Query gi|254780367|ref|YP_003064780.1| ribonuclease protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 281 No_of_seqs 119 out of 2026 Neff 8.7 Searched_HMMs 23785 Date Mon May 30 09:46:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780367.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1oed_E Acetylcholine receptor 7.4 84 0.0036 10.6 5.8 38 33-70 3-42 (260) 2 1oed_C Acetylcholine receptor 5.0 1.2E+02 0.0051 9.9 7.7 30 33-62 3-33 (260) 3 3jyc_A Inward-rectifier K+ cha 4.5 22 0.00094 13.4 -4.1 18 183-200 52-69 (343) 4 1oed_A Acetylcholine receptor 4.1 1.5E+02 0.0065 9.4 8.4 39 33-71 3-42 (227) 5 1oed_B Acetylcholine receptor 3.2 2.1E+02 0.009 8.7 7.2 30 33-62 3-33 (250) 6 3mkt_A Multi antimicrobial ext 3.0 2.3E+02 0.0096 8.5 15.4 18 60-77 127-144 (460) 7 3ixz_B Potassium-transporting 2.8 2.5E+02 0.011 8.3 3.1 18 23-40 33-50 (290) 8 1mxe_E CAM kinase I, target se 2.6 2.7E+02 0.011 8.2 1.4 14 267-280 13-26 (26) 9 1pq1_B BCL2-like protein 11; B 2.6 2.7E+02 0.012 8.2 3.6 21 255-275 6-26 (33) 10 2zxe_B Na+,K+-ATPase beta subu 2.2 3.3E+02 0.014 7.8 3.1 20 238-257 40-59 (305) No 1 >1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Probab=7.42 E-value=84 Score=10.62 Aligned_cols=38 Identities=5% Similarity=-0.068 Sum_probs=22.0 Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHH-HHHHHHHHHHHC Q ss_conf 999999999-99999999863175678-999999999733 Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQF-VPTVIDVVFGAW 70 (281) Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~-~~~~~~~i~~~l 70 (281) ||.+--++| .++..++++++...++. .+++.-.+...+ T Consensus 3 fY~~nliiP~~li~~ls~l~F~lp~~s~geRv~LgIt~LL 42 (260) T 1oed_E 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 42 (260) T ss_dssp SHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEHHHHH T ss_conf 7987199999999999998606168877663775199999 No 2 >1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Probab=4.99 E-value=1.2e+02 Score=9.85 Aligned_cols=30 Identities=7% Similarity=-0.016 Sum_probs=20.1 Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHH Q ss_conf 999999999-999999998631756789999 Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTV 62 (281) Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~ 62 (281) ||.+--++| .++.+++++++..-++..+++ T Consensus 3 fY~~nli~Pc~li~~ls~l~F~LP~~sgeri 33 (260) T 1oed_C 3 FYVINFITPCVLISFLASLAFYLPAESGEKM 33 (260) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH T ss_pred EEEEHHHHHHHHHHHHHHHHHCCCCCCCCCE T ss_conf 6987199999999999999705078887727 No 3 >3jyc_A Inward-rectifier K+ channel KIR2.2; A transmembrane pore and A cytoplasmic pore, metal transport; 3.11A {Gallus gallus} Probab=4.47 E-value=22 Score=13.37 Aligned_cols=18 Identities=6% Similarity=0.181 Sum_probs=8.6 Q ss_pred HHHHHHHHHHHHHHHHHC Q ss_conf 999999999999998405 Q gi|254780367|r 183 YATMLALFIGLIFVHLFL 200 (281) Q Consensus 183 ~~~~l~~~~~~~~~y~~~ 200 (281) .+.++..++.|+.+|++. T Consensus 52 ~~~yl~~~~lFa~ly~~i 69 (343) T 3jyc_A 52 SLAFLVSWLLFGLIFWLI 69 (343) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999 No 4 >1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A Probab=4.13 E-value=1.5e+02 Score=9.36 Aligned_cols=39 Identities=5% Similarity=-0.146 Sum_probs=23.5 Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC Q ss_conf 999999999-999999998631756789999999997337 Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTVIDVVFGAWP 71 (281) Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~~~~i~~~lp 71 (281) ||.+--++| .++..++++++...++..+++.-.+...+. T Consensus 3 yY~~nliiP~~li~~ls~v~F~lP~dsgeRv~L~It~lLs 42 (227) T 1oed_A 3 YFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLS 42 (227) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH T ss_pred EEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHH T ss_conf 8986099999999999999823378877635433899999 No 5 >1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Probab=3.16 E-value=2.1e+02 Score=8.67 Aligned_cols=30 Identities=7% Similarity=0.102 Sum_probs=19.2 Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHH Q ss_conf 999999999-999999998631756789999 Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTV 62 (281) Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~ 62 (281) ||.+--++| .++..++++++...++..+++ T Consensus 3 fy~~~~~~P~~~i~~l~~~~f~lp~~~~~r~ 33 (250) T 1oed_B 3 FYIVYTIIPCILISILAILVFYLPPDAGEKM 33 (250) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH T ss_pred EEEEEHHHHHHHHHHHHHHHHCCCCCCCCCE T ss_conf 7987199999999999999824178887737 No 6 >3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Probab=3.00 E-value=2.3e+02 Score=8.55 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=6.5 Q ss_pred HHHHHHHHHHCCCCHHHH Q ss_conf 999999997337413689 Q gi|254780367|r 60 PTVIDVVFGAWPEVIAKP 77 (281) Q Consensus 60 ~~~~~~i~~~lp~~~~~~ 77 (281) +...+...-..|...... T Consensus 127 ~~a~~Y~~~~~~~~~~~~ 144 (460) T 3mkt_A 127 TKTVGYMHAVIFAVPAYL 144 (460) T ss_dssp HHHHHHHTTGGGHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 998764030100131267 No 7 >3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} Probab=2.78 E-value=2.5e+02 Score=8.35 Aligned_cols=18 Identities=6% Similarity=-0.330 Sum_probs=6.8 Q ss_pred CHHHHHHHHHHHHHHHHH Q ss_conf 787688999999999999 Q gi|254780367|r 23 DGWAMASHISLSALLSVF 40 (281) Q Consensus 23 ~~~~~Aaalaf~~llsl~ 40 (281) .+..++--+-||.++-.+ T Consensus 33 T~~sW~kI~lFYliFY~~ 50 (290) T 3ixz_B 33 TLSRWVWISLYYVAFYVV 50 (290) T ss_pred CHHHHHHHHHHHHHHHHH T ss_conf 764799999999999999 No 8 >1mxe_E CAM kinase I, target sequence of RAT calmodulin-dependent protein kinase I; calmodulin-pepide complex, XRAY, metal binding protein; 1.70A {Drosophila melanogaster} Probab=2.59 E-value=2.7e+02 Score=8.18 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=0.0 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 99999999832379 Q gi|254780367|r 267 ELNASMIIYYWRKK 280 (281) Q Consensus 267 ~~na~l~~~~~~~~ 280 (281) ++||+-..++++|. T Consensus 13 afnatavv~hmrk~ 26 (26) T 1mxe_E 13 AFNATAVVRHMRKX 26 (26) T ss_dssp HHHHHHHHHHHHC- T ss_pred HHHHHHHHHHHHCC T ss_conf 97199999997539 No 9 >1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus} Probab=2.58 E-value=2.7e+02 Score=8.17 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999998 Q gi|254780367|r 255 LYMLGVFFILGAELNASMIIY 275 (281) Q Consensus 255 ly~~~~ill~Ga~~na~l~~~ 275 (281) +|+.-..==+|-|+||.+.++ T Consensus 6 iwiaqelrrigdefna~y~rr 26 (33) T 1pq1_B 6 IRIAQELRRIGDEFNETYTRR 26 (33) T ss_dssp HHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHH T ss_conf 899999999868762104300 No 10 >2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B* Probab=2.23 E-value=3.3e+02 Score=7.80 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 24678999999999999999 Q gi|254780367|r 238 YSTMYAGLASIMTCLVFLYM 257 (281) Q Consensus 238 ~~~~YGsl~~ii~lllWly~ 257 (281) |-..|+-++++.++++|+.+ T Consensus 40 YliFY~~La~~Fa~~m~v~~ 59 (305) T 2zxe_B 40 YLIFYGCLAGIFIGTIQVLL 59 (305) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999 Done!