGKGTRMYSD---LPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGG 59 Query: 65 GLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNI 124 L++ + + + Q E+ G HAV A Sbjct: 60 DLMRTHL---------------------------ANEQVNWVLQTEQLGTAHAVQQAAPF 92 Query: 125 IGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKA 184 DN ++L L + + +I+ + G +L V+ +P YG + Sbjct: 93 FKDNENIVVLYGDAP--LITKETLEKLIEAKPENGIALLTVNLDNPT---GYGRIIRE-- 145 Query: 185 IDHQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRK 244 + V I + + I L N +GE LTD + Sbjct: 146 -NGNVVAIVEQKDANAEQLNIKEVNTGVMVSDGASFKKWLARVGNNNAQGEYYLTDLIAL 204 Query: 245 LSER-HDFLAYHFKGHTYDCG 264 ++ +A G Sbjct: 205 ANQDNCQVVAVQATDVMEVEG 225 >1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransferase; acetyltransferase, bifunctional, crystallography, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 1g97_A* 1g95_A* Length = 468 Score = 77.4 bits (189), Expect = 4e-15 Identities = 31/222 (13%), Positives = 61/222 (27%), Gaps = 31/222 (13%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69 A+ AG G R +PK + + ++++V V V G L+++ Sbjct: 14 AIILAAGKGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAELVEE 70 Query: 70 YFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNP 129 G F Q E+ G GHAV I+ Sbjct: 71 VLA----------------------------GQTEFVTQSEQLGTGHAVMMTEPILEGLS 102 Query: 130 FALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQV 189 L+ + GE+ + + + +E D + + V Sbjct: 103 GHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRNDNAEVLRIV 162 Query: 190 FHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENE 231 + + ++ L + +I + + E Sbjct: 163 EQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTNNAQGE 204 >1hv9_A UDP-N-acetylglucosamine pyrophosphorylase; LEFT-handed parallel beta-helix, transferase; HET: COA UD1; 2.10A {Escherichia coli} SCOP: b.81.1.4 c.68.1.5 PDB: 2oi5_A* 2oi6_A* 2oi7_A* 3fww_A 1fxj_A* 1fwy_A* Length = 456 Score = 72.8 bits (177), Expect = 8e-14 Identities = 44/256 (17%), Positives = 77/256 (30%), Gaps = 38/256 (14%) Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68 V AG G R + +PK + + + ++Q+VI+ A E G V G G L+K Sbjct: 7 SVVILAAGKGTRMYSD---LPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLK 63 Query: 69 DYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDN 128 N + Q E+ G GHA+ A D+ Sbjct: 64 QAL---------------------------KDDNLNWVLQAEQLGTGHAMQQAAPFFADD 96 Query: 129 PFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQ 188 L+L + + + + G +L V DP + + Sbjct: 97 EDILMLYGDVPL--ISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGK--VTGI 152 Query: 189 VFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSER 248 V H E+ + I + + + N N +GE +TD + + Sbjct: 153 VEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTN----NNAQGEYYITDIIALAYQE 208 Query: 249 HDFLAYHFKGHTYDCG 264 + + Sbjct: 209 GREIVAVHPQRLSEVE 224 >3dk5_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann-like fold, LEFT-handed-beta-helix, trimer, cell shape; 2.23A {Mycobacterium tuberculosis} PDB: 3d8v_A 3d98_A* 3dj4_A 3foq_A 2qkx_A* Length = 495 Score = 68.6 bits (166), Expect = 2e-12 Identities = 43/250 (17%), Positives = 80/250 (32%), Gaps = 27/250 (10%) Query: 15 AGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQ 74 AG G R PK + + R ++ +V+ + + V G I Sbjct: 14 AGPGTRMRSD---TPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVG-- 68 Query: 75 FELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLL 134 EL +L + Q G GHAV C + + D+ ++ Sbjct: 69 -ELADTLGR------------------TIDVALQDRPLGTGHAVLCGLSALPDDYAGNVV 109 Query: 135 PDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQVFHISD 194 +PL + +A++I + A + + L +G ++ + DH+V I + Sbjct: 110 VTSGDTPLLDADTLADLIATHRAVSAAV---TVLTTTLDDPFGYGRILRTQDHEVMAIVE 166 Query: 195 MIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLTDSMRKLSERHDFLAY 254 + S I + S L+ N + E+ LTD + L + Sbjct: 167 QTDATPSQREIREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHA 226 Query: 255 HFKGHTYDCG 264 + Sbjct: 227 SHVDDSALVA 236 >1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 Score = 65.3 bits (158), Expect = 2e-11 Identities = 35/276 (12%), Positives = 85/276 (30%), Gaps = 55/276 (19%) Query: 4 LKKVR-KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGR 62 +K++R KA+ AGLG R P+++ PK ++ + +P+I+Y IE E G+ D + + G Sbjct: 21 MKEIRVKAIILAAGLGTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGY 80 Query: 63 GKGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCAR 122 K + + + Sbjct: 81 LKEQFDYLKEKY------------------------GVRLVFNDKYADYNNFYSLYLVKE 116 Query: 123 NIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVG 182 + ++ +N + + + + +V D + G Sbjct: 117 EL------------ANSYVIDADNYLFKNMFRNDLTRSTYFSVYREDCT---NEWFLVYG 161 Query: 183 KAIDHQVFHISDMIEKPDSSTFISNFFINGRYILHPD----IFSILNDWKENEGKGEIQL 238 + + D+I + ++G I S ++ + ++ Sbjct: 162 DD-----YKVQDIIVDSK-----AGRILSGVSFWDAPTAEKIVSFIDKAYVSGEFVDLYW 211 Query: 239 TDSMRKLSERHDFLAYHFKGHT-YDCGSKKGFVLAN 273 + ++ + D +G++ Y+ S + + Sbjct: 212 DNMVKDNIKELDVYVEELEGNSIYEIDSVQDYRKLE 247 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 43.0 bits (101), Expect = 8e-05 Identities = 70/336 (20%), Positives = 107/336 (31%), Gaps = 142/336 (42%) Query: 29 PKEMLAIVDRPV---------IQYVIEEA-----------LEAGLTDFV--FVTGRG--- 63 P E A D P + YV L LT+F ++ G Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103 Query: 64 ----------------KGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGN----A 103 K LIK+Y + ++ K++ A L ++ GN A Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA----LFRAVGE-GNAQLVA 158 Query: 104 VFTWQ-----Y--ERKGLGHAVWCARNIIGD--NPFALLLPDMIMSPLEGENCMANMIKL 154 +F Q Y E + L + + ++GD A L ++I + L+ E K+ Sbjct: 159 IFGGQGNTDDYFEELRDL-YQTY--HVLVGDLIKFSAETLSELIRTTLDAE-------KV 208 Query: 155 YEKEGANILA------------------VSECDP-----QL-----SCKY-GMVQVGKAI 185 + + G NIL +S C P QL + K G G+ Sbjct: 209 FTQ-GLNILEWLENPSNTPDKDYLLSIPIS-C-PLIGVIQLAHYVVTAKLLGF-TPGELR 264 Query: 186 DHQVF-----H-----ISDMIEKPDS-STFISN--------FFING--------RYILHP 218 + H + I + DS +F + FFI G L P Sbjct: 265 SY--LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-GVRCYEAYPNTSLPP 321 Query: 219 DIFSILNDWKEN-EGKGEIQLTDSMRKLS----ERH 249 SIL D EN EG L S+ L+ + + Sbjct: 322 ---SILEDSLENNEGVPSPML--SISNLTQEQVQDY 352 Score = 42.2 bits (99), Expect = 1e-04 Identities = 57/328 (17%), Positives = 98/328 (29%), Gaps = 150/328 (45%) Query: 12 FPIAGLG--MRFFPISKVI---PKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGL 66 P+ G+ + +K++ P E+ L+ TG +GL Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELR-------------SYLKG-------ATGHSQGL 277 Query: 67 I-------KDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVW 119 + D ++ F +KA +T+L F + Sbjct: 278 VTAVAIAETDSWE-SFF-VSV-----RKA-ITVL-----------F-------------F 305 Query: 120 CARNIIG-----DNPFALLLPDMIMSPLE-GE---NCMANMIKLYEKEGANILAVSECDP 170 IG P L P ++ LE E + M L++S Sbjct: 306 -----IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--------------LSISNL-T 345 Query: 171 QLSCKYGMVQVGKAIDH---------QVFHISDMIEKPDSSTFISNFFINGRYILHPDIF 221 Q QV ++ QV IS ++ N ++G P Sbjct: 346 Q-------EQVQDYVNKTNSHLPAGKQV-EIS-LVNGAK------NLVVSG----PPQ-- 384 Query: 222 SI--LNDW----KENEGKGEIQLTDSMRKLSERHDFL----AYHFKGHTYDCGSKKGFVL 271 S+ LN K G + ++ S RKL + FL +H H L Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH--SH-L---------L 432 Query: 272 ANIAFALARQDI-RSDIE---TDLKTLV 295 A L +D+ ++++ D++ V Sbjct: 433 VP-ASDLINKDLVKNNVSFNAKDIQIPV 459 Score = 34.1 bits (78), Expect = 0.039 Identities = 22/133 (16%), Positives = 30/133 (22%), Gaps = 78/133 (58%) Query: 8 RKAVFPIAGLGMRFFPIS-------------KV----------IPKEMLAIVDRPV---- 40 RK F RF P++ + + + I PV Sbjct: 412 RKLKF-----SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI---PVYDTF 463 Query: 41 ----------------IQYVI------EEALEAGLT---DFVFVTGRG--KGLIKDYFDI 73 + +I E + T DF G G GL Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF----GPGGASGL------- 512 Query: 74 QFELEQSLRKRNK 86 L RNK Sbjct: 513 -----GVLTHRNK 520 >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} Length = 246 Score = 41.1 bits (95), Expect = 3e-04 Identities = 20/156 (12%), Positives = 49/156 (31%), Gaps = 21/156 (13%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69 A G G R + +PK+ L + +P+I + +E+ + D + ++ K+ Sbjct: 6 AQILAGGKGTRMG--NVSMPKQFLPLNGKPIIVHTVEKFILNTRFDKILISSP-----KE 58 Query: 70 YFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNP 129 + + + + ++ + + +I N + V + D+ Sbjct: 59 WMNHAEDNIKKYISDDRIVVIEGGEDRNETIMNGI-----------RFVEKTYGLTDDDI 107 Query: 130 FALLLPDMIMSPLEGENCMANMIKLYEKEGANILAV 165 P + I + GA + Sbjct: 108 IVTHDAVR---PFLTHRIIEENIDAALETGAVDTVI 140 >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Length = 236 Score = 37.0 bits (84), Expect = 0.005 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFV 57 A G G R +PK+ L + DRP++ + IE+ + + + Sbjct: 5 AGILAGGTGTRMG--ISNLPKQFLELGDRPILIHTIEKFVLEPSIEKI 50 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 36.1 bits (82), Expect = 0.009 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 5/28 (17%) Query: 78 EQSLRKRNKKAELTLLA-ESIPSIGNAV 104 +Q+L+K +A L L A +S P++ A+ Sbjct: 19 KQALKKL--QASLKLYADDSAPAL--AI 42 Score = 30.4 bits (67), Expect = 0.54 Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 9/27 (33%) Query: 152 IKLYEKEGANILAVSECDPQLSCKYGM 178 +KLY + A P L+ K M Sbjct: 29 LKLYADDSA---------PALAIKATM 46 >2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.90A {Thermus thermophilus HB8} SCOP: c.68.1.19 Length = 232 Score = 36.0 bits (82), Expect = 0.011 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 8 RKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTG 61 A+ G V K ++ RP++++V+E AGL+ Sbjct: 3 PSAIVLAGGKEAWAERFG-VGSKALVPYRGRPMVEWVLEALYAAGLSPVYVGEN 55 >1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TM1393, structural genomics, JCSG, joint center for structural genomics, PSI; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Length = 234 Score = 35.8 bits (81), Expect = 0.011 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%) Query: 1 MGSLKKVRK------AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLT 54 MGS K A+ AG G R S+ +PK+ L I R + +Y + L++ Sbjct: 1 MGSDKIXXXXXXMNVAILLAAGKGERM---SENVPKQFLEIEGRMLFEYPLSTFLKSEAI 57 Query: 55 D 55 D Sbjct: 58 D 58 >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori 26695} Length = 308 Score = 35.3 bits (80), Expect = 0.018 Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 31/225 (13%) Query: 9 KAVFPIAGLGMRFFPIS-KVIPKEMLAIVD-RPVIQYVIEEALEAGLTDFVFVTGRGKGL 66 K + G G R +P+S + PK+ L + D + + + + R L Sbjct: 6 KNILLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFK---------------RNASL 50 Query: 67 IKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIG 126 + + + N+K L E I N + E A A + + Sbjct: 51 VDETLIVC----------NEKHYFLALEEIKNEIKNKSVGFLLESLSKNTANAIALSALM 100 Query: 127 DNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAID 186 + LL+ ++ N IK V+ + G Sbjct: 101 SDKEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKPNT---EFGYIES 157 Query: 187 HQVFHISDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENE 231 + IEKP I F +G + + +F +E Sbjct: 158 PNGLDVKRFIEKPSLDKAI-EFQKSGGFYFNSGMFVFQAGVFLDE 201 >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A Length = 228 Score = 35.3 bits (80), Expect = 0.018 Identities = 21/167 (12%), Positives = 43/167 (25%), Gaps = 29/167 (17%) Query: 4 LKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRG 63 ++K AV P K + + ++ + I A+ + D + V+ Sbjct: 1 MEKQNIAVILARQNSKGL-P-----LKNLRKMNGISLLGHTINAAISSKCFDRIIVST-- 52 Query: 64 KGLIKDYFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARN 123 D I E + + + + V A Sbjct: 53 -----DGGLIAEEAKNFGVEVVLR----------------PAELASDTASSISGVIHALE 91 Query: 124 IIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSECDP 170 IG N + L G + EK ++++ + Sbjct: 92 TIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEH 138 >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Length = 231 Score = 35.0 bits (79), Expect = 0.019 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Query: 3 SLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALE 50 SLK+ A+ P AG+G+RF PK+ + I + V+++V+ Sbjct: 2 SLKRKNIALIPAAGIGVRF---GADKPKQYVEIGSKTVLEHVLGIFER 46 >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Length = 197 Score = 34.0 bits (77), Expect = 0.042 Identities = 19/158 (12%), Positives = 41/158 (25%), Gaps = 38/158 (24%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69 + AG G RF K + I + P+I I L + V ++ Sbjct: 5 VIILAAGEGKRFGG-----DKLLAKIDNTPIIMRTIRIY--GDLEKIIIVGKYVNEMLPL 57 Query: 70 YFDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNP 129 D V + +G+ ++ D Sbjct: 58 LMDQI-----------------------------VIYNPFWNEGISTSLKLGLRFFKDYD 88 Query: 130 FALLLPDMIMSPLEGENCMANMIKLYEKEGANILAVSE 167 L+ + P + + +I ++ ++ + Sbjct: 89 AVLVALGDM--PFVTKEDVNKIINTFKPNCKAVIPTHK 124 >1w77_A 2C-methyl-D-erythritol 4-phosphate cytidylyltransferase; plantherbicide, non-mevalonate pathway, isoprenoid; HET: C5P; 2.00A {Arabidopsis thaliana} SCOP: c.68.1.13 Length = 228 Score = 33.9 bits (76), Expect = 0.042 Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%) Query: 4 LKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALE 50 ++K + G G R +PK+ + ++ +P+ Y Sbjct: 1 MEKSVSVILLAGGQGKRM---KMSMPKQYIPLLGQPIALYSFFTFSR 44 >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A Length = 197 Score = 33.8 bits (77), Expect = 0.051 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 9 KAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIK 68 V AG R PK++L D V+ ++ A +AG + G ++ Sbjct: 7 TGVVLAAGRSNRLGT-----PKQLLPYRDTTVLGATLDVARQAGFDQLILTLGGAASAVR 61 Query: 69 DYF 71 Sbjct: 62 AAM 64 >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Length = 199 Score = 33.4 bits (76), Expect = 0.056 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 5/66 (7%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69 V AG R PK++L + D ++ + A + G + + Sbjct: 8 GVVLAAGYSRRLGT-----PKQLLPLGDTTLLGATLAMARRCPFDQLIVTLGGAADEVLE 62 Query: 70 YFDIQF 75 ++ Sbjct: 63 KVELDG 68 >1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Length = 371 Score = 32.8 bits (74), Expect = 0.089 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 3/61 (4%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKD 69 + AG RF + + K+ L + + P+ Y + + VT +K Sbjct: 6 LIMLAAGNSTRF---NTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIVVTSSNITYMKK 62 Query: 70 Y 70 + Sbjct: 63 F 63 >3okr_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TB structural genomics consortium, TBSGC, tryptophan synthes 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase; 2.40A {Mycobacterium tuberculosis} Length = 231 Score = 32.7 bits (74), Expect = 0.10 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 3/42 (7%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEA 51 A+ P AG G R + +PK + + +I+ ++ L++ Sbjct: 10 AIVPAAGSGERL---AVGVPKAFYQLDGQTLIERAVDGLLDS 48 >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 Score = 32.4 bits (73), Expect = 0.13 Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 6/95 (6%) Query: 138 IMSPLEGENCMANMIKLYEKEGA-NILAVSECDPQLSCKYGMVQVGKAIDHQVFHISDMI 196 ++ + N+ ++ ++ +++ + P S H +F+IS I Sbjct: 214 VVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSDSVCEEYGLSCSDALHNLFYISGFI 273 Query: 197 EKPDSSTFISN-----FFINGRYILHPDIFSILND 226 + S+ FFIN R + ++N+ Sbjct: 274 SQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNE 308 >1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP), isoprenoid biosynthesys; HET: CTP; 1.50A {Escherichia coli K12} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 1h3m_A Length = 236 Score = 32.2 bits (72), Expect = 0.13 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 3/50 (6%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFV 59 AV P AG G R PK+ L+I ++ ++++ + L V + Sbjct: 10 AVVPAAGFGRRM---QTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVI 56 >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* Length = 262 Score = 31.9 bits (71), Expect = 0.17 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Query: 25 SKVIPKEMLA-IVDRPVIQYVIEEALEAGLTDFVFVT 60 S +P + LA I +P+IQ+V E+AL++G + + T Sbjct: 13 SSRLPGKPLADIKGKPMIQHVFEKALQSGASRVIIAT 49 >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Length = 201 Score = 31.8 bits (71), Expect = 0.18 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 6/79 (7%) Query: 1 MGSLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIEEALEAGLTDFVFVT 60 M + + V G R + K +L + +P+ Q+V +AL L+ V Sbjct: 1 MNLMTTI-TGVVLAGGKARRM----GGVDKGLLELNGKPLWQHVA-DALMTQLSHVVVNA 54 Query: 61 GRGKGLIKDYFDIQFELEQ 79 R + + + E Sbjct: 55 NRHQEIYQASGLKVIEDSL 73 >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} Length = 252 Score = 31.7 bits (71), Expect = 0.20 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Query: 25 SKVIPKEMLA-IVDRPVIQYVIEEALEAGLTDFVFVTGRGK 64 S +P + LA I +P+IQ+V E+A++AG + T + Sbjct: 13 STRLPGKPLADIGGKPMIQWVYEQAMQAGADRVIIATDDER 53 >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Length = 245 Score = 31.4 bits (70), Expect = 0.28 Identities = 26/206 (12%), Positives = 56/206 (27%), Gaps = 28/206 (13%) Query: 25 SKVIPKEMLA-IVDRPVIQYVIEEALEAGLTDFVFVTGRGKGLIKDYFDIQFELEQSLRK 83 S +P + L IV +P+IQ+V E AL+ V+V + + Sbjct: 13 SSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDPRVEQAVQA----------- 61 Query: 84 RNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNIIGDNPFALLLPDMIMSPLE 143 G + + + + + + + + L D M Sbjct: 62 ----------------FGGKAIMTRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPR 105 Query: 144 GENCMANMIKLYEKEGANILAVSECDPQLSCKYGMVQVGKAIDHQVFHISDMIEKPDSST 203 + ++ L + + + + V ++ I P ++ Sbjct: 106 DVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNAE 165 Query: 204 FISNFFINGRYILHPDIFSILNDWKE 229 G Y D+ + E Sbjct: 166 KARYLKHVGIYAYRRDVLQNYSQLPE 191 >2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Length = 236 Score = 31.1 bits (69), Expect = 0.29 Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%) Query: 10 AVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIE 46 + P AG G+R PK L + R ++++ + Sbjct: 28 VLIPAAGNGLRL----GRGPKAFLQVGGRTLLEWTLA 60 >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 Length = 229 Score = 29.9 bits (66), Expect = 0.79 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Query: 25 SKVIPKEMLA-IVDRPVIQYVIEEALEAGLTDFVFV 59 SK IP + + + P+I +V+ AL+AG+ V+V Sbjct: 14 SKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQSVWV 49 >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 1g6c_A* 1g4e_A* 1g69_A* 1g4s_A* 1g4p_A* 1g67_A* Length = 227 Score = 29.5 bits (65), Expect = 0.85 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 10/115 (8%) Query: 18 GMRFFPISKVIPKEML---AIVDRPVIQY----VIEEALEAGLTDFVFVTGRGKGLIKDY 70 G+R IS+ + KE+L I+ + V+++AL+ G T + F R KG Sbjct: 3 GIRMTRISREMMKELLSVYFIMGSNNTKADPVTVVQKALKGGATLYQF---REKGGDALT 59 Query: 71 FDIQFELEQSLRKRNKKAELTLLAESIPSIGNAVFTWQYERKGLGHAVWCARNII 125 + + + + + ++A + + + + R I Sbjct: 60 GEARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAI 114 >2e8b_A Probable molybdopterin-guanine dinucleotide biosynthesis protein A; putative protein, molybdenum cofactor, structural genomics, NPPSFA; 1.61A {Aquifex aeolicus VF5} Length = 201 Score = 28.7 bits (63), Expect = 1.6 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 5/45 (11%) Query: 2 GSLKKVRKAVFPIAGLGMRFFPISKVIPKEMLAIVDRPVIQYVIE 46 GSL KV G RF K + I + VI+ V E Sbjct: 9 GSLSKVNTCYVLAGGKSKRF-----GEDKLLYEIKGKKVIERVYE 48 >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, cytoplasm, lipopolysaccharide biosynthesis, magnesium; HET: KDO CTP; 1.90A {Escherichia coli} PDB: 3k8e_C 1vh1_A 3jtj_A* Length = 264 Score = 27.8 bits (60), Expect = 3.0 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 25 SKVIPKEMLA-IVDRPVIQYVIEEALEAGLTD 55 S +P + L I +P+I +V+E A E+G Sbjct: 29 STRLPGKPLVDINGKPMIVHVLERARESGAER 60 >3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} Length = 279 Score = 27.1 bits (59), Expect = 5.2 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%) Query: 44 VIEEALEAGLTDFVFVTGRGKGLIKDYFD 72 ++ A G+ V TGR ++ Y D Sbjct: 30 AVQAAKAQGIK-VVLCTGRPLTGVQPYLD 57 >2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, structural genomics, structural genomics consortium; 2.80A {Homo sapiens} SCOP: d.129.3.2 Length = 237 Score = 26.9 bits (59), Expect = 5.4 Identities = 12/47 (25%), Positives = 18/47 (38%) Query: 193 SDMIEKPDSSTFISNFFINGRYILHPDIFSILNDWKENEGKGEIQLT 239 ++E D T I + +N F +L WK + KG L Sbjct: 108 WKVVETLDRQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLV 154 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.323 0.139 0.414 Gapped Lambda K H 0.267 0.0534 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,634,697 Number of extensions: 125557 Number of successful extensions: 455 Number of sequences better than 10.0: 1 Number of HSP's gapped: 431 Number of HSP's successfully gapped: 66 Length of query: 299 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 207 Effective length of database: 3,462,782 Effective search space: 716795874 Effective search space used: 716795874 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.8 bits)