Query gi|254780367|ref|YP_003064780.1| ribonuclease protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 281
No_of_seqs 119 out of 2026
Neff 8.7
Searched_HMMs 23785
Date Mon May 30 09:46:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780367.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oed_E Acetylcholine receptor 7.4 84 0.0036 10.6 5.8 38 33-70 3-42 (260)
2 1oed_C Acetylcholine receptor 5.0 1.2E+02 0.0051 9.9 7.7 30 33-62 3-33 (260)
3 3jyc_A Inward-rectifier K+ cha 4.5 22 0.00094 13.4 -4.1 18 183-200 52-69 (343)
4 1oed_A Acetylcholine receptor 4.1 1.5E+02 0.0065 9.4 8.4 39 33-71 3-42 (227)
5 1oed_B Acetylcholine receptor 3.2 2.1E+02 0.009 8.7 7.2 30 33-62 3-33 (250)
6 3mkt_A Multi antimicrobial ext 3.0 2.3E+02 0.0096 8.5 15.4 18 60-77 127-144 (460)
7 3ixz_B Potassium-transporting 2.8 2.5E+02 0.011 8.3 3.1 18 23-40 33-50 (290)
8 1mxe_E CAM kinase I, target se 2.6 2.7E+02 0.011 8.2 1.4 14 267-280 13-26 (26)
9 1pq1_B BCL2-like protein 11; B 2.6 2.7E+02 0.012 8.2 3.6 21 255-275 6-26 (33)
10 2zxe_B Na+,K+-ATPase beta subu 2.2 3.3E+02 0.014 7.8 3.1 20 238-257 40-59 (305)
No 1
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=7.42 E-value=84 Score=10.62 Aligned_cols=38 Identities=5% Similarity=-0.068 Sum_probs=22.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHH-HHHHHHHHHHHC
Q ss_conf 999999999-99999999863175678-999999999733
Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQF-VPTVIDVVFGAW 70 (281)
Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~-~~~~~~~i~~~l 70 (281)
||.+--++| .++..++++++...++. .+++.-.+...+
T Consensus 3 fY~~nliiP~~li~~ls~l~F~lp~~s~geRv~LgIt~LL 42 (260)
T 1oed_E 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 42 (260)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEHHHHH
T ss_conf 7987199999999999998606168877663775199999
No 2
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=4.99 E-value=1.2e+02 Score=9.85 Aligned_cols=30 Identities=7% Similarity=-0.016 Sum_probs=20.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999-999999998631756789999
Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTV 62 (281)
Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~ 62 (281)
||.+--++| .++.+++++++..-++..+++
T Consensus 3 fY~~nli~Pc~li~~ls~l~F~LP~~sgeri 33 (260)
T 1oed_C 3 FYVINFITPCVLISFLASLAFYLPAESGEKM 33 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred EEEEHHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 6987199999999999999705078887727
No 3
>3jyc_A Inward-rectifier K+ channel KIR2.2; A transmembrane pore and A cytoplasmic pore, metal transport; 3.11A {Gallus gallus}
Probab=4.47 E-value=22 Score=13.37 Aligned_cols=18 Identities=6% Similarity=0.181 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999998405
Q gi|254780367|r 183 YATMLALFIGLIFVHLFL 200 (281)
Q Consensus 183 ~~~~l~~~~~~~~~y~~~ 200 (281)
.+.++..++.|+.+|++.
T Consensus 52 ~~~yl~~~~lFa~ly~~i 69 (343)
T 3jyc_A 52 SLAFLVSWLLFGLIFWLI 69 (343)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 4
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
Probab=4.13 E-value=1.5e+02 Score=9.36 Aligned_cols=39 Identities=5% Similarity=-0.146 Sum_probs=23.5
Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 999999999-999999998631756789999999997337
Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTVIDVVFGAWP 71 (281)
Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~~~~i~~~lp 71 (281)
||.+--++| .++..++++++...++..+++.-.+...+.
T Consensus 3 yY~~nliiP~~li~~ls~v~F~lP~dsgeRv~L~It~lLs 42 (227)
T 1oed_A 3 YFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLS 42 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHH
T ss_conf 8986099999999999999823378877635433899999
No 5
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=3.16 E-value=2.1e+02 Score=8.67 Aligned_cols=30 Identities=7% Similarity=0.102 Sum_probs=19.2
Q ss_pred HHHHHHHHH-HHHHHHHHHHHCCCHHHHHHH
Q ss_conf 999999999-999999998631756789999
Q gi|254780367|r 33 LSALLSVFP-FIVFGANLAGFLGAHQFVPTV 62 (281)
Q Consensus 33 f~~llsl~P-lli~~~~i~~~~~~~~~~~~~ 62 (281)
||.+--++| .++..++++++...++..+++
T Consensus 3 fy~~~~~~P~~~i~~l~~~~f~lp~~~~~r~ 33 (250)
T 1oed_B 3 FYIVYTIIPCILISILAILVFYLPPDAGEKM 33 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred EEEEEHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 7987199999999999999824178887737
No 6
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=3.00 E-value=2.3e+02 Score=8.55 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=6.5
Q ss_pred HHHHHHHHHHCCCCHHHH
Q ss_conf 999999997337413689
Q gi|254780367|r 60 PTVIDVVFGAWPEVIAKP 77 (281)
Q Consensus 60 ~~~~~~i~~~lp~~~~~~ 77 (281)
+...+...-..|......
T Consensus 127 ~~a~~Y~~~~~~~~~~~~ 144 (460)
T 3mkt_A 127 TKTVGYMHAVIFAVPAYL 144 (460)
T ss_dssp HHHHHHHTTGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 998764030100131267
No 7
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa}
Probab=2.78 E-value=2.5e+02 Score=8.35 Aligned_cols=18 Identities=6% Similarity=-0.330 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 787688999999999999
Q gi|254780367|r 23 DGWAMASHISLSALLSVF 40 (281)
Q Consensus 23 ~~~~~Aaalaf~~llsl~ 40 (281)
.+..++--+-||.++-.+
T Consensus 33 T~~sW~kI~lFYliFY~~ 50 (290)
T 3ixz_B 33 TLSRWVWISLYYVAFYVV 50 (290)
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 764799999999999999
No 8
>1mxe_E CAM kinase I, target sequence of RAT calmodulin-dependent protein kinase I; calmodulin-pepide complex, XRAY, metal binding protein; 1.70A {Drosophila melanogaster}
Probab=2.59 E-value=2.7e+02 Score=8.18 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999999832379
Q gi|254780367|r 267 ELNASMIIYYWRKK 280 (281)
Q Consensus 267 ~~na~l~~~~~~~~ 280 (281)
++||+-..++++|.
T Consensus 13 afnatavv~hmrk~ 26 (26)
T 1mxe_E 13 AFNATAVVRHMRKX 26 (26)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCC
T ss_conf 97199999997539
No 9
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=2.58 E-value=2.7e+02 Score=8.17 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999998
Q gi|254780367|r 255 LYMLGVFFILGAELNASMIIY 275 (281)
Q Consensus 255 ly~~~~ill~Ga~~na~l~~~ 275 (281)
+|+.-..==+|-|+||.+.++
T Consensus 6 iwiaqelrrigdefna~y~rr 26 (33)
T 1pq1_B 6 IRIAQELRRIGDEFNETYTRR 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHH
T ss_conf 899999999868762104300
No 10
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_B* 3b8e_B*
Probab=2.23 E-value=3.3e+02 Score=7.80 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 24678999999999999999
Q gi|254780367|r 238 YSTMYAGLASIMTCLVFLYM 257 (281)
Q Consensus 238 ~~~~YGsl~~ii~lllWly~ 257 (281)
|-..|+-++++.++++|+.+
T Consensus 40 YliFY~~La~~Fa~~m~v~~ 59 (305)
T 2zxe_B 40 YLIFYGCLAGIFIGTIQVLL 59 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999
Done!