RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein beta subunit [Candidatus Liberibacter asiaticus str. psy62] (249 letters) >1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S* Length = 255 Score = 266 bits (682), Expect = 3e-72 Identities = 110/247 (44%), Positives = 162/247 (65%), Gaps = 4/247 (1%) Query: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60 +++LV +K VI+Y K+R+K D +G+ T+ K SMNPF EIA+EE+++L+EK + EVI Sbjct: 4 LRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIA 63 Query: 61 VSIGSCKVEEVLKNSLAMGADRGILIE----SNETLEPLSIAKILREIVKKENPIIVIAG 116 VS G + +E ++ +LAMGADRGI +E E L PL +A++L ++ +KE +V+ G Sbjct: 64 VSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLG 123 Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITV 176 KQ D++ NQTGQM A + WPQ TF S + + + V RE+ G T+ LPAV+T Sbjct: 124 KQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTA 183 Query: 177 DLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTT 236 DL LNEPRY +LPNI+KA+KK+IE K D +DLT +L V+ E+ G+++ +T Sbjct: 184 DLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTE 243 Query: 237 KLIEILK 243 L+ LK Sbjct: 244 DLVAKLK 250 >1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 Length = 252 Score = 265 bits (680), Expect = 5e-72 Identities = 124/250 (49%), Positives = 175/250 (70%), Gaps = 4/250 (1%) Query: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60 MK+LVP+K +I+YN K R+K+D SG++ N K+SMNPFDEIA+EE+++L+EKG A E+I Sbjct: 1 MKVLVPVKRLIDYNVKARVKSDGSGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIA 60 Query: 61 VSIGSCKVEEVLKNSLAMGADRGILIES----NETLEPLSIAKILREIVKKENPIIVIAG 116 VSIG + E L+ +LAMGADR IL+ + + +EPL++AKIL + + E ++IAG Sbjct: 61 VSIGVKQAAETLRTALAMGADRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAG 120 Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITV 176 KQ DN+ N TGQMLAA++ W QATF S ++I A VTREV G T+ LPAV+T Sbjct: 121 KQAIDNDMNATGQMLAAILGWAQATFASKVEIEGAKAKVTREVDGGLQTIAVSLPAVVTA 180 Query: 177 DLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTT 236 DL LNEPRY SLPNI+KA+KK +++K A D+ +D+ PRL+V+ E + G+++ S Sbjct: 181 DLRLNEPRYASLPNIMKAKKKPLDEKTAADYGVDVAPRLEVVSVREPEGRKAGIKVGSVD 240 Query: 237 KLIEILKSKH 246 +L+ LK Sbjct: 241 ELVGKLKEAG 250 >1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C* Length = 264 Score = 202 bits (515), Expect = 5e-53 Identities = 78/259 (30%), Positives = 133/259 (51%), Gaps = 16/259 (6%) Query: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIA-TEVI 59 MKILV +K I+ D ++ + +N +D+ +LEE+++++E EV+ Sbjct: 1 MKILVAVKQTAALEEDFEIREDGMDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVV 60 Query: 60 VVSIGSCKVEEVLKNSLAMGADRGILIESNET--LEPLSIAKILREIVKKENPIIVIAGK 117 VVS+G +V+E L+ LA GADR + + + + + + +IL E++KKE P +V AG Sbjct: 61 VVSVGPDRVDESLRKCLAKGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGV 120 Query: 118 QTTDNESNQTGQMLAALMRWPQATFVSNIKII--DNHAIVTREV-GHGTMTMETPLPAVI 174 Q++D TG +A+ + WP A V++++ DN A++ RE+ G +E PAV+ Sbjct: 121 QSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAVIRRELEGGMLQEVEINCPAVL 180 Query: 175 TVDLNLNEPRYISLPNIIKARKKRIEKKKATDFAIDLT------PRLKVLRFEENRAERK 228 T+ L +N+PRY SL I +A K IE+ D + +V R R Sbjct: 181 TIQLGINKPRYASLRGIKQAATKPIEEVSLADIGLSANDVGAAQSMSRVRRMYIPEKGRA 240 Query: 229 GLRLYST----TKLIEILK 243 + + K+I+I+ Sbjct: 241 TMIEGTISEQAAKIIQIIN 259 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.5 bits (92), Expect = 6e-04 Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 59/163 (36%) Query: 6 PIKGVINYNTKVR-IKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIVVSIG 64 P + + N +R K SG++ ++I PF E L+ S + + + Sbjct: 382 PPQSLYGLNLTLRKAKAP-SGLDQ--SRI---PFSERKLKFSNRF-----------LPVA 424 Query: 65 S-------CKVEEVLKNSLAMGADRGILIESNETLEPLSI-------AKILREIVKKEN- 109 S +++ L + + + + I LR + + Sbjct: 425 SPFHSHLLVPASDLINKDLV---KNNVSFNAKD----IQIPVYDTFDGSDLRVL--SGSI 475 Query: 110 -PIIVIAGKQTTDNESNQTGQMLAALM-RWPQATFVSNIKIID 150 IV + L +W T I+D Sbjct: 476 SERIV---------------DCIIRLPVKWETTTQFKATHILD 503 Score = 28.4 bits (63), Expect = 1.7 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 14/52 (26%) Query: 10 VINYNTKVRIKN-------DYSGIETENTK---ISMNPFDEIALEESLQLRE 51 ++NYN ++N D ++T I + D I L++SL L E Sbjct: 1843 IVNYN----VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890 >3fet_A Electron transfer flavoprotein subunit alpha related protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum} Length = 166 Score = 39.0 bits (91), Expect = 0.001 Identities = 17/130 (13%), Positives = 44/130 (33%), Gaps = 17/130 (13%) Query: 57 EVIVVSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAG 116 ++ V IG ++ +G+ + + +++ + +I N + G Sbjct: 28 DMDSVIIGE-------GDAKGLGSKVLYRAKKGTPFDA--VSEGILKIAG--NYDYIAIG 76 Query: 117 KQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREV--GHGTMTMETPLPAVI 174 + L+ + AT + +++ A R G + E+ ++ Sbjct: 77 STEV---GREIAGYLSFKTGFYTATEIFSLEFNGQKAHTKRFFYGGKTVIEEESD-ARIL 132 Query: 175 TVDLNLNEPR 184 TV + E + Sbjct: 133 TVAPGVIEAK 142 >2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} Length = 451 Score = 33.7 bits (77), Expect = 0.038 Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 15/159 (9%) Query: 40 EIALEESLQLREKGIATEVIVVSIGSCKVEEVLKNSLAMG-ADRGILIESNETLE-PLSI 97 EIA+ R+ GI T V + S E K++L AD + + + L+I Sbjct: 11 EIAVRIIRACRDLGIQT-VAIYS-------EGDKDALHTQIADEAYCVGPTLSKDSYLNI 62 Query: 98 AKILREIVKKENP--IIVIAGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIV 155 IL I + G + + + + P + + I D Sbjct: 63 PNIL-SIATSTGCDGVHPGYGFLAENADFAELCEACQLKFIGPSYQSIQKMGIKDVAKAE 121 Query: 156 TREVGHGTMTMETPLPAVITVDLNLNEPRYISLPNIIKA 194 + + + V + I P IIKA Sbjct: 122 MIKANVPVVPGSD--GLMKDVSEAKKIAKKIGYPVIIKA 158 >2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A Length = 219 Score = 28.8 bits (64), Expect = 1.4 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 7/59 (11%) Query: 59 IVVSIGSCKVEEVLKNSLAMGADRGILIE----SNETLEPLSIAKILREIVKKENPIIV 113 I V + E LK + GAD ++E + + L E+ + I+ Sbjct: 3 IAVPLDDTNFSENLKKAKEKGAD---IVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58 >2vld_A NUCS, UPF0286 protein pyrab01260; endonuclease, hydrolase; 2.60A {Pyrococcus abyssi} Length = 251 Score = 27.9 bits (62), Expect = 2.1 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 9/62 (14%) Query: 43 LEESLQLREKGIATEVIVVSIGSCKVEEV--LKNSLAMG-------ADRGILIESNETLE 93 EE +L + +V CKV K+ L G D LI N+ E Sbjct: 12 EEEIKELLDLAEKHGGVVTIFARCKVHYEGRAKSELGEGDRIIIIKPDGSFLIHQNKKRE 71 Query: 94 PL 95 P+ Sbjct: 72 PV 73 >1ok8_A Major envelope protein E; virus/viral protein, membrane fusion, flavivirus, fusion peptide, low-PH conformational change, trimer; HET: NAG; 2.0A {Dengue virus type 2} SCOP: b.1.18.4 f.10.1.1 PDB: 1oan_A* 1oke_A* 2b6b_A 1tge_A 1tg8_A* 1thd_A 3c5x_A* 3c6e_A* 3c6d_A 3c6r_A 3ixy_A 2r6p_A 2jsf_A 2r29_A 2r69_A Length = 394 Score = 27.8 bits (62), Expect = 2.4 Identities = 16/106 (15%), Positives = 24/106 (22%), Gaps = 38/106 (35%) Query: 115 AGKQTTDNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREV--------------- 159 A KQ +Q G M AL + S + H + + Sbjct: 245 AKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGH--LKCRLRMDKLQLKGMSYSMC 302 Query: 160 -------------GHGTMTME-----TPLP---AVITVDLNLNEPR 184 HGT+ + P +DL Sbjct: 303 TGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVL 348 >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Length = 261 Score = 27.1 bits (59), Expect = 4.1 Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 15/90 (16%) Query: 91 TLEPLSIAKILREIVKKENPIIVIA-----GKQTTDNESNQTGQMLAALMRWPQATFVSN 145 + L + + E+ ++ +I++ GK TT +A+++ + T + Sbjct: 7 EFKKLGLPDKVLELCHRKMGLILVTGPTGSGKSTT----------IASMIDYINQTKSYH 56 Query: 146 IKIIDNHAIVTREVGHGTMTMETPLPAVIT 175 I I++ + + + Sbjct: 57 IITIEDPIEYVFKHKKSIVNQREVGEDTKS 86 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.9 bits (58), Expect = 4.1 Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%) Query: 196 KKRIEKKKATD--FAIDLTPRLKV 217 K+ ++K +A+ +A D P L + Sbjct: 19 KQALKKLQASLKLYADDSAPALAI 42 Score = 26.9 bits (58), Expect = 4.3 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 8/31 (25%) Query: 69 EEVLKN---SLAMGADR---GILIESNETLE 93 ++ LK SL + AD + I++ T+E Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA--TME 47 Score = 26.9 bits (58), Expect = 4.5 Identities = 6/16 (37%), Positives = 10/16 (62%), Gaps = 3/16 (18%) Query: 222 ENRAERK---GLRLYS 234 E +A +K L+LY+ Sbjct: 18 EKQALKKLQASLKLYA 33 >2e6k_A Transketolase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.09A {Thermus thermophilus HB8} Length = 651 Score = 26.9 bits (58), Expect = 4.9 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 6/57 (10%) Query: 40 EIALEESLQLREKGIATEVIVVSIGSCKV----EEVLKNSLAMGADRGILIESNETL 92 +AL LREKG+ VVS+ S ++ E + + + +E+ +L Sbjct: 554 HLALRAQALLREKGVRVR--VVSLPSFELFAAQPEAYRKEVLPPGLPVVAVEAGASL 608 >1gso_A Protein (glycinamide ribonucleotide synthetase); GAR-SYN, ATP-grAsp, purine de novo biosynthetic pathway, substrate channeling, ligase; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 Length = 431 Score = 26.3 bits (57), Expect = 6.5 Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 1/31 (3%) Query: 89 NETLEPLSIAKILREIVKKENPIIVIAGKQT 119 N + I +L + + E + I G + Sbjct: 47 NVAIGVTDIPALL-DFAQNEKIDLTIVGPEA 76 >3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O Length = 121 Score = 26.2 bits (58), Expect = 7.4 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Query: 94 PLSIAKILREIVK--KENPIIVIAGKQTTDNE-SNQTGQMLAAL 134 P+S+++I R + + N +V+ G T D +AAL Sbjct: 41 PVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAAL 84 >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Length = 307 Score = 25.8 bits (56), Expect = 8.7 Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 93 EPLSIAKILREIVKKENPIIVIAG 116 EP S AK LR +++ + +IV G Sbjct: 8 EPFSGAKKLRHLLENTDELIVCPG 31 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.133 0.359 Gapped Lambda K H 0.267 0.0607 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,039,595 Number of extensions: 94699 Number of successful extensions: 368 Number of sequences better than 10.0: 1 Number of HSP's gapped: 362 Number of HSP's successfully gapped: 36 Length of query: 249 Length of database: 5,693,230 Length adjustment: 90 Effective length of query: 159 Effective length of database: 3,511,270 Effective search space: 558291930 Effective search space used: 558291930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.2 bits)