RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein beta subunit [Candidatus Liberibacter asiaticus str. psy62] (249 letters) >gnl|CDD|183455 PRK12342, PRK12342, hypothetical protein; Provisional. Length = 254 Score = 69.8 bits (171), Expect = 7e-13 Identities = 52/192 (27%), Positives = 95/192 (49%), Gaps = 7/192 (3%) Query: 19 IKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSIGSCKVE--EVLKNSL 76 + + + + +N + ++ FD A+E + QL G E+ +++G ++ +V K+ L Sbjct: 18 VTPERT-LNFDNAEAKISQFDLNAIEAASQLATDG--DEIAALTVGGSLLQNSKVRKDVL 74 Query: 77 AMGADRGILI--ESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAAL 134 + G L+ E PL AK L ++K +++ G+ + D + Q G +L L Sbjct: 75 SRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGEL 134 Query: 135 MRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKA 194 ++ P VS I+ N IV R + +E LPAV+ V ++N PR S+ I+ A Sbjct: 135 LQLPVINAVSKIQRQGNKLIVERTLEDDVEVLELSLPAVLCVTSDINVPRIPSMKAILGA 194 Query: 195 RKKRIEKKKATD 206 KK + + +A+D Sbjct: 195 GKKPVTQWQASD 206 >gnl|CDD|179569 PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed. Length = 256 Score = 67.1 bits (164), Expect = 4e-12 Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 6/224 (2%) Query: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60 MKI+ K V + + + N ++ ++ +D A+E + QL+++ +V Sbjct: 1 MKIITCYKCVPD-EQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTA 59 Query: 61 VSIGSCKVEEV--LKNSLAMGADRGILI--ESNETLEPLSIAKILREIVKKENPIIVIAG 116 +S+G + K+ L+ G D I++ + E P A L +K +++ G Sbjct: 60 LSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCG 119 Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNI-KIIDNHAIVTREVGHGTMTMETPLPAVIT 175 ++D + Q G ++ ++ P VS I + D+ V RE+ T+ PLPAVI Sbjct: 120 DGSSDLYAQQVGLLVGEILNIPAINGVSKIISLTDDTLTVERELEDEVETLSIPLPAVIA 179 Query: 176 VDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLR 219 V ++N P+ S+ I+ A KK ++ A D + P + Sbjct: 180 VSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEPAWSEQQ 223 >gnl|CDD|182929 PRK11053, PRK11053, dihydropteridine reductase; Provisional. Length = 217 Score = 31.9 bits (73), Expect = 0.16 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Query: 35 MNPFDEIALEESLQLREKGIATEVIVVSIG 64 + FD L+ LREKG+ T +VV +G Sbjct: 164 IEGFDAAILDAEFGLREKGL-TSSVVVPLG 192 >gnl|CDD|185534 PTZ00262, PTZ00262, subtilisin-like protease; Provisional. Length = 639 Score = 27.6 bits (61), Expect = 2.9 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 9/100 (9%) Query: 26 IETENTKISMNPFDEIALEESLQ--LREKGIATEV-----IVVSIGSCKVEEVLKNSLAM 78 I +EN S + F E LEE++ L KG + + ++ + S + LKN + + Sbjct: 129 IVSENHATSPSFFQESLLEENVVSFLGSKGRLSNLKNIHSYIIELFSDITDRELKNYIQL 188 Query: 79 GADRGILIESNETLEP--LSIAKILREIVKKENPIIVIAG 116 +G LIES++ + + I I + + E+ +I +G Sbjct: 189 LESKGALIESDKLVHADEIGICGIKDAVRRGEDRVIWESG 228 >gnl|CDD|132337 TIGR03294, FrhG, coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family. Length = 228 Score = 27.1 bits (60), Expect = 4.3 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 4/28 (14%) Query: 39 DEIALEESLQLREKGIATEVIVVSIGSC 66 DE +LEE +LREK +VV++G+C Sbjct: 64 DEHSLEEIKELREKA----KVVVALGAC 87 >gnl|CDD|179220 PRK01099, rpoK, DNA-directed RNA polymerase subunit K; Provisional. Length = 62 Score = 26.4 bits (59), Expect = 7.3 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Query: 76 LAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVI 114 ++MGA +LI+ E+ +PL IA+ E + PI V Sbjct: 23 ISMGAP--VLIDIPESTDPLDIAEE--EFKRGVLPITVK 57 >gnl|CDD|162633 TIGR01973, NuoG, NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes. Length = 603 Score = 26.2 bits (58), Expect = 8.6 Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 80 ADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWP 138 AD +L+ ++ E + LR+ VKK + + G + + ++ P Sbjct: 363 ADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVFHPGLSP 421 >gnl|CDD|180919 PRK07282, PRK07282, acetolactate synthase catalytic subunit; Reviewed. Length = 566 Score = 25.9 bits (57), Expect = 9.7 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 18/83 (21%) Query: 90 ETLEP--LSIAKILREIVKKENPIIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIK 147 TLEP + I KIL+++ K + P+I +AG E+ A + P Sbjct: 191 PTLEPNDMQIKKILKQLSKAKKPVI-LAGGGINYAEAATELNAFAERYQIP--------- 240 Query: 148 IIDNHAIVTREVGHGTMTMETPL 170 +VT +G GT+ PL Sbjct: 241 ------VVTTLLGQGTIATSHPL 257 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.316 0.133 0.359 Gapped Lambda K H 0.267 0.0618 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,944,693 Number of extensions: 252813 Number of successful extensions: 605 Number of sequences better than 10.0: 1 Number of HSP's gapped: 603 Number of HSP's successfully gapped: 26 Length of query: 249 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 158 Effective length of database: 4,028,145 Effective search space: 636446910 Effective search space used: 636446910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 56 (25.6 bits)