BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein beta subunit [Candidatus Liberibacter asiaticus str. psy62] (249 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein beta subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 499 bits (1285), Expect = e-143, Method: Compositional matrix adjust. Identities = 249/249 (100%), Positives = 249/249 (100%) Query: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV Sbjct: 1 MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60 Query: 61 VSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTT 120 VSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTT Sbjct: 61 VSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTT 120 Query: 121 DNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITVDLNL 180 DNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITVDLNL Sbjct: 121 DNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITVDLNL 180 Query: 181 NEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTTKLIE 240 NEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTTKLIE Sbjct: 181 NEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTTKLIE 240 Query: 241 ILKSKHDLL 249 ILKSKHDLL Sbjct: 241 ILKSKHDLL 249 >gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 23.1 bits (48), Expect = 4.2, Method: Compositional matrix adjust. Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 4/22 (18%) Query: 192 IKARKKRIEKKKATDFAIDLTP 213 IKA KKR + DFAID TP Sbjct: 183 IKAGKKRASE----DFAIDSTP 200 >gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 373 Score = 22.7 bits (47), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 10/52 (19%) Query: 40 EIALEESLQLREKGI----------ATEVIVVSIGSCKVEEVLKNSLAMGAD 81 I L LQLRE G+ + IV IGS K+ E + MG D Sbjct: 199 SIDLMSILQLREIGVLLTAVMIAGRSGSAIVAEIGSMKINEEIDAIRTMGLD 250 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 22.3 bits (46), Expect = 8.1, Method: Compositional matrix adjust. Identities = 11/25 (44%), Positives = 15/25 (60%) Query: 148 IIDNHAIVTREVGHGTMTMETPLPA 172 I+DN +VT G+ T T T LP+ Sbjct: 154 ILDNPLVVTGSAGNDTGTEVTFLPS 178 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.133 0.359 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 149,784 Number of Sequences: 1233 Number of extensions: 5935 Number of successful extensions: 23 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 7 length of query: 249 length of database: 328,796 effective HSP length: 72 effective length of query: 177 effective length of database: 240,020 effective search space: 42483540 effective search space used: 42483540 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 37 (18.9 bits)