HHsearch alignment for GI: 254780369 and conserved domain: PRK11916
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional.
Probab=100.00 E-value=0 Score=668.07 Aligned_cols=301 Identities=24% Similarity=0.379 Sum_probs=263.3
Q ss_pred CEEEEEEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 50023489999802975878999999999873893479998189268889987078973999944810100012322455
Q gi|254780369|r 2 TYCDMPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDF 81 (318)
Q Consensus 2 ~~~~M~ilV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~ 81 (318)
T Consensus 3 ~~~~--vwVf~e~~~~-----~~ELlg~Ar~Lg~~v~avv~G~~---~a~~l~~-~Gad~V~~~~~~~~~-~~~~~y~~~ 70 (312)
T PRK11916 3 QLNS--VWVFSDNPER-----YAELFGGAQQWGQQVYAIVQNTD---QAQAVMP-YGPKCIYVLEQNDAL-QRTENYAES 70 (312)
T ss_pred CCCC--EEEEEECCCC-----HHHHHHHHHHHCCEEEEEEECCC---HHHHHHH-CCCCEEEEEECCHHH-CCCHHHHHH
T ss_conf 5477--8999967888-----89999999873882799996680---6999986-199889995164121-030689999
Q ss_pred HHHHCC--CCCEEECCCCCHHHHHHHHHHHHCCCCEECCCEEEC---CCCEEEEEEECCCEEEEEEECCCCEEEEECCCC
Q ss_conf 787403--456044157810344678888751774101320224---687279741069526899977984279951686
Q gi|254780369|r 82 VVSIAR--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEII---SPKIFKRPSYTGNIIQTIETTDTYQIITIRAIA 156 (318)
Q Consensus 82 l~~~~~--~~~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv~i~---~~~~~~rp~fgG~~~a~v~~~~~~~viTvr~~s 156 (318)
T Consensus 71 l~~li~~~~P~~vL~~aT~~GRdlA~rlAarL~~gl~aD~~~l~~~~~~l~~~r~~~gG~~~~~~~~~~~~~~~tvrpg~ 150 (312)
T PRK11916 71 IAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGV 150 (312)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCC
T ss_conf 99999864999999867811667899999984998254249987169957998411477158998708995799989866
Q ss_pred CCCCC-CCCCCCCEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 43333-55666661562111024453025885444314566670007456413677778335688999998763985974
Q gi|254780369|r 157 FPPAP-KAEKVASIHKISAEVLEKYISNTRFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGA 235 (318)
Q Consensus 157 f~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~v~L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~ 235 (318)
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~vdL~~A~vVVsgGRGlg~~e~f-~l~~eLA~~LGa~vGa 226 (312)
T PRK11916 151 QEPCTSDTSHQCPTETVPYVAPR---HEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDL-KMVHELAAVLNAEVGC 226 (312)
T ss_pred CCCCCCCCCCCCCEEECCCCCCC---CEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCHHH-HHHHHHHHHHCCCEEE
T ss_conf 66676788886405872455787---4189999960457899876685899888766770308-9999999985993461
Q ss_pred EHHHHH-CCCCCHHHHHHCCCCEECCCEEEEEEECCHHHHHHHHCCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHH
Q ss_conf 257886-7888888954015975457389999616726455551689889997665998831027645752389999998
Q gi|254780369|r 236 TRDAVD-AGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEI 314 (318)
Q Consensus 236 SRp~vD-~gw~p~~~qIG~tG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l 314 (318)
T Consensus 227 SRpvvd~~GW~p~~~QVGqTGk~V~P~lYiA~GISGAiQH~~Gm~~s~~IVAIN~D~~APIF~~ADygiVgD~~evvP~L 306 (312)
T PRK11916 227 SRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPAL 306 (312)
T ss_pred ECCEEECCCCCCHHHEECCCCEEECCEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHH
T ss_conf 01212247779855742358839786289998146278888654469889998189899850107877867299999999
Q ss_pred HHCC
Q ss_conf 8609
Q gi|254780369|r 315 EKNL 318 (318)
Q Consensus 315 ~~~l 318 (318)
T Consensus 307 ie~l 310 (312)
T PRK11916 307 ISQL 310 (312)
T ss_pred HHHH
T ss_conf 9986