HHsearch alignment for GI: 254780369 and conserved domain: CHL00099
>CHL00099 ilvB acetohydroxyacid synthase large subunit.
Probab=96.15 E-value=0.015 Score=36.46 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=71.6
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCCE---------ECCCEEEEE
Q ss_conf 0007-45641367777833568899999876398597425788678888889--54015975---------457389999
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGVT---------VSPELYIAA 266 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~~---------v~P~lYia~ 266 (318)
T Consensus 211 L~~AkrPvIi~G~g~~~~~a~-~~l~~lae~lg~Pv~tt~~g--kg~~~e~hpl~~G~~G~~g~~~a~~~l~~aDlvl~l 287 (588)
T CHL00099 211 IKQSSQPLLYVGGGAIISGAH-DEIKELAELFKIPVTTTLMG--KGIFDESHPLCLGMLGMHGTAYANFAVSECDLLIAL 287 (588)
T ss_pred HHHCCCCEEEECCCCCHHHHH-HHHHHHHHHHCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHEEC
T ss_conf 971699789978863321399-99999999759987972356--877766684225877787899998776424111004
Q ss_pred EECCHHHHHHH---HCCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 61672645555---16898899976659988-310276457523899999988609
Q gi|254780369|r 267 GISGAIQHISG---MKDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~qH~~G---~~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
T Consensus 288 G~~l~~~~t~~~~~~~~~~~iI~Id~d~~~ig~~~~~~v~i~gD~~~~L~~L~~~l 343 (588)
T CHL00099 288 GARFDDRVTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKEVLQELLEAL 343 (588)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 88678665687433588852799618999967766788558517999999999862