HHsearch alignment for GI: 254780367 and conserved domain: TIGR00766
>TIGR00766 TIGR00766 ribonuclease, putative; InterPro: IPR005274 Members of this family show similarity to ribonuclease BN and include the Escherichia coli protein YhjD is located in the inner membrane . The function of these proteins are unknown. .
Probab=99.71 E-value=1.2e-13 Score=82.58 Aligned_cols=260 Identities=13% Similarity=0.110 Sum_probs=182.6
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH----H--HHHCC-C--HHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 9999999985578768899999999999999999999----9--86317-5--678999999999733741368999999
Q gi|254780367|r 12 IYDAIEHFVEEDGWAMASHISLSALLSVFPFIVFGAN----L--AGFLG-A--HQFVPTVIDVVFGAWPEVIAKPITDEI 82 (281)
Q Consensus 12 i~~~~~~~~~~~~~~~Aaalaf~~llsl~Plli~~~~----i--~~~~~-~--~~~~~~~~~~i~~~lp~~~~~~i~~~l 82 (281)
T Consensus 3 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~~p~~~~~~~~gg~~gg~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (299)
T TIGR00766 3 LVRAGDRFNDRLGNLFGAGLTYFSFLSLIPLLLVGFGAGGFVGGLALHPRLNPPELLGLLEERVRSDVDPALGRTLKNTV 82 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 21000122112002566788999999999999875201200000334320350467888888764101226789999887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHCCCCCC-CHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 9852045741499999999999999999999999----8----630236663-0367679999-9999999999999999
Q gi|254780367|r 83 LQVLAVPAKGLFTISALAAAYFSSNGVEALRISL----N----RAYRVVEMR-SWYITRLISF-GYVLLASVTLVIMSFV 152 (281)
Q Consensus 83 ~~~~~~~~~~~~~i~~~~~l~~as~~~~~l~~~~----~----~i~~~~~~r-~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (281)
T Consensus 83 ~~~~~-~~~~~g~~g~~~~~~~g~~w~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 161 (299)
T TIGR00766 83 NTAVD-ARTTVGLVGLAVALYSGLGWLGNLREALRAQSSAQSRDVWERPPAPEEKLWLKYLWDFLSLGGLLLALVVTLAL 161 (299)
T ss_pred HHHHH-HCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66664-11112478899998762011456788875443233444430355403577889999999998899999999998
Q ss_pred HHHHH---HHHHHHHHHCCC-----CCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCHHHHHHHHH
Q ss_conf 99999---999999741465-----2107----999999999999999999999998405----7776752101221899
Q gi|254780367|r 153 FVAIP---LALAYVRKFFPA-----LGNL----LLIIWNGRIYATMLALFIGLIFVHLFL----PAAKSKIMSILPGVIF 216 (281)
Q Consensus 153 ~~~~~---~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~l~~~~~~~~~y~~~----P~~~~~~~~~~~Ga~~ 216 (281)
T Consensus 162 ~~~~~~~p~~~~~~~~~~~~~g~~w~~~~~~w~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 241 (299)
T TIGR00766 162 TSLGGARPSAQALIWLALPLNGIDWLRPSVEWLKPTWDLIGLGISVLASLLLLWWLFWWLIGRLPREPPGGKPLLRGGLL 241 (299)
T ss_pred HHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 86512332578888876145522566666776305789999999999999999999998863112221001355654577
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999986522246789999999999999999999999999999999
Q gi|254780367|r 217 TWISWVVGAVLFTHYIVTFSTYSTMYAGLASIMTCLVFLYMLGVFFILGAELNASMI 273 (281)
Q Consensus 217 a~v~~~~~~~~f~~y~~~~~~~~~~YGsl~~ii~lllWly~~~~ill~Ga~~na~l~ 273 (281)
T Consensus 242 ~~~g~~~~~~~~~~~~~~~~~-~p~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~ 297 (299)
T TIGR00766 242 AAVGFELLKFVGTVYLPELLK-SPSGAAFGPVLGLLAFFYFFAWLDLFLTAWAATAD 297 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 787689999999988888750-54421356789999999998889999988754115