HHSEARCH alignment of GI: 254780368 and SCOP domain: d3clsd1

Alignment
>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]}
Probab=99.63  E-value=5.8e-15  Score=113.49  Aligned_cols=172  Identities=16%  Similarity=0.213  Sum_probs=134.1

Q ss_pred             ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCC-CCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             326013689999999985599852899997141015888887850777623763365-4788999999999861268649
Q gi|254780368|r   34 SMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMGADRGILIESNE-TLEPLSIAKILREIVKKENPII  112 (249)
Q Consensus        34 ~in~~D~~AlE~Al~lke~~~g~~V~~lsvG~~~~~~~Lr~alAmGaD~ai~i~d~~-~~D~~~~A~~La~~i~~~~~DL  112 (249)
                      .+++...-+|..|.+|.++ .|++|+++.+|+. .+....++.+.|+|+.+++.++. ..++...+.+|++++++.+|++
T Consensus        13 ~l~~~slEll~~A~~la~~-~g~~v~avv~G~~-~~~~~~~l~~~Ga~~v~~~~~~~~~~~~~~~~~al~~~~~~~~p~~   90 (192)
T d3clsd1          13 DLRPVSLELIGAANGLKKS-GEDKVVVAVIGSQ-ADAFVPALSVNGVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSV   90 (192)
T ss_dssp             EECTHHHHHHHHHHHHCSS-TTCEEEEEEESTT-GGGGHHHHCBTTCSEEEEEECSCSSCCHHHHHHHHHHHHHHHCCSE
T ss_pred             EECHHHHHHHHHHHHHHHH-CCCCEEEEEECCC-HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             9989999999999998885-3993899996896-4777766531385399995573111588888778999996305542


Q ss_pred             EEEEECCCCCCCEEHHHHHHHHHCCCCEEEEEEEEECCCEEEEEEECCCCE--EEEEEC--CCEEEEEECCCCCCCCCCH
Q ss_conf             999611358886128999999857961332443343286599998358967--999963--9889998435565454698
Q gi|254780368|r  113 VIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGT--MTMETP--LPAVITVDLNLNEPRYISL  188 (249)
Q Consensus       113 Il~G~~S~D~~~g~v~~~lA~~Lg~p~vt~v~~i~~~~~~~~v~r~~e~g~--e~v~~~--lPavisv~~~~n~PR~psl  188 (249)
                      ||+|..+.   ...+.|++|.+||+|+++++++++.+++.++++|...+|.  .+++++  .|+++|+..+.++|.-   
T Consensus        91 Vl~~~t~~---grdlaprlAa~L~~~~vsdv~~l~~~~~~~~~~r~~~~G~~~a~~~~~~~~~~v~tvr~~~f~~~~---  164 (192)
T d3clsd1          91 VLLPHSVD---SLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLE---  164 (192)
T ss_dssp             EEEESSHH---HHTTHHHHHHHSSCEEEEEECEEEEETTEEEEEEEETTTTEEEEEECTTCSCEEEEECTTSSCCCC---
T ss_pred             EEECCCHH---HHHHHHHHHHHHCCCEECCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCC---
T ss_conf             89537765---779999998752867312407997349816899743688089999953899799998988768776---


Q ss_pred             HHHHHHHHCCCCEECHHHHCCCCCCCEEEEEEE
Q ss_conf             889988521661204989076666845799951
Q gi|254780368|r  189 PNIIKARKKRIEKKKATDFAIDLTPRLKVLRFE  221 (249)
Q Consensus       189 ~~im~A~kk~i~~~~~~dlg~d~~~~~~v~~~~  221 (249)
                          .....+++.++...    ..+++++..+.
T Consensus       165 ----~~~~~~v~~~~~~~----~~~r~~~~~~~  189 (192)
T d3clsd1         165 ----GAGSPVVSNVDAPS----VQSRSQNKDYV  189 (192)
T ss_dssp             ----SBCCCEEEEEECCC----CCCSEEEEEEE
T ss_pred             ----CCCCCCEEEECCCC----CCCCCEEEEEE
T ss_conf             ----78997479944788----77762799999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain
species: Methylophilus methylotrophus [TaxId: 17]