HHsearch alignment for GI: 254780368 and conserved domain: cd00293
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=95.79 E-value=0.082 Score=31.86 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEEECCCH--------------HHHHHHHHHHHCCCCCEEEECCC-CCCHHHHHHH
Q ss_conf 60136899999999855998528999971410--------------15888887850777623763365-4788999999
Q gi|254780368|r 36 NPFDEIALEESLQLREKGIATEVIVVSIGSCK--------------VEEVLKNSLAMGADRGILIESNE-TLEPLSIAKI 100 (249)
Q Consensus 36 n~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~--------------~~~~Lr~alAmGaD~ai~i~d~~-~~D~~~~A~~ 100 (249)
T Consensus 9 s~~s~~al~~a~~la~~-~~~~l~~v~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~ 84 (130)
T cd00293 9 SEESERALRWAARLARR-LGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGDP---AEA 84 (130)
T ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCH---HHH
T ss_conf 98999999999999987-29979999997288655301446789999999999999854279838999994661---899
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCE-EHHHHHHHHHC
Q ss_conf 9998612686499996113588861-28999999857
Q gi|254780368|r 101 LREIVKKENPIIVIAGKQTTDNESN-QTGQMLAALMR 136 (249)
Q Consensus 101 La~~i~~~~~DLIl~G~~S~D~~~g-~v~~~lA~~Lg 136 (249)
T Consensus 85 i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~v~~ 121 (130)
T cd00293 85 ILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLR 121 (130)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 9887776118899994799975445602719999983