HHsearch alignment for GI: 254780367 and conserved domain: pfam03631

>pfam03631 Ribonuclease_BN Ribonuclease BN-like family. This family contains integral membrane proteins with 5 to 6 predicted transmembrane spans. The family include ribonuclease BN that is involved in tRNA maturation. This family of proteins does not seem to contain any completely conserved polar residues that would be expected in a nuclease enzyme, suggesting that many members of this family may not have this catalytic activity (Bateman A pers. obs.).
Probab=100.00  E-value=0  Score=300.63  Aligned_cols=254  Identities=28%  Similarity=0.451  Sum_probs=228.2

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             8557876889999999999999999999998631756-789999999997337413689999999852045741499999
Q gi|254780367|r   20 VEEDGWAMASHISLSALLSVFPFIVFGANLAGFLGAH-QFVPTVIDVVFGAWPEVIAKPITDEILQVLAVPAKGLFTISA   98 (281)
Q Consensus        20 ~~~~~~~~Aaalaf~~llsl~Plli~~~~i~~~~~~~-~~~~~~~~~i~~~lp~~~~~~i~~~l~~~~~~~~~~~~~i~~   98 (281)
T Consensus         1 ~~~~~~~~Aaalay~~llsl~Pll~~~~~i~~~~~~~~~~~~~i~~~l~~~~p~~~~~~i~~~~~~~~~--~~~~~~i~~   78 (255)
T pfam03631         1 QEDDLSLLAAALAYYTLLSLFPLLLVLLALLGLFGGPPALQEQLLDLLAEVLPEEAAELIEDILQRLLT--QASLGLLGL   78 (255)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC--CCCCHHHHH
T ss_conf             987388999999999999999999999999998678488999999999987878889999999999980--656199999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             99999999999999999986302366630367679999999999999999999999999999999741465210799999
Q gi|254780367|r   99 LAAAYFSSNGVEALRISLNRAYRVVEMRSWYITRLISFGYVLLASVTLVIMSFVFVAIPLALAYVRKFFPALGNLLLIIW  178 (281)
Q Consensus        99 ~~~l~~as~~~~~l~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (281)
T Consensus        79 ~~~l~~a~~~~~~l~~a~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  157 (255)
T pfam03631        79 GVLLWSASGGFAALRRALNRIYGVKEKRSFLRRRLLSLGLTLLLGLLLLLSLLLSVFLPALLGILLLGLG-LGLATVLLQ  157 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHH
T ss_conf             9999999999999999999995899888689999999999999999999999999999999999886034-015889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999984057776752101221899999999999999999986522246789999999999999999
Q gi|254780367|r  179 NGRIYATMLALFIGLIFVHLFLPAAKSKIMSILPGVIFTWISWVVGAVLFTHYIVTFSTYSTMYAGLASIMTCLVFLYML  258 (281)
Q Consensus       179 ~~~~~~~~l~~~~~~~~~y~~~P~~~~~~~~~~~Ga~~a~v~~~~~~~~f~~y~~~~~~~~~~YGsl~~ii~lllWly~~  258 (281)
T Consensus       158 ~~~~~~~~~~~~~~~~~ly~~lp~~~~~~~~~~~Ga~~~~~~~~~~~~~f~~y~~~~~~~~~~YGsl~~vi~~llWly~~  237 (255)
T pfam03631       158 LLRWLVSLLLLTLLFALLYRFLPNRKVRWRAALPGALLAAVLWLLLSYGFSLYLSNFANYNSTYGSLGALIVLLLWLYLS  237 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999907998555889999999999999999999999998632147799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             999999999999999983
Q gi|254780367|r  259 GVFFILGAELNASMIIYY  276 (281)
Q Consensus       259 ~~ill~Ga~~na~l~~~~  276 (281)
T Consensus       238 ~~ill~Ga~~~a~l~~~~  255 (255)
T pfam03631       238 ALILLLGAELNAALEERR  255 (255)
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             999999999999999619