HHsearch alignment for GI: 254780367 and conserved domain: pfam03631
>pfam03631 Ribonuclease_BN Ribonuclease BN-like family. This family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme, suggesting that many members of this family may not have this catalytic activity (Bateman A pers. obs.).
Probab=100.00 E-value=0 Score=300.63 Aligned_cols=254 Identities=28% Similarity=0.451 Sum_probs=228.2
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 8557876889999999999999999999998631756-789999999997337413689999999852045741499999
Q gi|254780367|r 20 VEEDGWAMASHISLSALLSVFPFIVFGANLAGFLGAH-QFVPTVIDVVFGAWPEVIAKPITDEILQVLAVPAKGLFTISA 98 (281)
Q Consensus 20 ~~~~~~~~Aaalaf~~llsl~Plli~~~~i~~~~~~~-~~~~~~~~~i~~~lp~~~~~~i~~~l~~~~~~~~~~~~~i~~ 98 (281)
T Consensus 1 ~~~~~~~~Aaalay~~llsl~Pll~~~~~i~~~~~~~~~~~~~i~~~l~~~~p~~~~~~i~~~~~~~~~--~~~~~~i~~ 78 (255)
T pfam03631 1 QEDDLSLLAAALAYYTLLSLFPLLLVLLALLGLFGGPPALQEQLLDLLAEVLPEEAAELIEDILQRLLT--QASLGLLGL 78 (255)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC--CCCCHHHHH
T ss_conf 987388999999999999999999999999998678488999999999987878889999999999980--656199999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999999999999999986302366630367679999999999999999999999999999999741465210799999
Q gi|254780367|r 99 LAAAYFSSNGVEALRISLNRAYRVVEMRSWYITRLISFGYVLLASVTLVIMSFVFVAIPLALAYVRKFFPALGNLLLIIW 178 (281)
Q Consensus 99 ~~~l~~as~~~~~l~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (281)
T Consensus 79 ~~~l~~a~~~~~~l~~a~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 157 (255)
T pfam03631 79 GVLLWSASGGFAALRRALNRIYGVKEKRSFLRRRLLSLGLTLLLGLLLLLSLLLSVFLPALLGILLLGLG-LGLATVLLQ 157 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHH
T ss_conf 9999999999999999999995899888689999999999999999999999999999999999886034-015889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999984057776752101221899999999999999999986522246789999999999999999
Q gi|254780367|r 179 NGRIYATMLALFIGLIFVHLFLPAAKSKIMSILPGVIFTWISWVVGAVLFTHYIVTFSTYSTMYAGLASIMTCLVFLYML 258 (281)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~y~~~P~~~~~~~~~~~Ga~~a~v~~~~~~~~f~~y~~~~~~~~~~YGsl~~ii~lllWly~~ 258 (281)
T Consensus 158 ~~~~~~~~~~~~~~~~~ly~~lp~~~~~~~~~~~Ga~~~~~~~~~~~~~f~~y~~~~~~~~~~YGsl~~vi~~llWly~~ 237 (255)
T pfam03631 158 LLRWLVSLLLLTLLFALLYRFLPNRKVRWRAALPGALLAAVLWLLLSYGFSLYLSNFANYNSTYGSLGALIVLLLWLYLS 237 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999907998555889999999999999999999999998632147799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999983
Q gi|254780367|r 259 GVFFILGAELNASMIIYY 276 (281)
Q Consensus 259 ~~ill~Ga~~na~l~~~~ 276 (281)
T Consensus 238 ~~ill~Ga~~~a~l~~~~ 255 (255)
T pfam03631 238 ALILLLGAELNAALEERR 255 (255)
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999619