BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein
beta subunit [Candidatus Liberibacter asiaticus str. psy62]
         (249 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780368|ref|YP_003064781.1| electron transfer flavoprotein beta subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 249

 Score =  499 bits (1285), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/249 (100%), Positives = 249/249 (100%)

Query: 1   MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60
           MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV
Sbjct: 1   MKILVPIKGVINYNTKVRIKNDYSGIETENTKISMNPFDEIALEESLQLREKGIATEVIV 60

Query: 61  VSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTT 120
           VSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTT
Sbjct: 61  VSIGSCKVEEVLKNSLAMGADRGILIESNETLEPLSIAKILREIVKKENPIIVIAGKQTT 120

Query: 121 DNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITVDLNL 180
           DNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITVDLNL
Sbjct: 121 DNESNQTGQMLAALMRWPQATFVSNIKIIDNHAIVTREVGHGTMTMETPLPAVITVDLNL 180

Query: 181 NEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTTKLIE 240
           NEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTTKLIE
Sbjct: 181 NEPRYISLPNIIKARKKRIEKKKATDFAIDLTPRLKVLRFEENRAERKGLRLYSTTKLIE 240

Query: 241 ILKSKHDLL 249
           ILKSKHDLL
Sbjct: 241 ILKSKHDLL 249


>gi|254780477|ref|YP_003064890.1| DSBA oxidoreductase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 232

 Score = 23.1 bits (48), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 4/22 (18%)

Query: 192 IKARKKRIEKKKATDFAIDLTP 213
           IKA KKR  +    DFAID TP
Sbjct: 183 IKAGKKRASE----DFAIDSTP 200


>gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
          Length = 373

 Score = 22.7 bits (47), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 10/52 (19%)

Query: 40  EIALEESLQLREKGI----------ATEVIVVSIGSCKVEEVLKNSLAMGAD 81
            I L   LQLRE G+          +   IV  IGS K+ E +     MG D
Sbjct: 199 SIDLMSILQLREIGVLLTAVMIAGRSGSAIVAEIGSMKINEEIDAIRTMGLD 250


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 22.3 bits (46), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 148 IIDNHAIVTREVGHGTMTMETPLPA 172
           I+DN  +VT   G+ T T  T LP+
Sbjct: 154 ILDNPLVVTGSAGNDTGTEVTFLPS 178


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.133    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,784
Number of Sequences: 1233
Number of extensions: 5935
Number of successful extensions: 23
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 7
length of query: 249
length of database: 328,796
effective HSP length: 72
effective length of query: 177
effective length of database: 240,020
effective search space: 42483540
effective search space used: 42483540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 37 (18.9 bits)