HHsearch alignment for GI: 254780368 and conserved domain: PRK12342
>PRK12342 putative electron transfer flavoprotein YdiQ; Provisional.
Probab=100.00 E-value=0 Score=511.58 Aligned_cols=243 Identities=26% Similarity=0.365 Sum_probs=222.6
Q ss_pred CEEEEEEEEECCCCCCEEECCCCCEEEECCCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHH--HHHHHHHHHH
Q ss_conf 96999860303887605980788816324877332601368999999998559985289999714101--5888887850
Q gi|254780368|r 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKV--EEVLKNSLAM 78 (249)
Q Consensus 1 M~I~V~vK~VpD~~~~i~i~~~~~~i~~~~~~~~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~--~~~Lr~alAm 78 (249)
T Consensus 1 M~I~VciKqVPD~~-~~~~~~d~-~l~~~~~~~~iNp~D~~AlE~Al~lk~~--gg~v~vvs~G~~~~~~~~~~r~alAm 76 (254)
T PRK12342 1 MKIITCFKLVPEEQ-DIVVTPEY-TLNFDNAEAKISQFDLNAIEAASQLATD--GDEIAALTVGGSLLQNSKVRKDVLSR 76 (254)
T ss_pred CEEEEEEEECCCCC-EEEECCCC-CEEECCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 97999999888855-05884899-7885378655686569999999998861--99699999568802559999999973
Q ss_pred CCCCCEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEE
Q ss_conf 77762376336--5478899999999986126864999961135888612899999985796133244334328659999
Q gi|254780368|r 79 GADRGILIESN--ETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVT 156 (249)
Q Consensus 79 GaD~ai~i~d~--~~~D~~~~A~~La~~i~~~~~DLIl~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~ 156 (249)
T Consensus 77 GaD~a~li~d~~~~g~D~~~tA~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~i~~~~~~~~v~ 156 (254)
T PRK12342 77 GPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSKIQRQGNKLVVE 156 (254)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCEEEEE
T ss_conf 79889998457656668899999999999983969999936212489885789999870997166799999719989999
Q ss_pred EECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEECHHHHCCCC-CCCEEEEEEECCCCCCCC-EEECC
Q ss_conf 8358967999963988999843556545469888998852166120498907666-684579995178852474-55379
Q gi|254780368|r 157 REVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDL-TPRLKVLRFEENRAERKG-LRLYS 234 (249)
Q Consensus 157 r~~e~g~e~v~~~lPavisv~~~~n~PR~psl~~im~A~kk~i~~~~~~dlg~d~-~~~~~v~~~~~p~~~~~g-~~~e~ 234 (249)
T Consensus 157 R~~e~g~e~ve~~lPavvtv~~~~n~PR~psl~~im~AkkK~i~~~~~~dlg~~~~~~~~~v~~~~~Pp~~~~~~~i~eg 236 (254)
T PRK12342 157 RTLEDDVEVIELSLPAVLCVTSDINVPRIPSMKAILGAGKKPVNQWQASDIGWSQSAPLAELVSILVPPQTERKHIILDN 236 (254)
T ss_pred EECCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHCCCCCEEECHHHCCCCCCCCCEEEEEEECCCCCCCCCEEECC
T ss_conf 99179679999779989999899885577997899986699850858999497767786389997479976677668249
Q ss_pred -----HHHHHHHHHHHHC
Q ss_conf -----9999999998617
Q gi|254780368|r 235 -----TTKLIEILKSKHD 247 (249)
Q Consensus 235 -----~~eLv~~L~~e~~ 247 (249)
T Consensus 237 d~~e~v~~Lv~~Lkee~~ 254 (254)
T PRK12342 237 DSPEAIAELAEHLKKALN 254 (254)
T ss_pred CHHHHHHHHHHHHHHHHC
T ss_conf 989999999999988659